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Bruker database



Organism Clinical feature Classification Likely found in BSL Present in Biotyper library Biotyper MSPs New MSPs Comments
Campylobacter avium Gram-, spiral, microaerophilic, motile and oxidase positive 2 Yes CCUG 56292T NVU
Campylobacter canadensis Gram-, spiral, microaerophilic, motile and oxidase positive 1 Yes CCUG 54429T NVU
Campylobacter coli campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cattle, swine and birds, food, feces 2 Yes 10090_03 NVU, 11167_03 NVU, CCUG 11283T NVU
Campylobacter coli ssp coli campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cattle, swine and birds, food, feces 2 Yes DSM 4689T FLI
Campylobacter concisus Gram-, spiral, microaerophilic, motile and oxidase positive mouth 2 Yes 2009_44055 CMA, 2010_112101_Fecal CMA, 2010_112101_Oral CMA, 2010_113332_Fecal CMA, 2010_113332_Oral CMA, 2010_115605_Fecal CMA, 2010_115605_Oral CMA, 2010_120841 CMA, DSM 9716T DSM, K4 CMA, LMG 7964 LMG, M2 CMA, P3flue_re1AN USH, P7flue_li1AN USH
Campylobacter cuniculorum Gram-, spiral, microaerophilic, motile and oxidase positive rabbits 2 No
Campylobacter curvus abscess in mouth Gram-, spiral, microaerophilic, motile and oxidase positive mouth 1 Yes DSM 6644T DSM, LMG 11033 LMG, LMG 11034 LMG, LMG 11247 LMG, LMG 13932 LMG
Campylobacter fetus ssp fetus Abortion in cattle nad sheep, opportunistic pathogen i humans, bacteremia and thrombophlebitis Gram-, spiral, microaerophilic, motile and oxidase positive Blood, respiratory tract 2 Yes CCUG 6823T NVU, DSM 5361T DSM, DSM 5361T FLI, RV412_A1_2010_02 LBK
Campylobacter fetus ssp venerealis Abortion in cattle nad sheep, opportunistic pathogen i humans, bacteremia and thrombophlebitis Gram-, spiral, microaerophilic, motile and oxidase positive Blood, respiratory tract 2 Yes CCUG 24260 NVU, CCUG 538T NVU, DSM 18826T DSM, NCTC 10354 FLI
Campylobacter gracilis Gram-, spiral, microaerophilic, motile and oxidase positive mouth 2 Yes CCUG 27720T NVU, DSM 19528T DSM
Campylobacter helveticus Gram-, spiral, microaerophilic, motile and oxidase positive cats 2 Yes 370_01 NVU, 8174_01 NVU, Blut 7986_08 NVU, CCUG 30682T NVU
Campylobacter hominis Gram-, spiral, microaerophilic, motile and oxidase positive feces 2 Yes CCUG 45161T NVU
Campylobacter hyointestinalis enteritis in swine Gram-, spiral, microaerophilic, motile and oxidase positive swine intestine 1 Yes CCUG 14169T NVU, F223 CPB, ZC27 NVU
Campylobacter hyointestinalis ssp hyointestinalis Gram-, spiral, microaerophilic, motile and oxidase positive swine intestine 1 No
Campylobacter hyointestinalis ssp lawsonii Gram-, spiral, microaerophilic, motile and oxidase positive swine intestine 1 No
Campylobacter insulaenigrae septecimia, enteritis in immunocompromized patients Gram-, spiral, microaerophilic, motile and oxidase positive marine mammals 2 No
Campylobacter jejuni campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cattle, swine and birds, food, feces 2 Yes ATCC 29428 THL, MB_4738_05 THL, Bkt 4391_08 NVU, MB_6111_05 THL, MB_7240_05 THL
Campylobacter jejuni ssp doylei campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cattle, swine and birds, food, feces 2 Yes A698 CPB, BRUG 374 CPB, C410 CPB, CCUG 24567T NVU, NCTC 11951_1 FLI
Campylobacter jejuni ssp jejuni campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cattle, swine and birds, food, feces 2 Yes DSM 4688T DSM
Campylobacter lanienae Gram-, spiral, microaerophilic, motile and oxidase positive cattle feces 2 Yes CCUG 44467T NVU
Campylobacter lari diarrhea Gram-, spiral, microaerophilic, motile and oxidase positive feces 1 Yes 227_99 NVU, 165_98 NVU, Cb 193_87 NVU
Campylobacter lari ssp concheus diarrhea Gram-, spiral, microaerophilic, motile and oxidase positive feces 1 No
Campylobacter lari ssp lari diarrhea Gram-, spiral, microaerophilic, motile and oxidase positive feces 1 Yes CCUG 23947T NVU, DSM 11375T DSM
Campylobacter mucosalis Gram-, spiral, microaerophilic, motile and oxidase positive swine intestine 2 No
Campylobacter peloridis Gram-, spiral, microaerophilic, motile and oxidase positive humans and molluscs 2 Yes BRUG 251 CPB
Campylobacter rectus Gram-, spiral, microaerophilic, motile and oxidase positive mouth 1 Yes DSM 3260T DSM
Campylobacter showae Gram-, spiral, microaerophilic, motile and oxidase positive mouth 2 Yes CCUG 30254T NVU, AN_P2_bue_re3 USH, P3bue_re11AN USH, VA4369_11 ERL
Campylobacter sputorum Gram-, spiral, microaerophilic, motile and oxidase positive animal feces, sperm, mouth 2 Yes DSM 5364 FLI, NCTC 11415 FLI, GD78 GDD
Campylobacter sputorum ssp bubulus Gram-, spiral, microaerophilic, motile and oxidase positive sheep feces, mouth 2 Yes DSM 5363 FLI
Campylobacter sputorum ssp sputorum Gram-, spiral, microaerophilic, motile and oxidase positive bull sperm, mouth 2 No
Campylobacter subantarcticus Gram-, spiral, microaerophilic, motile and oxidase positive 1 No
Campylobacter upsaliensis campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cats and dogs 2 Yes 412_01 NVU, 451_01 NVU, Bkt 7522_08 NVU, CCUG 14913T NVU, DSM 5365T FLI
Campylobacter ureolyticus Gram-, spiral, microaerophilic, motile and oxidase positive 2 Yes 0807M22055902 bacil - IBS, 110324_29 PNU, 110324_95 PNU, 110324_96 PNU, VA20417_11 ERL
Campylobacter volucris Gram-, spiral, microaerophilic, motile and oxidase positive 2 No
Candida aaseri Yeast-like fungus 2 No
Candida alai Yeast Yes CBS 9899T CBS
Candida albicans Yeast-like fungus 2 Yes ATCC 10231 THL, ATCC 10231 VML, ATCC 90028 VML, DSM 11943 DSM, DSM 11945 DSM, DSM 11949 DSM, DSM 1577 DSM, DSM 1665 DSM, DSM 3454 DSM, DSM 5817 DSM, DSM 6569 DSM, DSM 6659 DSM, RV_D VML, VA_17248_07 04 UKE
Candida albicans_africana vaginal candidiasis Yeast-like fungus Vagina 2 Yes VML
Candida allociferrii Infections in immunocompromized patients Yeast-like fungus 2 Yes VML
Candida amapae Yeast-like fungus 2 No
Candida ambrosiae Yeast Yes CBS 8845 CBS
Candida anatomiae Yeast-like fungus 2 No
Candida ancudensis Yeast-like fungus 2 No
Candida antillancae Yeast-like fungus 2 No
Candida apicola Yeast-like fungus 2 No
Candida apis Yeast-like fungus 2 No
Candida atlantica Yeast-like fungus 2 No
Candida atmosphaerica Yeast-like fungus 2 No
Candida auringiensis Yeast-like fungus 2 No
Candida auris Yeast Yes CBS KCTC 17809 CBS, CBS KCTC 17810 CBS, DSM 21092T CBS
Candida austromarina Yeast-like fungus 2 No
Candida azyma Yeast-like fungus 2 No
Candida beechii Yeast-like fungus 2 No
Candida bertae Yeast-like fungus 2 No
Candida berthetii Yeast-like fungus 2 No
Candida blankii Yeast-like fungus 2 No
Candida blattae Yeast Yes CBS 9871T CBS
Candida bohiensis Yeast Yes CBS 9897T CBS
Candida boidinii Yeast-like fungus 2 Yes DSM 70024 DSM, DSM 70026T DSM, DSM 70033 DSM, DSM 70034 DSM, VML
Candida boleticola Yeast-like fungus 2 No
Candida bombi Yeast-like fungus 2 No
Candida bombicola Yeast-like fungus 2 No
Candida bracarensis Yeast Yes CBS 10154T CBS, RV1 MY 1 10 ERL
Candida buenavistaensis Yeast Yes CBS 9895T CBS
Candida buinensis Yeast-like fungus 2 No
Candida buturi Yeast-like fungus 2 No
Candida cantarellii Yeast-like fungus 2 No
Candida carpophila Yeast Yes CBS 5256 CBS, CBS 7921 CBS
Candida caseinolytica Yeast-like fungus 2 No
Candida castellii Yeast-like fungus 2 Yes CBS 4332T CBS
Candida castrensis Yeast-like fungus 2 No
Candida catenulata Yeast-like fungus 2 Yes 138 VML, 86 VML, DSM 70040 DSM, DSM 70136 DSM
Candida chilensis Yeast-like fungus 2 No
Candida chiropterum Yeast-like fungus 2 No
Candida chodatii (ana) Hyphopichia burtonii (teleo) Yeast-like fungus 2 Yes MY00872_06 ERL
Candida coipomoensis Yeast-like fungus 2 No
Candida conglobata Yeast-like fungus 2 No
Candida cylindracea Yeast-like fungus 2 Yes DSM 2031T DSM
Candida dubliniensis Yeast-like fungus 2 Yes 20 UKE, 99 PSB, RV_2_2006 VML
Candida duobushaemulonii 1 Yes CBS 6915 CBS, CBS 7798T CBS, CBS 7799 CBS, CBS 7800 CBS, CBS 9754 CBS, CBS CL 7829P CBS, MY916 09 ERL
Candida ernobii Yeast-like fungus 2 Yes DSM 70858T DSM
Candida freyschussii Yeast-like fungus 2 Yes DSM 70047 DSM
Candida friedrichii Yeast-like fungus 2 Yes DSM 70050T DSM
Candida frijolesensis Yeast Yes CBS 10377T CBS
Candida glabrata Yeast-like fungus 2 Yes 10035463_101 USH, 31 PSB, ATCC 2001T THL, ATCC 90030 VML, DSM 11950 DSM, DSM 6425 DSM, DSM 70615 DSM
Candida haemulonii Yeast-like fungus 2 Yes DSM 70624T DSM, VML
Candida inconspicua Yeast-like fungus 2 Yes DSM 70631 DSM
Candida infanticola Yeast Yes CBS 7922T CBS
Candida intermedia Yeast-like fungus 2 Yes DSM 70753 DSM, MY565_09 ERL
Candida labiduridarum Yeast Yes CBS 10452T CBS
Candida lactiscondensi Yeast-like fungus 2 Yes DSM 70635T DSM
Candida magnoliae Yeast-like fungus 2 Yes DSM 70638T DSM, DSM 70639 DSM
Candida maltosa Yeast-like fungus 2 Yes DSM 15531 DSM
Candida membranifaciens Yeast-like fungus 2 Yes DSM 70109 DSM, MY913_09 ERL
Candida mesenterica Yeast-like fungus 2 Yes DSM 70759 DSM, DSM 70015 DSM
Candida metapsilosis Yeast-like fungus 2 Yes P3120_8_37 HAC, P3121_8_37 HAC
Candida multigemmis Yeast-like fungus 2 Yes DSM 70862T DSM
Candida nemodendra Yeast-like fungus 2 Yes DSM 70647T DSM
Candida nitratophila Yeast-like fungus 2 Yes DSM 70649T DSM
Candida nivariensis Yeast-like fungus 2 Yes 10_MYK 1021 MHH
Candida nivariensis Yeast-like fungus 2 Yes RV490_Feb09_04 PSB
Candida norvegica Yeast-like fungus 2 Yes DSM 70863 DSM
Candida orthopsilosis Yeast-like fungus 2 Yes P3118_8_37 HAC, P3119_8_37 HAC, VML
Candida palmioleophila Yeast-like fungus 2 Yes 69 PIM, MY00850_07 ERL, MY938_07 ERL
Candida parapsilosis Yeast-like fungus 2 Yes 26 PSB, ATCC 22019 THL, DSM 11224 DSM, DSM 4237 DSM, DSM 5784T DSM, DSM 70125 DSM, DSM 70126 DSM, VML, MY924_09 ERL
Candida pararugosa Yeast-like fungus 2 Yes 33 PIM, MY_00389_09 ERL, VML
Candida peltata Yeast-like fungus 2 Yes DSM 70579T DSM
Candida pini Yeast-like fungus 2 Yes DSM 70653T DSM
Candida pseudohaemulonii Yeast Yes CBS 10004 CBS, CBS KCTC 17807 CBS, JCM 12453T CBS
Candida rugosa Yeast-like fungus 2 Yes 89 PSB
Candida saitoana Yeast Yes CBS 940T CBS
Candida sake Yeast-like fungus 2 Yes DSM 70763 DSM
Candida shehatae var insectosa Yeast Yes CBS 4286 CBS
Candida sojae Yeast Yes MY333MA 11 ERL, MY333STR 11 ERL
Candida solani Yeast-like fungus 2 Yes DSM 3315 DSM
Candida spandovensis Yeast-like fungus 2 Yes DSM 70866T DSM
Candida succiphila Yeast-like fungus 2 Yes DSM 2149T DSM
Candida tropicalis Yeast-like fungus 2 Yes ATCC 13803 THL, DSM 1346 DSM, DSM 4238 DSM, DSM 5991 DSM, DSM 70151 DSM, DSM 7524 DSM, DSM 9419 DSM, RV_03 VML, VML
Candida versatilis Yeast-like fungus 2 Yes DSM 6956T DSM
Candida vini Yeast-like fungus 2 Yes DSM 70184 DSM
Candida viswanathii Yeast Yes CBS 1924 CBS, CBS 4024T CBS, RV5 MY 1 11 ERL
Candida zeylanoides Yeast-like fungus 2 Yes DSM 70185 DSM, VML
Candidatus Reyranella massiliensis Yeast-like fungus freshwater 2 Yes 125_21 RLT, 181_20 RLT, 3B26_22 RLT
Candida_cacaoi[ana]# (Pichia_farinosa[teleo]) Yeast-like fungus 2 Yes DSM 2226T DSM, VML
Candida_ciferrii[ana] (Stephanoascus_ciferrii[teleo]#) Yeast-like fungus 2 Yes DSM 70749 DSM, RV07_02 17 VML
Candida_citrea[ana] (Pichia_nakasei[teleo]#) Yeast Yes CBS 5141T CBS
Candida_colliculosa[ana] (Torulaspora_delbrueckii[teleo]#) Yeast-like fungus 2 Yes 901400020 LBK, 901400023 LBK, VML
Candida_fabianii[ana] (Pichia_fabianii[teleo]) Yeast Yes CBS 5481T CBS, CBS 5482 CBS, CBS 5640 CBS, CBS 5650 CBS, CBS 6212 CBSMY00875_10 ERL, MY1019_10 ERL, RV5_MY_1_10 ERL
Candida_guilliermondii[ana] (Pichia_guilliermondii[teleo]#) Yeast-like fungus 2 Yes CBS 566 CBS, DSM 11947 DSM, RV490_Feb09_02 PSB, VML, MY970_1_09 ERL
Candida_guilliermondii_var_membranaefaciens[ana] (Pichia_ohmeri[teleo]#) Yeast-like fungus 2 Yes DSM 70813 DSM, DSM 70815 DSM
Candida_holmii[ana] (Kazachstania_exigua[teleo]) Yeast Yes CBS 135NT CBS
Candida_kefyr[ana] (Kluyveromyces_marxianus[teleo]#) Yeast-like fungus 2 Yes DSM 70073 DSM, DSM 70106 DSM
Candida_kefyr[ana] (Kluyveromyces_marxianus_ssp_marxianus[teleo]#) Yeast-like fungus 2 Yes CBS 834 CBS
Candida_kefyr[ana]# (Kluyveromyces_marxianus[teleo]) Yeast-like fungus 2 Yes 41 PSB, VML
Candida_krusei[ana] (Issatchenkia_orientalis[teleo]#) Yeast-like fungus 2 Yes DSM 11956 DSM, DSM 6128 DSM, DSM 70075 DSM, DSM 70079 DSM, 36 PSB
Candida_krusei[ana]# (Issatchenkia_orientalis[teleo]) Yeast-like fungus 2 Yes ATCC 14243 THL, ATCC 6258 THL, ATCC 6258 VML, RV491_Sep09_D LBK
Candida_lambica[ana] (Pichia_fermentans[teleo]#) Yeast-like fungus 2 Yes DSM 70090 DSM, DSM 70095 DSM
Candida_lambica[ana] (Pichia_fermentans_ssp_fermentans[teleo]#) Yeast-like fungus 2 Yes CBS 603 CBS
Candida_lambica[ana]# (Pichia_fermentans[teleo]) Yeast-like fungus 2 Yes RV490_Oct09_02 LBK, MY568_09 ERL
Candida_lipolytica[ana] (Yarrowia_lipolytica[teleo]#) Yeast-like fungus 2 Yes DSM 1345 DSM, DSM 3286 DSM, DSM 70561 DSM, DSM 70562 DSM, DSM 8218 DSM, VML
Candida_lusitaniae[ana] (Clavispora_lusitaniae[teleo]#) Yeast-like fungus 2 Yes 45 PSB, 51 PIM, CBS 4413T CBS, VML, DSM 70102 DSM
Candida_norvegensis[ana] (Pichia_norvegensis[teleo]#) Yeast-like fungus 2 Yes 87 PSB, 98 PSB, 993800278 LBK, DSM 70760 DSM, RV_3_2006 VML, MY140_10 ERL
Candida_pelliculosa[ana] (Pichia_anomala[teleo]#) Yeast-like fungus 2 Yes DSM 70130 DSM, DSM 70260 DSM, MY_00164_09 ERL
Candida_pintolopseii[ana] (Kazachstania_pintolopesii[teleo]) Yeast Yes CBS 2985T CBS, CBS 3045 CBS
Candida_pulcherrima[ana] (Metschnikowia_pulcherrima[teleo]#) Yeast-like fungus 2 Yes CBS 2244 PAH, DSM 70336 DSM, VML
Candida_reukaufii[ana] (Metschnikowia_reukaufii[teleo]#) Yeast-like fungus 2 Yes DSM 70880 VML
Candida_slooffiae[ana]# (Kazachstania_slooffiae[teleo]) Yeast-like fungus 2 Yes 01 VML
Candida_sorbosa[ana] (Issatchenkia_occidentalis[teleo]#) Yeast-like fungus 2 Yes CBS 1910 CBS
Candida_sphaerica[ana] (Kluyveromyces_lactis[teleo]#) Yeast-like fungus 2 Yes 900400310 LBK, 70 PIM, MY166_10 ERL
Candida_thermophila[ana]# (Ogataea_thermophila[teleo]) Yeast-like fungus 2 Yes VML
Candida_utilis[ana]# (Pichia_jandinii[teleo]) Yeast-like fungus 2 Yes DSM 2361 DSM, DSM 70163 DSM, DSM 70167 DSM
Candida_valida[ana] (Pichia_membranifaciens[teleo]#) Yeast-like fungus 2 Yes 10 LBK
Candida_valida[ana] (Pichia_membranifaciens[teleo]#) Yeast-like fungus 2 Yes 901400022 LBK, DSM 70169 DSM, DSM 70179 DSM
Capnocytophaga canimorsus Infections from dog bites, septicemia Gram-, filamentous rods, facultative aerobe blood, oral cavity of dogs 2 Yes DSM 19204T DSM
Capnocytophaga cynodegmi Infections from dog bites, septicemia Gram-, filamentous rods, facultative aerobe oral cavity of dogs 2 Yes DSM 19736T DSM
Capnocytophaga gingivalis Gram-, filamentous rods, facultative aerobe oral cavity 2 Yes DSM 3290T DSM, 110706_D9 LUMC, 1V12049207_3e MVD, P4bue_re6AN USH, P4flue_re3AN USH, P8flue_re3AN USH
Capnocytophaga granulosa dental plaque Gram-, filamentous rods, facultative aerobe oral cavity 2 Yes DSM 11449T DSM, P3bue_li10AN USH
Capnocytophaga haemolytica dental plaque Gram-, filamentous rods, facultative aerobe oral cavity 2 Yes DSM 11385T DSM
Capnocytophaga leadbetteri Gram-, filamentous rods, facultative aerobe 2 No
Capnocytophaga ochracea Gram-, filamentous rods, facultative aerobe oral cavity 2 Yes DSM 7271T DSM, DSM 7272 DSM
Capnocytophaga sp Gram-, filamentous rods, facultative aerobe 2 Yes G18141 IBS, 110706_F4 LUMC
Capnocytophaga sputigena Gram-, filamentous rods, facultative aerobe oral cavity 2 Yes DSM 7273T DSM, RV412_A2_09_05 LBK, 110706_E4 LUMC, 110706_E5 LUMC, 110706_F6 LUMC
Cardiobacterium hominis endocarditis gram-, rod highly pleomorphic and irregularly staining blood, respiratory tract 2 Yes DSM 8339T DSM
Cardiobacterium sp. endocarditis gram-, rod highly pleomorphic and irregularly staining blood, respiratory tract 2 Yes H42036_3 CHOA
Cardiobacterium valvarum endocarditis gram-, rod highly pleomorphic and irregularly staining blood, respiratory tract 2 Yes DSM 17211T DSM
Carnobacterium alterfunditum Gram+, anaerobe rods meat 1 No
Carnobacterium divergens Gram+, anaerobe rods meat 1 No
Carnobacterium funditum Gram+, anaerobe rods meat 1 No
Carnobacterium gallinarum Gram+, anaerobe rods meat 1 No
Carnobacterium inhibens Gram+, anaerobe rods meat 1 No
Carnobacterium joetgali Gram+, anaerobe rods meat 1 No
Carnobacterium maltaromaticum fish pathogen Gram+, anaerobe rods milk 1 Yes DSM 20342T DSM, CIP 102035 CIP, M23 101342 CIP
Carnobacterium mobile Gram+, anaerobe rods meat 1 No
Carnobacterium pleistocenium Gram+, anaerobe rods meat 1 No
Carnobacterium viridans Gram+, anaerobe rods meat 1 No
Castellaniella caeni Gram-, facultatively anaerobic, rods No
Castellaniella daejeonensis Gram-, facultatively anaerobic, rods No
Castellaniella defragrans Gram-, facultatively anaerobic, rods Yes DSM 12141T DSM, DSM 12141T HAM, DSM 12142 DSM, DSM 12143 DSM, DSM 12144 DSM
Castellaniella denitrificans Gram-, facultatively anaerobic, rods No
Castellaniella ginsengisoli Gram-, facultatively anaerobic, rods No
Caulobacter fusiformis Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter ginsengisoli Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter henricii Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter leidyi Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter mirabilis Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter segnis Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter sp Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 Yes %5B2%5D 101220_44166 BRB
Caulobacter vibrioides Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 Yes LB_101494_09 ERL
Cedecea davisae Opportunistic infections Gram-, rods, motile, non spore forming sputum, blood, skin wounds, gall bladder, urine and lung tissue 2 Yes DSM 4568T HAM
Cedecea lapagei Opportunistic infections Gram-, rods, motile, non spore forming sputum, blood, skin wounds, gall bladder, urine and lung tissue 2 Yes DSM 4587T HAM
Cedecea neteri Opportunistic infections Gram-, rods, motile, non spore forming sputum, blood, skin wounds, gall bladder, urine and lung tissue 2 Yes DSM 13693T HAM
Cellulomonas aerilata Gram+, rods soil 1 No
Cellulomonas biazotea Gram+, rods soil 1 No
Cellulomonas bogoriensis Gram+, rods No
Cellulomonas chitinilytica Gram+, rods No
Cellulomonas composti Gram+, rods soil 1 No
Cellulomonas denverensis Gram+, rods blood 2 No
Cellulomonas fimi Gram+, rods soil 1 Yes DSM 20114 DSM
Cellulomonas flavigena Gram+, rods 1 Yes B194 UFL
Cellulomonas gelida Gram+, rods soil 1 Yes IMET 11078 HKJ
Cellulomonas hominis Gram+, rods cerebrospinal fluid 2 No
Cellulomonas humilata Gram+, rods soil 2 No
Cellulomonas iranensis Gram+, rods soil 1 No
Cellulomonas persica Gram+, rods soil 1 No
Cellulomonas phragmiteti Gram+, rods No
Cellulomonas terrae Gram+, rods soil 1 No
Cellulomonas uda Gram+, rods soil 1 Yes HKI 11495 HKJ
Cellulomonas xylanilytica Gram+, rods soil 1 No
Cellulosimicrobium cellulans Yes B480 UFL, DSM 20155 DSM
Cellulosimicrobium funkei No
Cellulosimicrobium terreum No
Chaetomium atrobrunneum Infections in immunocompromized patients Fungus soil, plant debris, air 1 No
Chaetomium funicola Fungus soil, plant debris, air 1 No
Chaetomium globosum Brain abscess, peritonitis, onychomycosis Fungus soil, plant debris, air 1 Yes RVD_08I VML
Chaetomium murorum Fungus soil, plant debris, air 1 No
Chlamydia muridarum Obligate intracellular, Gram- mice, hamsters 2 No
Chlamydia suis Conjunctivitis, enteritis and pneumonia in swine Obligate intracellular, Gram- swine 2 No
Chlamydophila aboruts Abortion and fetal death Obligate intracellular, Gram- Fetuses 2 No
Chlamydophila caviae Conjunctiva of guinea pigs Obligate intracellular, Gram- eye discharge 2 No
Chlamydophila felis Feline pneumonia Obligate intracellular, Gram- Lung of feline, human lungs 2 No
Chlamydophila pecorum Abortion, conjunctivitis, pneumonia Obligate intracellular, Gram- cattle, sheep, koalas and swine 2 No
Chlamydophila pneumoniae Pneumonia Obligate intracellular, Gram- Lungs 2 No null null null
Chromobacterium aquaticum Gram- rods No
Chromobacterium haemolyticum Gram- rods No
Chromobacterium piscinae Gram- rods No
Chromobacterium pseudoviolaceum Gram- rods No
Chromobacterium subtsugae Gram- rods Yes DSM 17043T DSM
Chromobacterium violaceum Gram- rods Yes C49 MVO, DSM 30191T DSM
Chromohalobacter beijerimckii Gram-, rod-like motile No
Chromohalobacter canadensis Gram-, rod-like motile No
Chromohalobacter israelensis Gram-, rod-like motile No
Chromohalobacter japonicus Gram-, rod-like motile No
Chromohalobacter marismortui Gram-, rod-like motile No
Chromohalobacter nigrandesensis Gram-, rod-like motile No
Chromohalobacter salexigens Gram-, rod-like motile Yes B570 UFL
Chromohalobacter sarecensis Gram-, rod-like motile No
Chryptotrichosporon anacardii Yeast Yes CBS 9551T CBS, CBS 9550 CBS
Chryseobacterium antarcticum Gram- bacilli. No
Chryseobacterium anthropi Gram- bacilli. No
Chryseobacterium aquaticum Gram- bacilli. No
Chryseobacterium aquifrigidense Gram- bacilli. No
Chryseobacterium arthrosphaerae Gram- bacilli. No
Chryseobacterium balustinum Gram- bacilli. No
Chryseobacterium bovis Gram- bacilli. No
Chryseobacterium caeni Gram- bacilli. No
Chryseobacterium chaponense Gram- bacilli. No
Chryseobacterium culicis Gram- bacilli. No
Chryseobacterium daecheongense Gram- bacilli. No
Chryseobacterium daeguense Gram- bacilli. No
Chryseobacterium defluvii Gram- bacilli. No
Chryseobacterium elymi Gram- bacilli. No
Chryseobacterium flavum Gram- bacilli. No
Chryseobacterium formosense Gram- bacilli. No
Chryseobacterium gambrini Gram- bacilli. No
Chryseobacterium ginsenosidimutans Gram- bacilli. Yes CIP 110378 CIP
Chryseobacterium gleum Gram- bacilli. No H42703 CHOA, T25198_2 CHOA
Chryseobacterium greenlandense Gram- bacilli. No
Chryseobacterium gregarium Gram- bacilli. No
Chryseobacterium hagamense Gram- bacilli. Yes CIP 110400 CIP
Chryseobacterium haifense Gram- bacilli. No
Chryseobacterium hispanicum Gram- bacilli. No
Chryseobacterium homins Gram- bacilli. Yes 456 RLT
Chryseobacterium humi Gram- bacilli. No
Chryseobacterium hungaricum Gram- bacilli. No
Chryseobacterium indologenes Gram- bacilli. Yes 098_NEB37 NFI, CCM 4451T CCM
Chryseobacterium indoltheticum Gram- bacilli. No
Chryseobacterium jejuense Gram- bacilli. No
Chryseobacterium jeonii Gram- bacilli. No
Chryseobacterium joostei Gram- bacilli. Yes LMG 18212T HAM
Chryseobacterium koreense Gram- bacilli. No
Chryseobacterium lathyri Gram- bacilli. No
Chryseobacterium luteum Gram- bacilli. No
Chryseobacterium marinum Gram- bacilli. No
Chryseobacterium molle Gram- bacilli. No
Chryseobacterium oncorhynchi Gram- bacilli. No
Chryseobacterium oranimense Gram- bacilli. Yes 901900074 LBK
Chryseobacterium pallidum Gram- bacilli. No
Chryseobacterium palustre Gram- bacilli. No
Chryseobacterium piperi Gram- bacilli. No
Chryseobacterium piscicola Gram- bacilli. No
Chryseobacterium piscium Gram- bacilli. No
Chryseobacterium rhizosphaerae Gram- bacilli. No
Chryseobacterium scophthalmum Gram- bacilli. Yes LMG 13028T HAM
Chryseobacterium shigense Gram- bacilli. No
Chryseobacterium soldanellicola Gram- bacilli. No
Chryseobacterium soli Gram- bacilli. No
Chryseobacterium solincola Gram- bacilli. No
Chryseobacterium sp Gram- bacilli. Yes 107 PIM
Chryseobacterium taeanense Gram- bacilli. No
Chryseobacterium taichungense Gram- bacilli. No
Chryseobacterium taiwanense Gram- bacilli. No
Chryseobacterium treverense Gram- bacilli. No
Chryseobacterium ureilyticum Gram- bacilli. No
Chryseobacterium vietnamense Gram- bacilli. No
Chryseobacterium vrystaatense Gram- bacilli. No
Chryseobacterium wanjuense Gram- bacilli. No
Chryseobacterium xinjiangense Gram- bacilli. No
Chryseobacterium yonginense Gram- bacilli. No
Citrobacter amalonaticus Yes DSM 4593T HAM, CCM 4706 CCM
Citrobacter braakii Yes 20663_2 CHB, 9314_2 CHB
Citrobacter farmeri Yes DSM 17655T HAM
Citrobacter freundii Yes DSM 30039T HAM, DSM 15979 DSM, 22054_1 CHB, 13158_2 CHB
Citrobacter gillenii Yes DSM 13694T HAM
Citrobacter koseri Yes Mu15167_1 CHB, MB_8260_05 THL, DSM 4596 DSM, DSM 4595T HAM, DSM 4570 DSM, 9553_1 CHB
Citrobacter murliniae Yes DSM 13695T HAM
Citrobacter rodentium Yes DSM 16636T HAM
Citrobacter sedlakii Yes IBS_MS_10 IBS, DSM 17674T HAM
Citrobacter werkamnii No
Citrobacter youngae gram-negative Enterobacteriaceae water, soil, food, and the intestinal tracts of animals and humans. Yes DSM 17578T HAM
Clavibacter michiganensis No
Clavibacter michiganensis ssp insidiosus No
Clavibacter michiganensis ssp michiganensis No
Clavibacter michiganensis ssp nebraskensis No
Clavibacter michiganensis ssp sepedonicus No
Clavibacter michiganensis ssp tessellarius Yes DSM 20741T DSM
Clostridium aceticum Gram+, strictly anaerobic, endospore producing, rods Mud 1 No
Clostridium acetireducens Gram+, strictly anaerobic, endospore producing, rods No
Clostridium acetobutylicum Gram+, strictly anaerobic, endospore producing, rods Plants 1 Yes DSM 792T VML, DSM 1731 DSM, DSM 1737 DSM, DSM 1738 DSM
Clostridium acidisoli Gram+, strictly anaerobic, endospore producing, rods soil 1 No
Clostridium aciditolerans Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 17425T DSM
Clostridium acidurici Gram+, strictly anaerobic, endospore producing, rods soil 1 No
Clostridium aerotolerans Gram+, strictly anaerobic, endospore producing, rods sheep 1 Yes DSM 5434T DSM
Clostridium aestuarii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium akagii Gram+, strictly anaerobic, endospore producing, rods soil 1 No
Clostridium alcalibutyricum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium alcaliphilum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium aldrichii Gram+, strictly anaerobic, endospore producing, rods Yes DSM 19262T DSM
Clostridium algidicarnis Gram+, strictly anaerobic, endospore producing, rods Yes DSM 15099T DSM
Clostridium algidixylanolyticum Gram+, strictly anaerobic, endospore producing, rods spoiled lamb meat 1 Yes DSM 12273T DSM
Clostridium algoriphilum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium alkalicellulosi Gram+, strictly anaerobic, endospore producing, rods No
Clostridium aminobutyricum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium aminophilum Gram+, strictly anaerobic, endospore producing, rods cattle 1 Yes DSM 10710T DSM
Clostridium aminovalericum Gram+, strictly anaerobic, endospore producing, rods Soil, sludge 1 No
Clostridium amygdalinum Gram+, strictly anaerobic, endospore producing, rods sludge 1 No
Clostridium amylolyticum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium arbusti Gram+, strictly anaerobic, endospore producing, rods No
Clostridium arcticum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium argentinense Gram+, strictly anaerobic, endospore producing, rods No
Clostridium asparagiforme Gram+, strictly anaerobic, endospore producing, rods No
Clostridium aurantibutyricum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium autoethanogenum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium baratii Botulism Gram+, strictly anaerobic, endospore producing, rods Yes 1018_NCTC 10986 BOG, 1084_ATCC 25782 BOG
Clostridium bartlettii Gram+, strictly anaerobic, endospore producing, rods Yes DSM 16795T DSM
Clostridium beijerinckii Gram+, strictly anaerobic, endospore producing, rods 1 Yes 1011_DSM 552 BOG, 1072_ATCC 25752T BOG
Clostridium bifermentans Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 630 DSM, 2274_CCUG 35556 A BOG, 2273_CCUG 35297 BOG, 1027_NCTC 1341 BOG, AB_2 LGL
Clostridium bogorii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium boliviensis Gram+, strictly anaerobic, endospore producing, rods No
Clostridium bolteae Gram+, strictly anaerobic, endospore producing, rods feces 2 Yes DSM 15670T DSM
Clostridium botulinum Botulism Gram+, strictly anaerobic, endospore producing, rods 2 Yes G 2270_Spanien 4615_BOG, G 1073_ATCC 27322_BOG, A 2295_ NewZealand 35ka29_BOG, A 2292_NewZealand 4997_BOG, A 2276_Schweden 7735_BOG, A 2267_Spanien 551_BOG, A 1028_NCTC 7272_BOG, B 2293_NewZealand 75-3074_BOG, B 2269 Spanien 4610_BOG, B 1740_CMM 27_2_BOG, B 1029_NCTC 7273_BOG, C2_2256_Holland A028_BOG, C1_2257_Holland 468C_BOG, C 2294_NewZealand 5295_BOG, C 2145_Erfurt REB 1455_BOG, C 1030_NCTC 8264_BOG, D 2142_Pasteur 1873-D_BOG, D 1739_ATCC 9633_BOG, D 1031_NCTC 8265_BOG, E 2271_Spanien 4611_BOG, E 1032_NCTC 8266_BOG, F 2297_NewZealand 83-4304_BOG, F 2272_Spanien 4612_BOG, F 1033_NCTC 10281_BOG
Clostridium bovipellis Gram+, strictly anaerobic, endospore producing, rods No
Clostridium bowmanii Gram+, strictly anaerobic, endospore producing, rods antarctic freshwater lake mud 1 No
Clostridium butyricum Botulism Gram+, strictly anaerobic, endospore producing, rods Sheep, blood 1 Yes DSM 2478 DSM, DSM 10702T DSM, 900200369 LBK, 21951 RLH
Clostridium cadaveris Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 1284T DSM, 1074_ATCC 25783T BOG
Clostridium caenicola Gram+, strictly anaerobic, endospore producing, rods No
Clostridium caminithermale Gram+, strictly anaerobic, endospore producing, rods No
Clostridium carboxidivorans Gram+, strictly anaerobic, endospore producing, rods soil 1 Yes DSM 15243T DSM
Clostridium carnis Gram+, strictly anaerobic, endospore producing, rods Meat 2 Yes DSM 1293T DSM
Clostridium cavendishii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium celatum Gram+, strictly anaerobic, endospore producing, rods feces 1 No
Clostridium celerecrescens Gram+, strictly anaerobic, endospore producing, rods Yes DSM 5628T DSM, 52 PIM
Clostridium cellobioparum Gram+, strictly anaerobic, endospore producing, rods cattle 1 Yes DSM 1351T DSM
Clostridium cellulofermentans Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium cellulolyticum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium cellulosi Gram+, strictly anaerobic, endospore producing, rods No
Clostridium cellulovorans Gram+, strictly anaerobic, endospore producing, rods No
Clostridium chartatabidum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium chauvoei Gram+, strictly anaerobic, endospore producing, rods Sheep, Cattle 2 Yes 1023_NCTC 8070 BOG, 1024_NCTC 8596 BOG, 1076_ATCC 10092T BOG
Clostridium chromiireducens Gram+, strictly anaerobic, endospore producing, rods No
Clostridium citroniae Gram+, strictly anaerobic, endospore producing, rods peritoneal fluid 2 Yes DSM 19261T DSM
Clostridium clariflavum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium clostridioforme Opportunistic infections Gram-, strictly anaerobic, endospore producing, rods Cattle, feces 1 Yes DSM 933T DSM, 1021_NCTC 11224T BOG, 110706_G8 LUMC
Clostridium cochlearium Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 2153 VML, DSM 666 VML, 1077_ATCC 17787T BOG, 1050_NCTC 2909 BOG, DSM 1285T VML, 1080_ATCC 17794T BOG
Clostridium colicanis Gram+, strictly anaerobic, endospore producing, rods Yes DSM 13634T VML
Clostridium colinum Ulcerative colitis in chicken Gram+, strictly anaerobic, endospore producing, rods Chicken 1 Yes DSM 6011T DSM
Clostridium collagenovorans Gram+, strictly anaerobic, endospore producing, rods sludge 1 Yes DSM 3089T DSM
Clostridium cylindrosporum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium difficile Antibiotic associated diarreha, pseudomembranous colitis Gram+, strictly anaerobic, endospore producing, rods feces 2 Yes 0422_0288_DM IBS, 1020_NCTC 11206 BOG, DSM 12057 DSM, DSM 1296T DSM, MB_1562_05 THL, MB_2559_05 THL, MB_294_05 THL, MB_4499_05 THL, MB_7476_05 THL, MB_7869_05 THL
Clostridium diolis Gram+, strictly anaerobic, endospore producing, rods plants 1 Yes DSM 15410T DSM
Clostridium disporicum Gram+, strictly anaerobic, endospore producing, rods rat colon, rat feces 1 Yes DSM 5521T DSM
Clostridium drakei Gram+, strictly anaerobic, endospore producing, rods sediments 1 Yes DSM 12750T DSM
Clostridium estertheticum ssp. estertheticum Gram+, strictly anaerobic, endospore producing, rods beef meat 1 No
Clostridium estertheticum ssp. laramiense Gram+, strictly anaerobic, endospore producing, rods spoiled meat 1 No
Clostridium fallax Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 2631T DSM
Clostridium felsineum Gram+, strictly anaerobic, endospore producing, rods Soil 1 No
Clostridium filamentosum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium fimetarium Gram+, strictly anaerobic, endospore producing, rods No
Clostridium formicaceticum Gram+, strictly anaerobic, endospore producing, rods Mud 1 Yes DSM 92T DSM
Clostridium frigidicarnis Gram+, strictly anaerobic, endospore producing, rods raw beef meat 1 No
Clostridium frigoris Gram+, strictly anaerobic, endospore producing, rods antarctic freshwater lake mud 1 Yes DSM 14204T DSM
Clostridium ganghwense Gram+, strictly anaerobic, endospore producing, rods No
Clostridium gasigenes Gram+, strictly anaerobic, endospore producing, rods No
Clostridium ghonii Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 15049T DSM
Clostridium glycolicum Gram+, strictly anaerobic, endospore producing, rods Soil 1 Yes 203246 RLH, DSM 13561 DSM, 100617_23 PNU, 100617_52 PNU
Clostridium glycyrrhizinilyticum Gram+, strictly anaerobic, endospore producing, rods Yes DSM 17593T DSM
Clostridium grantii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium haemolyticum Gram+, strictly anaerobic, endospore producing, rods Yes 1069_ATCC 9650T BOG
Clostridium halophilum Gram+, strictly anaerobic, endospore producing, rods Soil 1 Yes DSM 5387T DSM
Clostridium hathewayi Gram+, strictly anaerobic, endospore producing, rods Yes DSM 13479T DSM, DSM 13480 DSM, HU52042 PNU, 15_759 IBS
Clostridium herbivorans Gram+, strictly anaerobic, endospore producing, rods No
Clostridium hiranonis Gram+, strictly anaerobic, endospore producing, rods Yes DSM 13275T DSM
Clostridium histolyticum Gas gangrene Gram+, strictly anaerobic, endospore producing, rods Gangrene tissue 2 Yes 1036_NCTC 503T BOG, DSM 1126 DSM, DSM 2158T DSM
Clostridium homopropionicum Gram+, strictly anaerobic, endospore producing, rods sludge 1 Yes DSM 5847T DSM
Clostridium hungatei Gram+, strictly anaerobic, endospore producing, rods soil 1 No
Clostridium hydrogeniformans Gram+, strictly anaerobic, endospore producing, rods No
Clostridium hylemonae Gram+, strictly anaerobic, endospore producing, rods Yes DSM 15053T DSM
Clostridium indolis Gram+, strictly anaerobic, endospore producing, rods Soil 1 Yes DSM 755T DSM
Clostridium innocuum Opportunistic infections Gram+, strictly anaerobic, endospore producing, rods Abscess 1 Yes 1079_ATCC 14501T BOG, 25_389 IBS, DSM 1286T DSM, HU46588 PNU, HU56448 PNU
Clostridium intestinale Gram+, strictly anaerobic, endospore producing, rods feces 1 Yes DSM 16614 DSM, DSM 6191T DSM
Clostridium irregulare Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 2635T VML
Clostridium isatidis Gram+, strictly anaerobic, endospore producing, rods Yes DSM 15098T_1 VML
Clostridium jejuense Gram+, strictly anaerobic, endospore producing, rods Yes DSM 15929T DSM
Clostridium josui Gram+, strictly anaerobic, endospore producing, rods No
Clostridium kluyveri Gram+, strictly anaerobic, endospore producing, rods No
Clostridium lactatifermentans Gram+, strictly anaerobic, endospore producing, rods Yes DSM 14214T DSM
Clostridium lacusfryxellense Gram+, strictly anaerobic, endospore producing, rods antarctic freshwater lake mud 1 No
Clostridium lavalense Gram+, strictly anaerobic, endospore producing, rods No
Clostridium lentocellum Gram+, strictly anaerobic, endospore producing, rods Feces 1 Yes DSM 5427T DSM
Clostridium leptum Gram+, strictly anaerobic, endospore producing, rods Feces 1 No
Clostridium limosum Gram+, strictly anaerobic, endospore producing, rods Mud 1 Yes DSM 1400T DSM
Clostridium litorale Gram+, strictly anaerobic, endospore producing, rods marine sediments 1 No
Clostridium lituseburense Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium ljungdahlii Gram+, strictly anaerobic, endospore producing, rods water well 1 No
Clostridium lundense Gram+, strictly anaerobic, endospore producing, rods Yes DSM 17049T VML
Clostridium magnum Gram+, strictly anaerobic, endospore producing, rods freshwater sediments 1 Yes DSM 13769 DSM
Clostridium malenominatum Subgingival plaque Gram+, strictly anaerobic, endospore producing, rods Mouth 1 Yes DSM 1127T DSM
Clostridium mangenotii Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium mayombei Gram+, strictly anaerobic, endospore producing, rods termite gut 1 Yes DSM 6539T DSM
Clostridium methoxybenzovorans Gram+, strictly anaerobic, endospore producing, rods soil 1 No
Clostridium methylpentosum Gram+, strictly anaerobic, endospore producing, rods feces 1 No
Clostridium neopropionicum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium nexile Gram+, strictly anaerobic, endospore producing, rods Feces 1 No
Clostridium nitrophenolicum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium novyi Gas gangrene Gram+, strictly anaerobic, endospore producing, rods Gangrene tissue 2 Yes 1082_ATCC 17861T BOG, A 1025_NCTC 538 BOG
Clostridium oceanicum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium oroticum Gram+, strictly anaerobic, endospore producing, rods Soil 1 No
Clostridium papyrosolvens Gram+, strictly anaerobic, endospore producing, rods mud 1 Yes DSM 2782T DSM
Clostridium paradoxum Gram+, strictly anaerobic, endospore producing, rods sludge 1 No
Clostridium paraputrificum Gram+, strictly anaerobic, endospore producing, rods Mud 1 Yes 1083_ATCC 17796 BOG, DSM 2630T DSM, DSM 46280 DSM, 110706_B3 LUMC, AB_8 LGL
Clostridium pascui Gram+, strictly anaerobic, endospore producing, rods No
Clostridium pasteurianum Gram+, strictly anaerobic, endospore producing, rods Plants 1 No
Clostridium peptidivorans Gram+, strictly anaerobic, endospore producing, rods No
Clostridium perfringens Soft tissue infections, food poisoning, enteritis, necroticans, septicemia Gram+, strictly anaerobic, endospore producing, rods Blood, feces 2 Yes DSM 11778_3d VML, DSM 11781 VML, DSM 11784 VML, DSM 628 VML, DSM 756T VML, DSM 798 VML, HU51221 PNU, HU65618 PNU, RV_BA_03_D LBK
Clostridium phytofermentans Gram+, strictly anaerobic, endospore producing, rods soil 1 Yes DSM 18823T DSM
Clostridium polysaccharolyticum Gram+, strictly anaerobic, endospore producing, rods Sheep 1 No
Clostridium populeti Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium propionicum Gram+, strictly anaerobic, endospore producing, rods Mud 1 Yes DSM 1682T DSM, DSM 6251 DSM
Clostridium proteolyticum Gram+, strictly anaerobic, endospore producing, rods chicken manure 1 No
Clostridium psychrophilum Gram+, strictly anaerobic, endospore producing, rods antarctic freshwater lake mud 1 No
Clostridium puniceum Gram+, strictly anaerobic, endospore producing, rods rotting potatoes, soil 1 No
Clostridium purinilyticum Gram+, strictly anaerobic, endospore producing, rods Soil 1 No
Clostridium putrefaciens Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium putrificum Gram+, strictly anaerobic, endospore producing, rods 1 Yes CIP_60.54 DSM
Clostridium quinii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium ramosum Opportunistic infections Gram-, strictly anaerobic, endospore producing, rods Soil, wounds 1 Yes 02_491 IBS, 02_491 N2 IBS, 15_758 IBS, 49 RLT, 94 PIM, DSM 1402T VML, IBS_MS_15 IBS, 470 RLT
Clostridium rectum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium roseum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium saccharobutylicum Gram+, strictly anaerobic, endospore producing, rods soybeans 1 Yes DSM 13864T DSM
Clostridium saccharogumia Gram+, strictly anaerobic, endospore producing, rods Yes DSM 17460T DSM
Clostridium saccharolyticum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium saccharoperbutylacetonicum Gram+, strictly anaerobic, endospore producing, rods Soil 1 No
Clostridium sardiniense Gram+, strictly anaerobic, endospore producing, rods Soil 2 Yes 1001_NCTC 10984T BOG, DSM 600 DSM
Clostridium sartagoforme Gram+, strictly anaerobic, endospore producing, rods 1 Yes 100617_58 PNU, DSM 17125 DSM
Clostridium scatologenes Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium schirmacherense Gram+, strictly anaerobic, endospore producing, rods Yes DSM 17394T VML
Clostridium scindens Gram+, strictly anaerobic, endospore producing, rods Feces 1 Yes 15 RLT, DSM 5676T DSM
Clostridium septicum gas gangrene, septicemia Gram+, strictly anaerobic, endospore producing, rods Blood 2 Yes 1026_NCTC 547T BOG, DSM 7534T_1 VML, GD77 GDD
Clostridium sordellii Gas gangrene, septic shock syndrome Gram+, strictly anaerobic, endospore producing, rods blood,gangrene tissue 2 Yes 1070_ATCC 9714T BOG, DSM 2141T VML
Clostridium sp Gram+, strictly anaerobic, endospore producing, rods Yes DSM 1975 VML, 110324_103 PNU, 110324_14 PNU, 110324_53 PNU, DSM 13576 DSM, DSM 17592T DSM, DSM 5906 DSM
Clostridium sphenoides Gram+, strictly anaerobic, endospore producing, rods 1 Yes 1046_NCTC 507T BOG, DSM 1225 VML, DSM 614 VML, DSM 632T VML
Clostridium spiroforme Gram+, strictly anaerobic, endospore producing, rods Feces 1 Yes 1047_NCTC 11211T BOG
Clostridium sporogenes Opportunistic infections Gram+, strictly anaerobic, endospore producing, rods Wounds, soil 1 Yes 992800235 LBK, DSM 1734 VML, DSM 46278 VML, DSM 46279 VML, DSM 633 VML, DSM 795T VML
Clostridium sporosphaeroides Gram+, strictly anaerobic, endospore producing, rods Wounds, soil 1 Yes DSM 1294T VML
Clostridium sp[2] Gram+, strictly anaerobic, endospore producing, rods Yes 0807M290672 IBS
Clostridium stercorarium ssp. leptospartum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium stercorarium ssp. stercorarium Gram+, strictly anaerobic, endospore producing, rods Compost 1 No
Clostridium stercorarium ssp. thermolacticum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium sticklandii Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium straminisolvens Gram+, strictly anaerobic, endospore producing, rods No
Clostridium subterminale Gram+, strictly anaerobic, endospore producing, rods sludge 1 Yes DSM 2636 VML, DSM 6970T DSM, DSM 758 VML
Clostridium sufflavum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium sulfidigenes Gram+, strictly anaerobic, endospore producing, rods soil, sediments 1 No
Clostridium symbiosum Gram+, strictly anaerobic, endospore producing, rods Soil 1 Yes DSM 934T DSM
Clostridium tagluense Gram+, strictly anaerobic, endospore producing, rods No
Clostridium tepidiprofundi Gram+, strictly anaerobic, endospore producing, rods No
Clostridium termitidis Gram+, strictly anaerobic, endospore producing, rods termite gut 1 No
Clostridium tertium Opportunistic infections Gram+, strictly anaerobic, endospore producing, rods Soil 1 Yes 1048_NCTC 541 BOG, 900500287 LBK, DSM 2485T VML, DSM 662 VML, HU46926 PNU, VA10735_10 ERL
Clostridium tetani tetanus Gram+, strictly anaerobic, endospore producing, rods Feces 2 Yes 1089_ATCC 10779 BOG, DSM 11744 VML, DSM 11745 VML
Clostridium tetani type 1 Gram+, strictly anaerobic, endospore producing, rods Feces 2 Yes 1049_NCTC 279T BOG
Clostridium tetanomorphum Gram+, strictly anaerobic, endospore producing, rods saliva 1 No
Clostridium thermoalcaliphilum Gram+, strictly anaerobic, endospore producing, rods sludge 1 No
Clostridium thermobutyricum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium thermocellum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium thermopalmarium Gram+, strictly anaerobic, endospore producing, rods palm wine 1 Yes DSM 5974T DSM
Clostridium thermopapyrolyticum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium thermosuccinogenes Gram+, strictly anaerobic, endospore producing, rods No
Clostridium thiosulfatireducens Gram+, strictly anaerobic, endospore producing, rods No
Clostridium tunisiense Gram+, strictly anaerobic, endospore producing, rods Yes DSM 15206T DSM
Clostridium tyrobutyricum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium uliginosum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium ultunense Gram+, strictly anaerobic, endospore producing, rods biogas reactor 1 No
Clostridium vincentii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium viride Gram+, strictly anaerobic, endospore producing, rods sludge 1 No
Clostridium xylanovorans Gram+, strictly anaerobic, endospore producing, rods plants 1 Yes DSM 12503T DSM
Cohnella arctica No
Cohnella damuensis No
Cohnella fontinalis Yes QBR_3884 QBC
Cohnella ginsengisoli No
Cohnella hongkongensis Yes DSM 17642T DSM
Cohnella laeviribosi No
Cohnella luojiensis No
Cohnella panacarvi No
Cohnella phaseoli No
Cohnella soli No
Cohnella suwonensis No
Cohnella terrae No
Cohnella thailandensis No
Cohnella thermotolerans No
Cohnella xylanilytica No
Cohnella yongneupensis No
Colletotrichum gloeosporioides Infects plants fungus Yes CBS 100471 CBS
Collinsella aerofaciens Yes DSM 13712 DSM, DSM 3979T DSM
Collinsella intestinalis No
Collinsella stercoris No
Collinsella tanakaei No
Comamonas aquatica Yes LMG 2370T HAM
Comamonas badia No
Comamonas composti No
Comamonas denitrificans No
Comamonas granuli No
Comamonas kerstersii Yes DSM 16026T HAM
Comamonas koreensis No
Comamonas nitrativorans Yes DSM 13191T HAM
Comamonas odontotermitis No
Comamonas terrigena Yes DSM 7099T HAM
Comamonas testosteroni Yes DSM 50244T HAM, B337 UFL
Comamonas thiooxydans No
Comamonas zonglianii No
Coprobaccilus cateniformis Yes 776012 RLH
Corynebacterium accolens Yes DSM 44278T DSM, 87_D5_coll ISB, x_x_28779_H IBS, 8 RLT
Corynebacterium afermentans ssp afermentans Yes 78_D4_coll ISB, DSM 44280T DSM, 74_D4_coll ISB, 73_D4_coll ISB, 72_D4_coll ISB
Corynebacterium afermentans ssp lipophilum Yes DSM 44282T DSM
Corynebacterium ammoniagenes Yes IMET 11243T HKJ, DSM 20306T DSM
Corynebacterium amycolatum Yes IBS_MS_3 IBS, IBS_MS_16 IBS, 128_x_A5608_63 IBS, PX_25086111 MLD, DSM 6922T DSM, 100_28_B77962_42 IBS
Corynebacterium appendicis Yes DSM 44531T DSM
Corynebacterium aquilae Yes DSM 44791T DSM
Corynebacterium argentoratense Yes DSM 44202T DSM, 111_19_B2155_53 IBS, 249 RLT
Corynebacterium atypicum No
Corynebacterium aurimucosum Yes DSM 44827 DSM, DSM 44532T DSM, 993900021 LBK, 991800383 LBK, 25 PIM
Corynebacterium auris Yes DSM 44122T DSM
Corynebacterium auriscanis Yes DSM 44609T DSM
Corynebacterium beticola No
Corynebacterium bovis Yes DSM 20582T DSM, GD10 GDD
Corynebacterium callunae Yes DSM 20147T DSM
Corynebacterium camporealensis Yes DSM 44610T DSM
Corynebacterium canis No
Corynebacterium capitovis Yes DSM 44611T DSM
Corynebacterium casei Yes DSM 44701T DSM
Corynebacterium caspium No
Corynebacterium ciconiae Yes DSM 44920T DSM
Corynebacterium confusum Yes DSM 44384T DSM, 287 RLT
Corynebacterium coyleae Yes DSM 44184T DSM, 153 RLT
Corynebacterium cystitidis Yes DSM 20524T DSM
Corynebacterium deserti No
Corynebacterium diphtheriae Diphteria (respiratory and cutaneous) Aerobic or facultatively anaerobic gram+ rods Mucosal surfaces, skin samples 2 Yes 1G12072319_3e MVD, DSM 44123T DSM 2
Corynebacterium diphtheriae ssp belfanti 2 Yes 44_R9 ISB
Corynebacterium diphtheriae ssp gravis 2 Yes 50_R5 ISB
Corynebacterium diphtheriae ssp mitis 2 Yes R1_36_29 ISB
Corynebacterium doosanense No
Corynebacterium durum Yes C16 MVO, DSM 44351 DSM
Corynebacterium efficiens Yes DSM 44549T DSM
Corynebacterium falsenii Yes DSM 44353T DSM
Corynebacterium felinum Yes DSM 44508T DSM
Corynebacterium flavescens Yes IMET 11080T HKJ, DSM 20296T DSM, HKI 11080T HKJ
Corynebacterium freiburgense No
Corynebacterium freneyi Yes DSM 44506T DSM
Corynebacterium glaucum Yes DSM 44530T DSM, BK03351_07 ERL
Corynebacterium glucuronolyticum Yes 4_B2825 ISB, 1_B12915 ISB, DSM 44120T DSM, DSM 44288 DSM
Corynebacterium glutamicum Yes IMET 10482T HKJ, DSM 20300T DSM, GD11 GDD, DSM 20301 DSM 2, DSM 20137 DSM 2
Corynebacterium halotolerans Yes DSM 44683T DSM
Corynebacterium hansenii Yes DSM 45109T DSM
Corynebacterium hoagii No
Corynebacterium humireducens No
Corynebacterium ilicis No
Corynebacterium imitans Yes DSM 44264T DSM
Corynebacterium jeikeium Septicemia, endocarditis, wound infections, foreign body infections Aerobic or facultatively anaerobic gram+ rods Blood samples, wound swab 2 Yes 27_B30049 ISB, VA_3882_07_13 UKE, DSM 7171T DSM, B73970 ISB, 32_T98977 ISB, 30_CIP 103337T ISB, 118 RLT
Corynebacterium kroppenstedtii Yes VA_3882_07_13 UKE, DSM 7171T DSM, B73970 ISB, 32_T98977 ISB, 30_CIP 103337T ISB
Corynebacterium kutscheri Yes DSM 20755T DSM
Corynebacterium lipophile Yes grpe F1 115_D5coll_5311_66 IBS
Corynebacterium lipophiloflavum Yes DSM 44291T DSM
Corynebacterium lubricantis No
Corynebacterium macginleyi Yes DSM 44284T DSM, 120_D5coll_104099_71 IBS
Corynebacterium marinum No
Corynebacterium maris No
Corynebacterium massiliense No
Corynebacterium mastitidis Yes DSM 44356T DSM, DSM 44355 DSM, DSM 44354 DSM
Corynebacterium matruchotii Yes DSM 20635T DSM
Corynebacterium minutissimum Yes x_x_10288_E IBS, DSM 20651T DSM, 99_25_CCUG 27045_41 IBS, 104_25_CCUG 36888_46 IBS, BK03540_09 ERL, VA14954_09 ERL
Corynebacterium mucifaciens Yes DSM 44265T DSM, CS 31_5 BRB, C19 MVO, BK03357_08 ERL, Cory_40 IBS, CS 678_4 BRB
Corynebacterium mustelae No
Corynebacterium mycetoides Yes DSM 20632T DSM
Corynebacterium nuruki No
Corynebacterium phocae Yes DSM 44612T DSM
Corynebacterium pilbarense No
Corynebacterium pilosum Yes DSM 20521T DSM
Corynebacterium propinquum Yes 80_D4_coll ISB, 83_D4_coll ISB, 168 RLT, DSM 44285T DSM 2
Corynebacterium pseudodiphtheriticum Yes MB_7369_05 THL, DSM 46628 DSM, ATCC 10701 THL, 10036853_101 USH, DSM 44287T DSM 2
Corynebacterium pseudotuberculosis Yes 64_D6_coll ISB, 62_D6_coll ISB, DSM 20689T DSM, x_x_102968_C IBS, 59_D6_coll ISB, GD7 GDD, GD8 GDD
Corynebacterium pyruviciproducens No
Corynebacterium renale Yes DSM 20688T DSM, GD12 GDD, GD87 GDD
Corynebacterium resistens Yes DSM 45100T DSM
Corynebacterium riegelii Yes DSM 44326T DSM
Corynebacterium simulans Yes DSM 44415T DSM
Corynebacterium singulare Yes DSM 44357T DSM
Corynebacterium sp Yes DSM 44792T DSM, 901400365 LBK, 901600604 LBK, DSM 6688 DSM, DSM 44792T DSM, 294 RLT, GD14 GDD
Corynebacterium sphenisci Yes DSM 44792T DSM
Corynebacterium spheniscorum Yes DSM 44757T DSM
Corynebacterium sputi No
Corynebacterium stationis Yes DSM 20302T DSM
Corynebacterium striatum Yes PX_21086308 MLD, MB_8820_05 THL, DSM 20668T DSM, 23086514 MLD, 12_B25690 ISB, 10_G1799 ISB, 143 RLT
Corynebacterium suicordis Yes DSM 45110T DSM
Corynebacterium sundsvallense Yes DSM 44613T DSM, LB151024_11 ERL
Corynebacterium terpenotabidum Yes DSM 44721T DSM
Corynebacterium testudinoris Yes DSM 44614T DSM
Corynebacterium thomssenii Yes DSM 44276T DSM
Corynebacterium tuberculostearicum Yes Isolat Bre07 HED, DSM 44922T DSM, CS 678_3 BRB
Corynebacterium tuscaniense Yes DSM 45101T DSM
Corynebacterium ulcerans Yes 66_D6_coll ISB, 67_D6_coll ISB, 71_D6_coll ISB, DSM 46325T DSM, VA22435_07 ERL
Corynebacterium ulceribovis No
Corynebacterium urealyticum Urinary tract infections, septicimia, endocarditis, wound infections Aerobic or facultatively anaerobic gram+ rods Blood samples, urine samples, wound swab 2 Yes x_x_43042_J IBS, DSM 7111 DSM, DSM 7110 DSM, DSM 7109T DSM, 25_A25651 ISB, 24_A8761 ISB, 20_CU47 ISB
Corynebacterium ureicelerivorans Yes DSM 45051T DSM
Corynebacterium variabile Yes DSM 44702 DSM, DSM 20132T DSM
Corynebacterium vitaeruminis Yes DSM 20294T DSM
Corynebacterium xerosis Yes DSM 20743T DSM
Cronobacter dublinensis No
Cronobacter dublinensis ssp. dublinensis No
Cronobacter dublinensis ssp. lactaridi No
Cronobacter dublinensis ssp. lausannensis No
Cronobacter malonaticus No
Cronobacter muytjensii No
Cronobacter sakazakii Yes DSM 4485T DSM, CCM 3479 CCM, CCM 3461 CCM, CCM 3460 CCM, CCM 1902 CCM
Cronobacter turicensis No
Cryptococcus albidosimilis Yeast Yes CBS 10184 CBS, CBS 8626 CBS
Cryptococcus curvatus Yeast Yes CBS 5163 CBS, CBS 570T CBS
Cryptococcus diffluens Yeast Yes CBS 10266 CBS, CBS 160T CBS, CBS 926 CBS
Cryptococcus flavescens Yeast Yes CBS 6474 CBS, CBS 8645 CBS
Cryptococcus flavus Yeast (Fungus) 2 Yes DSM 70227T DSM
Cryptococcus gastricus Yeast Yes CBS 2288T CBS, CBS 7016 CBS
Cryptococcus humicola Yeast Yes CBS 2041 CBS, CBS 571T CBS
Cryptococcus laurentii Yeast (Fungus) 2 Yes VML
Cryptococcus liquefaciens Yeast Yes CBS 968T CBS
Cryptococcus macerans Yeast (Fungus) 2 Yes DSM 70822T DSM
Cryptococcus magnus Yeast Yes CBS 140T CBS, CBS 4685 CBS, CBS 8361 CBS
Cryptococcus neoformans Yeast (Fungus) 2 Yes ATCC 14116 THL, CCM 8312 CCM, RV07_02 18 VML, 29 PSB
Cryptococcus saitoi Yeast Yes CBS 1734 CBS, CBS 1975T CBS, CBS 5106 CBS
Cryptococcus terreus Yeast Yes DSM 70222 DSM
Cryptococcus uzbekistanensis Yeast Yes CBS 8683T CBS, CBS 5737 CBS
Cryptococcus vishniacii Yeast Yes CBS 8142 CBS, CBS 8100 CBS, CBS 7110T CBS
Cryptococcus vishniacii var vishniacii Yeast Yes CBS 7158 CBS
Cryptococcus_albidus[ana]# Filobasidium_floriforme[teleo]) Yeast (Fungus) 2 Yes DSM 70197 PAH
Cryptococcus_gattii[ana]# (Filobasidiella_bacillispora[teleo]) Yeast (Fungus) 2 Yes RV490_Oct09_01 LBK, RV490_Sep09_1 SLT
Cryptococcus_uniguttulatus[ana] (Filobasidium_uniguttulatum[teleo]#) Yeast (Fungus) 2 Yes DSM 4652 DSM, DSM 70225 DSM, H051_08 ERL
Cupriavidus basilensis Aerobic or facultatively anaerobic gram- rods No
Cupriavidus campinensis Aerobic or facultatively anaerobic gram- rods Yes DSM 17293T DSM
Cupriavidus gilardii Infections, sepsis Aerobic or facultatively anaerobic gram- rods cerebrospinal fluid, blood 2 Yes DSM 17292T DSM, UR5273_09 ERL
Cupriavidus laharis Aerobic or facultatively anaerobic gram- rods No
Cupriavidus metallidurans Aerobic or facultatively anaerobic gram- rods Yes DSM 2839T DSM
Cupriavidus necator Nonpathogenic Aerobic or facultatively anaerobic gram- rods Soil samples 1 Yes DSM 428 DSM, DSM 531 HAM, B238 UFL, B619 UFL, B479 UFL, B480 UFL, B394 UFL
Cupriavidus oxalaticus Aerobic or facultatively anaerobic gram- rods Yes DSM 428 DSM, DSM 531 HAM, B238 UFL, B619 UFL
Cupriavidus pampae Aerobic or facultatively anaerobic gram- rods No
Cupriavidus pauculus Aerobic or facultatively anaerobic gram- rods Yes VA_31954_09 ERL, UR01767_08 ERL, RV_00001_09 ERL, RV 412_0209_1 LBK, DSM 17313T DSM
Cupriavidus pinatubonensis Aerobic or facultatively anaerobic gram- rods No
Cupriavidus respiraculi Aerobic or facultatively anaerobic gram- rods Yes DSM 17358T DSM, BK1724 EVM
Cupriavidus sp. [1] Yes VA15406_09 ERL
Cupriavidus taiwanensis Aerobic or facultatively anaerobic gram- rods No
Curtobacterium albidum Yes HKI 11500 HKJ Synonym Brevibacterium albidum
Curtobacterium ammoniigenes No
Curtobacterium citreum No
Curtobacterium flaccumfaciens pvar poinsettiae Yes DSM 20149 DSM
Curtobacterium ginsengisoli No
Curtobacterium herbarum No
Curtobacterium luteum Yes P_3183_1 IMK, HKI 10360 HKJ
Curtobacterium plantarum No
Curtobacterium pusillum No
Curtobacterium sp Yes 68 PIM
Cyberlindnera mississippiensis Yeast Yes CBS 7027 CBS, CBS 7026 CBS, CBS 7025 CBS, CBS 7024 CBS, CBS 7023 CBS