| Edwardsiella hoshinae |
|
|
|
|
Yes |
DSM 13771T HAM |
|
|
| Edwardsiella ictaluri |
|
|
|
|
Yes |
CECT 885T EGS, DSM 13697T HAM |
|
|
| Edwardsiella tarda |
|
|
|
|
Yes |
ATCC 35_1 EGS, ATCC 36_1 EGS, CECT 849T EGS, DSM 30052T HAM, HL23_1 EGS, NCIMB EGS |
|
|
| Eggerthella lenta |
|
|
|
|
Yes |
0807M25073601 IBS, 9 RLT, 17 RLT, DSM 15644 DSM, DSM 2243T DSM, LA10142401 LZR |
|
|
| Eggerthella sinensis |
|
|
|
|
No |
|
|
|
| Eggerthia catenaformis |
|
|
|
|
Yes |
07_085 ANA IBS, CIP 104817T B CIP, IBS_MS_39 IBS, VA12065_1_11 ERL |
|
Synonym Eggerthia catenaformis |
| Eikenella corrodens |
|
|
|
|
Yes |
26002_1b LSM, DSM 8340T DSM |
|
|
| Elizabethkingia anophelis |
|
|
|
|
No |
|
|
|
| Elizabethkingia meningoseptica |
|
|
|
|
Yes |
DSM 2800T HAM, CCM 2719T CCM, 002_NEB14 NFI |
|
|
| Elizabethkingia miricola |
|
|
|
|
Yes |
DSM 14571T HAM |
|
|
| Emericella nidulans (teleo) Asperillus nidulans (ana) |
|
Fungus |
|
|
Yes |
VML |
|
|
| Empedobacter brevis |
|
|
|
|
Yes |
LMG 4011T HAM, VA_00481_09 ERL |
|
|
| Engyodontium parvisporum |
|
Fungus |
Environment |
1 |
No |
|
IHEM 22910 HKU |
|
| Engyodontium rectidentatum |
|
Fungus |
Environment |
1 |
No |
|
CBS 206.74 HKU, CBS 547.82 HKU, CBS 641.74 HKU |
|
| Enterobacter aerogenes |
|
|
|
|
Yes |
15282_1 CHB, ATCC 13048T THL, DSM 30053T HAM |
|
|
| Enterobacter amnigenus |
|
|
|
|
Yes |
DSM 30055 DSM, DSM 4486T DSM |
|
|
| Enterobacter arachidis |
|
|
|
|
No |
|
|
|
| Enterobacter asburiae |
|
|
|
|
Yes |
CCM 4032 CCM, CCM 4032 CCM, DSM 17506T DSM, RV412_A1_2010_05 LBK |
|
|
| Enterobacter cancerogenus |
|
|
|
|
Yes |
DSM 17580T DSM |
|
|
| Enterobacter cloacae |
|
|
|
|
Yes |
13159_1 CHB, 20105_2 CHB, DSM 30060 DSM, DSM 30062 DSM, DSM 3264 DSM, DSM 46348 DSM, DSM 6234 DSM, MB11506_1 CHB, MB_8779_05 THL, MB_5277_05 THL |
|
|
| Enterobacter cloacae ssp cloacae |
|
|
|
|
Yes |
DSM 30054T HAM |
|
|
| Enterobacter cloacae ssp dissolvens |
|
|
|
|
Yes |
DSM 16657T HAM |
|
|
| Enterobacter cowanii |
|
|
|
|
Yes |
DSM 18146T DSM |
|
renamed as Kosakonia cowanii |
| Enterobacter gergoviae |
|
|
|
|
Yes |
CCM 3459 CCM, CCM 3475 CCM, DSM 9245T HAM |
|
|
| Enterobacter helveticus |
|
|
|
|
No |
|
|
|
| Enterobacter hormaechei ssp hormaechei |
|
|
|
|
Yes |
DSM 12409T DSM |
|
|
| Enterobacter kobei |
|
|
|
|
Yes |
DSM 13645T DSM |
|
|
| Enterobacter ludwigii |
|
|
|
|
Yes |
DSM 16688T DSM |
|
|
| Enterobacter mori |
|
|
|
|
No |
|
|
|
| Enterobacter nimipressuralis |
|
|
|
|
No |
|
|
|
| Enterobacter oryzae |
|
|
|
|
No |
|
|
|
| Enterobacter pulveris |
|
|
|
|
No |
|
|
|
| Enterobacter pyrinus |
|
|
|
|
Yes |
DSM 12410T DSM, DSM 12410T HAM |
|
|
| Enterobacter radicincitans |
|
|
|
|
Yes |
DSM 16656T DSM |
|
renamed as Kosakonia radicincitans |
| Enterobacter soli |
|
|
|
|
No |
|
|
|
| Enterobacter turicensis |
|
|
|
|
No |
|
|
|
| Enterococcus aquimarinus |
|
|
|
|
Yes |
DSM 17690T JUG |
|
|
| Enterococcus asini |
|
|
|
|
Yes |
DSM 11492T JUG |
|
|
| Enterococcus avium |
|
|
|
|
Yes |
96 PIM, 125 RLT, DSM 20063 DSM, DSM 20679T JUG |
|
|
| Enterococcus caccae |
|
|
|
|
Yes |
DSM 19114T JUG |
|
|
| Enterococcus camelliae |
|
|
|
|
No |
|
|
|
| Enterococcus canintestini |
|
|
|
|
Yes |
DSM 21207T JUG, P_3828_1 IMK |
|
|
| Enterococcus canis |
|
|
|
|
Yes |
DSM 17029T JUG |
|
|
| Enterococcus casseliflavus |
|
|
|
|
Yes |
DSM 20382 DSM, DSM 20680T DSM, DSM 4841 DSM, DSM 7370 DSM, DSM 7371 DSM, DSM 7372 DSM |
|
|
| Enterococcus cecorum |
|
|
|
|
Yes |
DSM 20682T JUG, DSM 20683 DSM, GD1 GDD, GD2 GDD |
|
|
| Enterococcus columbae |
|
|
|
|
Yes |
DSM 7374T DSM |
|
|
| Enterococcus devriesei |
|
|
|
|
Yes |
DSM 22802T JUG |
|
|
| Enterococcus dispar |
|
|
|
|
Yes |
DSM 6630T JUG |
|
|
| Enterococcus durans |
|
|
|
|
Yes |
DSM 20633T DSM |
|
|
| Enterococcus faecalis |
Bacteremia, intraabdominal abscess, urinary tract infection, endocarditis |
Aerobic or facultatively anaerobic Gram+ cocci |
Blood samples, urine samples, feces samples |
2 |
Yes |
20247_4 CHB, ATCC 29212 CHB, ATCC 7080 THL, DSM 20371 DSM, DSM 20409 DSM, DSM 20478T JUG, DSM 2570 DSM, DSM 6134 DSM |
|
|
| Enterococcus faecium |
Bacteremia, intraabdominal abscess, urinary tract infection, endocarditis |
Aerobic or facultatively anaerobic Gram+ cocci |
Blood samples, urine samples, feces samples |
2 |
Yes |
11037 CHB, 20218_1 CHB, DSM 13589 DSM, DSM 17050 DSM, DSM 2146 DSM, DSM 2918 DSM, DSM 6177 DSM, PX_21086109_III MLD, VRE_PX_16086218 MLD |
|
|
| Enterococcus gallinarum |
|
|
|
|
Yes |
DSM 20717 DSM, DSM 20628T JUG, DSM 20718 DSM |
|
|
| Enterococcus gilvus |
|
|
|
|
Yes |
DSM 15689T JUG |
|
|
| Enterococcus haemoperoxidus |
|
|
|
|
Yes |
DSM 15920T JUG |
|
|
| Enterococcus hermanniensis |
|
|
|
|
Yes |
DSM 17122T JUG |
|
|
| Enterococcus hirae |
|
|
|
|
Yes |
DSM 20160T DSM, 139 RLT, DSM 3320 DSM, IBS_MS_18 IBS |
|
|
| Enterococcus italicus |
|
|
|
|
Yes |
DSM 15952T JUG |
|
|
| Enterococcus malodoratus |
|
|
|
|
Yes |
DSM 20681T DSM, VA_20209_09 ERL |
|
|
| Enterococcus moraviensis |
|
|
|
|
Yes |
DSM 15919T JUG |
|
|
| Enterococcus mundtii |
|
|
|
|
Yes |
DSM 4838T DSM, DSM 4839 DSM, DSM 4840 DSM |
|
|
| Enterococcus pallens |
|
|
|
|
Yes |
DSM 15690T JUG |
|
|
| Enterococcus phoeniculicola |
|
|
|
|
Yes |
DSM 14726T JUG |
|
|
| Enterococcus pseudoavium |
|
|
|
|
Yes |
DSM 5632T DSM |
|
|
| Enterococcus raffinosus |
|
|
|
|
Yes |
DSM 5633T DSM, BK1847 EVM |
|
|
| Enterococcus ratti |
|
|
|
|
Yes |
DSM 15687T JUG |
|
|
| Enterococcus saccharolyticus |
|
|
|
|
Yes |
DSM 20726T JUG |
|
|
| Enterococcus silesiacus |
|
|
|
|
Yes |
DSM 22801T JUG |
|
|
| Enterococcus sulfureus |
|
|
|
|
Yes |
DSM 6905T JUG |
|
|
| Enterococcus termitis |
|
|
|
|
Yes |
DSM 22803T JUG |
|
|
| Enterococcus thailandicus |
|
|
|
|
Yes |
DSM 21767T JUG |
|
|
| Enterococcus viikkiensis |
|
|
|
|
No |
|
|
|
| Enterococcus villorum |
|
|
|
|
Yes |
DSM 15688T JUG |
|
|
| Epidermophyton floccosum |
tinea pedis, tinea cruris, tinea corporis, and onychomycosis |
Fungus |
Skin |
2 |
Yes |
27 VML |
|
|
| Erwinia amylovora |
|
|
|
|
Yes |
1_79 MMG, 273 MMG, CFBP 1232T MMG, CFBP 1232T PAH, MR1 MMG |
|
|
| Erwinia billingiae |
|
|
|
|
Yes |
660 MMG, DSM 17872T HAM, 661 MMG, EB 661 PAH |
|
|
| Erwinia mallotivora |
|
|
|
|
Yes |
CFBP 2503T MMG, DSM 4565T HAM |
|
|
| Erwinia oleae |
|
|
|
|
No |
|
|
|
| Erwinia papayae |
|
|
|
|
Yes |
DSM 16540T HAM |
|
|
| Erwinia persicina |
|
|
|
|
No |
|
|
|
| Erwinia persicina |
|
|
|
|
Yes |
CFBP 3622T PAH, LMG 11254T HAM, MMG |
|
|
| Erwinia piriflorinigrans |
|
|
|
|
No |
|
|
|
| Erwinia psidii |
|
|
|
|
Yes |
CFBP 3627T MMG, DSM 17597T HAM |
|
|
| Erwinia pyrifoliae |
|
|
|
|
Yes |
16_96 MMG, 1_96 MMG, DSM 12163T HAM, Ejp557 MMG, Ep 16_96 PAH, Ep 1_96 PAH |
|
|
| Erwinia rhapontici |
|
|
|
|
Yes |
CFBP 3618T PAH, DSM 4484T HAM, MMG |
|
|
| Erwinia sp. |
|
|
|
|
Yes |
10w414559 RLH |
|
|
| Erwinia tasmaniensis |
|
|
|
|
Yes |
1_99 MMG, 2_99 MMG, 4_99 MMG, Et 1_99 PAH, Et 2_99 PAH |
|
|
| Erwinia toletana |
|
|
|
|
No |
|
|
|
| Erwinia tracheiphila |
|
|
|
|
Yes |
DSM 21139T DSM |
|
|
| Erwinia typographi |
|
|
|
|
No |
|
|
|
| Erysipelothrix inopinata |
|
|
|
|
Yes |
DSM 15511T DSM |
|
|
| Erysipelothrix rhusiopathiae |
Erysipeloid (cellulitis with painful, pruritic skin lesions) |
Aerobic or facultatively anaerobic gram+ rods |
|
2 |
Yes |
B9788 IBS, DSM 5055T DSM, DSM 5056 DSM, DSM 5057 DSM, DSM 5058 DSM, EDQM Serotyp1 FLR, EDQM Serotyp2 FLR, ERY604 IBS, ERYB19478 IBS, FF XI SerotypN FLR |
|
|
| Erysipelothrix tonsillarum |
|
|
|
|
Yes |
DSM 14972T DSM |
|
|
| Escherichia albertii |
|
|
|
|
Yes |
DSM 17582T HAM |
|
|
| Escherichia coli |
|
|
|
|
Yes |
ATCC 25922 CHB, ATCC 35218 CHB, ATCC 25922 THL, B421 UFL, DH5alpha BRL, DSM 30083T HAM, ESBL_EA_RSS_1528T CHB, MB11464_1 CHB, Nissl VML, RV412_A1_2010_06a LBK, W3350 MMG |
|
|
| Escherichia fergusonii |
|
|
|
|
Yes |
DSM 13698 HAM |
|
|
| Escherichia hermannii |
|
|
|
|
Yes |
12048047 MVD, CS 573_1a BRB, DSM 4560T DSM |
|
|
| Escherichia vulneris |
|
|
|
|
Yes |
DSM 4564T DSM |
|
|
| Eubacterium acidaminophilum |
|
|
|
|
No |
|
|
|
| Eubacterium aggregans |
|
|
|
|
No |
|
|
|
| Eubacterium angustum |
|
|
|
|
No |
|
|
|
| Eubacterium barkeri |
|
|
|
|
No |
|
|
|
| Eubacterium biforme |
|
|
|
|
No |
|
|
|
| Eubacterium brachy |
|
|
|
|
Yes |
DSM 3990T DSM |
|
|
| Eubacterium budayi |
|
|
|
|
No |
|
|
|
| Eubacterium callanderi |
|
|
|
|
Yes |
IBS_MS_40 IBS |
|
|
| Eubacterium cellulosolvens |
|
|
|
|
No |
|
|
|
| Eubacterium combesii |
|
|
|
|
No |
|
|
|
| Eubacterium contortum |
|
|
|
|
No |
|
|
|
| Eubacterium coprostanoligenes |
|
|
|
|
No |
|
|
|
| Eubacterium cylindroides |
|
|
|
|
No |
|
|
|
| Eubacterium desmolans |
|
|
|
|
No |
|
|
|
| Eubacterium dolichum |
|
|
|
|
No |
|
|
|
| Eubacterium eligens |
|
|
|
|
No |
|
|
|
| Eubacterium fissicatena |
|
|
|
|
No |
|
|
|
| Eubacterium hadrum |
|
|
|
|
No |
|
|
|
| Eubacterium hallii |
|
|
|
|
No |
|
|
|
| Eubacterium infirmum |
|
|
|
|
No |
|
|
|
| Eubacterium lentum |
|
|
|
|
No |
|
|
|
| Eubacterium limosum |
|
|
|
|
Yes |
11 RLT, DSM 20517 DSM, DSM 20543T DSM, DSM 2593 DSM, DSM 2594 DSM |
|
|
| Eubacterium minutum |
|
|
|
|
No |
|
|
|
| Eubacterium moniliforme |
|
|
|
|
No |
|
|
|
| Eubacterium multiforme |
|
|
|
|
No |
|
|
|
| Eubacterium nitritogenes |
|
|
|
|
No |
|
|
|
| Eubacterium nodatum |
|
|
|
|
No |
|
|
|
| Eubacterium oxidoreducens |
|
|
|
|
No |
|
|
|
| Eubacterium plexicaudatum |
|
|
|
|
No |
|
|
|
| Eubacterium pyruvativorans |
|
|
|
|
No |
|
|
|
| Eubacterium ramulus |
|
|
|
|
No |
|
|
|
| Eubacterium rectale |
|
|
|
|
No |
|
|
|
| Eubacterium ruminantium |
|
|
|
|
No |
|
|
|
| Eubacterium saburreum |
|
|
|
|
No |
|
|
|
| Eubacterium saphenum |
|
|
|
|
No |
|
|
|
| Eubacterium siraeum |
|
|
|
|
No |
|
|
|
| Eubacterium sp[2] |
|
|
|
|
Yes |
09_28_02 Bplus IBS |
|
|
| Eubacterium sulci |
|
|
|
|
No |
|
|
|
| Eubacterium tarantellae |
|
|
|
|
No |
|
|
|
| Eubacterium tenue |
|
|
|
|
No |
|
|
|
| Eubacterium tortuosum |
|
|
|
|
No |
|
|
|
| Eubacterium uniforme |
|
|
|
|
No |
|
|
|
| Eubacterium ventriosum |
|
|
|
|
No |
|
|
|
| Eubacterium xylanophilum |
|
|
|
|
No |
|
|
|
| Eubacterium yurii |
|
|
|
|
Yes |
10 RLT |
|
|
| Eubacterium yurii ssp. margaretiae |
|
|
|
|
No |
|
|
|
| Eubacterium yurii ssp. schtitka |
|
|
|
|
No |
|
|
|
| Eubacterium yurii ssp. yurii |
|
|
|
|
No |
|
|
|
| Ewingella americana |
Oppurtunistic pathogen infects immunocompromized patients |
Gram-, rod, aerobe |
wounds, sputum, urine, feces, blood, conjunctiva and peritoneal dialysate |
|
Yes |
19_QK 122 MHH, DSM 4580T HAM, RV412_A1_2010_01 LBK |
|
|
| Exiguobacterium aurantiacum |
|
|
|
|
Yes |
290 RLT |
|
|
| Exiguobacterium sp |
|
|
|
|
Yes |
%5B4%5D 10_0147905_007_01 LGL, %5B4%5D 10_0147905_008_01 LGL, %5B4%5D 911600255 LBK |
|
|
| Exophiala dermatitidis |
|
Yeast-like fungus |
|
|
Yes |
NRZ_133 LFH, RVE_08I VML, VML |
|
|