Struts Problem Report

Stacktraces

javax.persistence.PersistenceException: org.hibernate.exception.JDBCConnectionException: could not extract ResultSet

    org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:154)
    org.hibernate.query.internal.AbstractProducedQuery.list(AbstractProducedQuery.java:1626)
    se.smi.spectra.db.persistance.DatabaseHandler.getAllOrganisms(DatabaseHandler.java:312)
    se.smi.spectra.weblogic.actions.database.BrukerAction.execute(BrukerAction.java:30)
    jdk.internal.reflect.GeneratedMethodAccessor80.invoke(Unknown Source)
    java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    java.base/java.lang.reflect.Method.invoke(Method.java:566)
    ognl.OgnlRuntime.invokeMethodInsideSandbox(OgnlRuntime.java:1266)
    ognl.OgnlRuntime.invokeMethod(OgnlRuntime.java:1251)
    ognl.OgnlRuntime.callAppropriateMethod(OgnlRuntime.java:1969)
    ognl.ObjectMethodAccessor.callMethod(ObjectMethodAccessor.java:68)
    com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethodWithDebugInfo(XWorkMethodAccessor.java:98)
    com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethod(XWorkMethodAccessor.java:90)
    ognl.OgnlRuntime.callMethod(OgnlRuntime.java:2045)
    ognl.ASTMethod.getValueBody(ASTMethod.java:97)
    ognl.SimpleNode.evaluateGetValueBody(SimpleNode.java:212)
    ognl.SimpleNode.getValue(SimpleNode.java:258)
    ognl.Ognl.getValue(Ognl.java:537)
    ognl.Ognl.getValue(Ognl.java:501)
    com.opensymphony.xwork2.ognl.OgnlUtil$3.execute(OgnlUtil.java:492)
    com.opensymphony.xwork2.ognl.OgnlUtil.compileAndExecuteMethod(OgnlUtil.java:544)
    com.opensymphony.xwork2.ognl.OgnlUtil.callMethod(OgnlUtil.java:490)
    com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:438)
    com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:293)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:254)
    org.apache.struts2.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:250)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.DefaultWorkflowInterceptor.doIntercept(DefaultWorkflowInterceptor.java:179)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.validator.ValidationInterceptor.doIntercept(ValidationInterceptor.java:263)
    org.apache.struts2.interceptor.validation.AnnotationValidationInterceptor.doIntercept(AnnotationValidationInterceptor.java:49)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ConversionErrorInterceptor.doIntercept(ConversionErrorInterceptor.java:142)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:140)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:140)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:201)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.MultiselectInterceptor.intercept(MultiselectInterceptor.java:67)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.DateTextFieldInterceptor.intercept(DateTextFieldInterceptor.java:133)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.CheckboxInterceptor.intercept(CheckboxInterceptor.java:89)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:243)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ModelDrivenInterceptor.intercept(ModelDrivenInterceptor.java:101)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ScopedModelDrivenInterceptor.intercept(ScopedModelDrivenInterceptor.java:142)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ChainingInterceptor.intercept(ChainingInterceptor.java:160)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.PrepareInterceptor.doIntercept(PrepareInterceptor.java:175)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:121)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.ServletConfigInterceptor.intercept(ServletConfigInterceptor.java:167)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.AliasInterceptor.intercept(AliasInterceptor.java:228)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ExceptionMappingInterceptor.intercept(ExceptionMappingInterceptor.java:196)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.factory.StrutsActionProxy.execute(StrutsActionProxy.java:48)
    org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:574)
    org.apache.struts2.dispatcher.ExecuteOperations.executeAction(ExecuteOperations.java:79)
    org.apache.struts2.dispatcher.filter.StrutsPrepareAndExecuteFilter.doFilter(StrutsPrepareAndExecuteFilter.java:141)
    org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
    org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
    org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:197)
    org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
    org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:543)
    org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:135)
    org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
    org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:698)
    org.apache.catalina.valves.RemoteIpValve.invoke(RemoteIpValve.java:769)
    org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
    org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:367)
    org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:639)
    org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
    org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:885)
    org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1693)
    org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
    org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
    org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
    org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
    java.base/java.lang.Thread.run(Thread.java:829)

org.hibernate.exception.JDBCConnectionException: could not extract ResultSet

    org.hibernate.exception.internal.SQLExceptionTypeDelegate.convert(SQLExceptionTypeDelegate.java:48)
    org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:37)
    org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:113)
    org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:99)
    org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.extract(ResultSetReturnImpl.java:67)
    org.hibernate.loader.Loader.getResultSet(Loader.java:2322)
    org.hibernate.loader.Loader.executeQueryStatement(Loader.java:2075)
    org.hibernate.loader.Loader.executeQueryStatement(Loader.java:2037)
    org.hibernate.loader.Loader.doQuery(Loader.java:956)
    org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:357)
    org.hibernate.loader.Loader.doList(Loader.java:2868)
    org.hibernate.loader.Loader.doList(Loader.java:2850)
    org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2682)
    org.hibernate.loader.Loader.list(Loader.java:2677)
    org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:540)
    org.hibernate.hql.internal.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:400)
    org.hibernate.engine.query.spi.HQLQueryPlan.performList(HQLQueryPlan.java:219)
    org.hibernate.internal.SessionImpl.list(SessionImpl.java:1468)
    org.hibernate.query.internal.AbstractProducedQuery.doList(AbstractProducedQuery.java:1649)
    org.hibernate.query.internal.AbstractProducedQuery.list(AbstractProducedQuery.java:1617)
    se.smi.spectra.db.persistance.DatabaseHandler.getAllOrganisms(DatabaseHandler.java:312)
    se.smi.spectra.weblogic.actions.database.BrukerAction.execute(BrukerAction.java:30)
    jdk.internal.reflect.GeneratedMethodAccessor80.invoke(Unknown Source)
    java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    java.base/java.lang.reflect.Method.invoke(Method.java:566)
    ognl.OgnlRuntime.invokeMethodInsideSandbox(OgnlRuntime.java:1266)
    ognl.OgnlRuntime.invokeMethod(OgnlRuntime.java:1251)
    ognl.OgnlRuntime.callAppropriateMethod(OgnlRuntime.java:1969)
    ognl.ObjectMethodAccessor.callMethod(ObjectMethodAccessor.java:68)
    com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethodWithDebugInfo(XWorkMethodAccessor.java:98)
    com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethod(XWorkMethodAccessor.java:90)
    ognl.OgnlRuntime.callMethod(OgnlRuntime.java:2045)
    ognl.ASTMethod.getValueBody(ASTMethod.java:97)
    ognl.SimpleNode.evaluateGetValueBody(SimpleNode.java:212)
    ognl.SimpleNode.getValue(SimpleNode.java:258)
    ognl.Ognl.getValue(Ognl.java:537)
    ognl.Ognl.getValue(Ognl.java:501)
    com.opensymphony.xwork2.ognl.OgnlUtil$3.execute(OgnlUtil.java:492)
    com.opensymphony.xwork2.ognl.OgnlUtil.compileAndExecuteMethod(OgnlUtil.java:544)
    com.opensymphony.xwork2.ognl.OgnlUtil.callMethod(OgnlUtil.java:490)
    com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:438)
    com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:293)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:254)
    org.apache.struts2.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:250)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.DefaultWorkflowInterceptor.doIntercept(DefaultWorkflowInterceptor.java:179)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.validator.ValidationInterceptor.doIntercept(ValidationInterceptor.java:263)
    org.apache.struts2.interceptor.validation.AnnotationValidationInterceptor.doIntercept(AnnotationValidationInterceptor.java:49)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ConversionErrorInterceptor.doIntercept(ConversionErrorInterceptor.java:142)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:140)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:140)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:201)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.MultiselectInterceptor.intercept(MultiselectInterceptor.java:67)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.DateTextFieldInterceptor.intercept(DateTextFieldInterceptor.java:133)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.CheckboxInterceptor.intercept(CheckboxInterceptor.java:89)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:243)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ModelDrivenInterceptor.intercept(ModelDrivenInterceptor.java:101)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ScopedModelDrivenInterceptor.intercept(ScopedModelDrivenInterceptor.java:142)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ChainingInterceptor.intercept(ChainingInterceptor.java:160)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.PrepareInterceptor.doIntercept(PrepareInterceptor.java:175)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:121)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.ServletConfigInterceptor.intercept(ServletConfigInterceptor.java:167)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.AliasInterceptor.intercept(AliasInterceptor.java:228)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ExceptionMappingInterceptor.intercept(ExceptionMappingInterceptor.java:196)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.factory.StrutsActionProxy.execute(StrutsActionProxy.java:48)
    org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:574)
    org.apache.struts2.dispatcher.ExecuteOperations.executeAction(ExecuteOperations.java:79)
    org.apache.struts2.dispatcher.filter.StrutsPrepareAndExecuteFilter.doFilter(StrutsPrepareAndExecuteFilter.java:141)
    org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
    org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
    org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:197)
    org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
    org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:543)
    org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:135)
    org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
    org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:698)
    org.apache.catalina.valves.RemoteIpValve.invoke(RemoteIpValve.java:769)
    org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
    org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:367)
    org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:639)
    org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
    org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:885)
    org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1693)
    org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
    org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
    org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
    org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
    java.base/java.lang.Thread.run(Thread.java:829)

com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: WSREP has not yet prepared node for application use

    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
    com.mysql.jdbc.Util.handleNewInstance(Util.java:403)
    com.mysql.jdbc.Util.getInstance(Util.java:386)
    com.mysql.jdbc.SQLError.createSQLException(SQLError.java:919)
    com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3933)
    com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3869)
    com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2524)
    com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2675)
    com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2465)
    com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:1915)
    com.mysql.jdbc.PreparedStatement.executeQuery(PreparedStatement.java:2023)
    com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeQuery(NewProxyPreparedStatement.java:1471)
    org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.extract(ResultSetReturnImpl.java:57)
    org.hibernate.loader.Loader.getResultSet(Loader.java:2322)
    org.hibernate.loader.Loader.executeQueryStatement(Loader.java:2075)
    org.hibernate.loader.Loader.executeQueryStatement(Loader.java:2037)
    org.hibernate.loader.Loader.doQuery(Loader.java:956)
    org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:357)
    org.hibernate.loader.Loader.doList(Loader.java:2868)
    org.hibernate.loader.Loader.doList(Loader.java:2850)
    org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2682)
    org.hibernate.loader.Loader.list(Loader.java:2677)
    org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:540)
    org.hibernate.hql.internal.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:400)
    org.hibernate.engine.query.spi.HQLQueryPlan.performList(HQLQueryPlan.java:219)
    org.hibernate.internal.SessionImpl.list(SessionImpl.java:1468)
    org.hibernate.query.internal.AbstractProducedQuery.doList(AbstractProducedQuery.java:1649)
    org.hibernate.query.internal.AbstractProducedQuery.list(AbstractProducedQuery.java:1617)
    se.smi.spectra.db.persistance.DatabaseHandler.getAllOrganisms(DatabaseHandler.java:312)
    se.smi.spectra.weblogic.actions.database.BrukerAction.execute(BrukerAction.java:30)
    jdk.internal.reflect.GeneratedMethodAccessor80.invoke(Unknown Source)
    java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    java.base/java.lang.reflect.Method.invoke(Method.java:566)
    ognl.OgnlRuntime.invokeMethodInsideSandbox(OgnlRuntime.java:1266)
    ognl.OgnlRuntime.invokeMethod(OgnlRuntime.java:1251)
    ognl.OgnlRuntime.callAppropriateMethod(OgnlRuntime.java:1969)
    ognl.ObjectMethodAccessor.callMethod(ObjectMethodAccessor.java:68)
    com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethodWithDebugInfo(XWorkMethodAccessor.java:98)
    com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethod(XWorkMethodAccessor.java:90)
    ognl.OgnlRuntime.callMethod(OgnlRuntime.java:2045)
    ognl.ASTMethod.getValueBody(ASTMethod.java:97)
    ognl.SimpleNode.evaluateGetValueBody(SimpleNode.java:212)
    ognl.SimpleNode.getValue(SimpleNode.java:258)
    ognl.Ognl.getValue(Ognl.java:537)
    ognl.Ognl.getValue(Ognl.java:501)
    com.opensymphony.xwork2.ognl.OgnlUtil$3.execute(OgnlUtil.java:492)
    com.opensymphony.xwork2.ognl.OgnlUtil.compileAndExecuteMethod(OgnlUtil.java:544)
    com.opensymphony.xwork2.ognl.OgnlUtil.callMethod(OgnlUtil.java:490)
    com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:438)
    com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:293)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:254)
    org.apache.struts2.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:250)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.DefaultWorkflowInterceptor.doIntercept(DefaultWorkflowInterceptor.java:179)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.validator.ValidationInterceptor.doIntercept(ValidationInterceptor.java:263)
    org.apache.struts2.interceptor.validation.AnnotationValidationInterceptor.doIntercept(AnnotationValidationInterceptor.java:49)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ConversionErrorInterceptor.doIntercept(ConversionErrorInterceptor.java:142)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:140)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:140)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:201)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.MultiselectInterceptor.intercept(MultiselectInterceptor.java:67)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.DateTextFieldInterceptor.intercept(DateTextFieldInterceptor.java:133)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.CheckboxInterceptor.intercept(CheckboxInterceptor.java:89)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:243)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ModelDrivenInterceptor.intercept(ModelDrivenInterceptor.java:101)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ScopedModelDrivenInterceptor.intercept(ScopedModelDrivenInterceptor.java:142)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ChainingInterceptor.intercept(ChainingInterceptor.java:160)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.PrepareInterceptor.doIntercept(PrepareInterceptor.java:175)
    com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:99)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:121)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.interceptor.ServletConfigInterceptor.intercept(ServletConfigInterceptor.java:167)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.AliasInterceptor.intercept(AliasInterceptor.java:228)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    com.opensymphony.xwork2.interceptor.ExceptionMappingInterceptor.intercept(ExceptionMappingInterceptor.java:196)
    com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:249)
    org.apache.struts2.factory.StrutsActionProxy.execute(StrutsActionProxy.java:48)
    org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:574)
    org.apache.struts2.dispatcher.ExecuteOperations.executeAction(ExecuteOperations.java:79)
    org.apache.struts2.dispatcher.filter.StrutsPrepareAndExecuteFilter.doFilter(StrutsPrepareAndExecuteFilter.java:141)
    org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
    org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
    org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:197)
    org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
    org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:543)
    org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:135)
    org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
    org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:698)
    org.apache.catalina.valves.RemoteIpValve.invoke(RemoteIpValve.java:769)
    org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
    org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:367)
    org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:639)
    org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
    org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:885)
    org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1693)
    org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
    org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
    org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
    org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
    java.base/java.lang.Thread.run(Thread.java:829)

Messages:	WSREP has not yet prepared node for application use could not extract ResultSet org.hibernate.exception.JDBCConnectionException: could not extract ResultSet
File:	org/hibernate/exception/internal/SQLExceptionTypeDelegate.java
Line number:	48