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Organism Clinical feature Classification Likely found in BSL Present in Biotyper library Biotyper MSPs New MSPs Comments
null null null No null
Abiotrophia defectiva Infective endocarditis Gram+, anaerobic, Lactic acid bacteria, Cocci Mouth, urogenital and intestinal tract 2 Yes 42_A241 MHH, DSM 9849T DSM, SR002 IBS
Acetobacter aceti Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 Yes B212 UFL, B213 UFL
Acetobacter aceti ssp aceti Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter cerevisiae Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter cibinongensis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter estunensis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter fabarum Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter farinalis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter ghanensis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter indonesiensis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter liquefaciens Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter lovaniensis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter malorum Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter nitrogenifigens Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter oeni Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter orientalis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter orleanensis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter pasteurianus Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 Yes B208 UFL, B219 UFL, B220 UFL, B546 UFL
Acetobacter pasteurianus ssp ascendens Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter pasteurianus ssp paradoxus Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter pasteurianus ssp pasteurianus Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 Yes B210 UFL,B214 UFL
Acetobacter peroxydans Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter pomorum Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter senegalensis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter syzygii Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acetobacter tropicalis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Acholeplasma axanthum Pathogen of farm animals Aerobic, Wall less bacteria, Gram- Plants, environmental samples 2 No
Acholeplasma brassicae Aerobic, Wall less bacteria, Gram- Plants 1 No
Acholeplasma cavigenitalium Aerobic, Wall less bacteria, Gram- Genital tract of rodents 1 No
Acholeplasma equifetale Aerobic, Wall less bacteria, Gram- Horse fetuses 2 No
Acholeplasma granularum Commensal in swine Aerobic, Wall less bacteria, Gram- 1 No
Acholeplasma hippikon Aerobic, Wall less bacteria, Gram- Horse fetuses 2 No
Acholeplasma laidlawii Contaminant in cell culture media Aerobic, Wall less bacteria, Gram- environment 1 Yes FLR
Acholeplasma modicum Aerobic, Wall less bacteria, Gram- Lung of cattle 2 No
Acholeplasma morum Aerobic, Wall less bacteria, Gram- Fetal calf serum 2 No
Acholeplasma multilocale Aerobic, Wall less bacteria, Gram- Nasopharynx of horse 2 No
Acholeplasma oculi Conjunctivitis in farm animals Aerobic, Wall less bacteria, Gram- eye swab 2 No
Acholeplasma palmae Aerobic, Wall less bacteria, Gram- plants 2 No
Acholeplasma parvum Aerobic, Wall less bacteria, Gram- Oral cavity of horse 2 No
Acholeplasma pleciae Aerobic, Wall less bacteria, Gram- Insects 1 No
Acholeplasma vituli Aerobic, Wall less bacteria, Gram- Fetal calf serum 1 No
Achromobacter denitrificans Strictly aerobic Gram- rods soil samples 1 Yes DSM 11850 DSM, DSM 30026T DSM, DSM 4612 DSM,
Achromobacter insolitus Strictly aerobic Gram- rods Clinical samples 1 Yes LMG 6003T HAM
Achromobacter marplatensis Strictly aerobic Gram- rods Clinical samples 1 No
Achromobacter piechaudii Strictly aerobic Gram- rods Pharyngeal swab, soil samples 1 Yes DSM 10342T DSM, DSM 11386 DSM
Achromobacter ruhlandii Strictly aerobic Gram- rods Soil samples 1 Yes DSM 653T DSM
Achromobacter sp Strictly aerobic Gram- rods Yes DSM 30128 DSM, AL908830_BK14941 UKH
Achromobacter spanius Strictly aerobic Gram- rods Clinical samples 1 Yes 075_W08 NFI, LMG 5911T HAM
Achromobacter xylosoxidans Strictly aerobic Gram- rods Ear swab, soil samples 1 Yes 40 PIM, MU_15202_1 CHB
Achromobacter xylosoxidans ssp xylosoxidans Strictly aerobic Gram- rods Ear swab, soil samples 1 Yes DSM 11852 DSM, DSM 2402T DSM,DSM 6388 DSM
Acidaminococcus fermentans Anaerobic diplococci Gram- Cervical swab, animal intestines 2 Yes DSM 20731T DSM
Acidaminococcus intestini Anaerobic diplococci Gram- Animal intestines, peritoneal fluid 2 Yes 07_136 N3 IBS, DSM 21505T DSM
Acidiphilium acidophilum Gram-, aerobic Acidic coal mine drainage 1 Yes B349 UFL
Acidiphilium angustum Gram-, aerobic Acidic coal mine drainage 1 No
Acidiphilium cryptum Gram-, aerobic Acidic coal mine drainage 1 No
Acidiphilium multivorum Gram-, aerobic Acidic coal mine drainage 1 No
Acidiphilium organovorum Gram-, aerobic Acidic coal mine drainage 1 No
Acidiphilium rubrum Gram-, aerobic Acidic coal mine drainage 1 No
Acidovorax anthurii Bacterial leaf-spot of anthurium Gram-, aerobic Plants, soil 1 No
Acidovorax avenae Bacterial fruit blotch of cucurbitaceae Gram-, aerobic Soil 1 No
Acidovorax avenae ssp avenae Bacterial fruit blotch of cucurbitaceae Gram-, aerobic Soil 1 Yes DSM 7227T HAM
Acidovorax caeni Gram-, aerobic Soil 1 No
Acidovorax cattleyae Bacterial leaf-spot of orchids Gram-, aerobic Plants 1 No
Acidovorax citrulli Bacterial fruit blotch of cucurbitaceae Gram-, aerobic Soil, plants 1 Yes LMG 5376T HAM
Acidovorax defluvii Gram-, aerobic Soil 1 Yes DSM 12644T HAM
Acidovorax delafieldii Gram-, aerobic Soil 1 Yes DSM 64T HAM
Acidovorax facilis Gram-, aerobic 1 Yes B530 UFL, DSM 649T HAM
Acidovorax konjaci Gram-, aerobic Soil 1 Yes DSM 7481T HAM
Acidovorax oryzae Gram-, aerobic Soil, rice 1 No
Acidovorax radicis Gram-, aerobic soil 1 No
Acidovorax soli Gram-, aerobic soil 1 No
Acidovorax temperans Gram-, aerobic soil, Urine 1 Yes 3_2 TUB, DSM 7270T HAM
Acidovorax valerianellae Pathogen of lamb's lettuce Gram-, aerobic Plants 1 No
Acinetobacter baumannii wound infections, necrotizing fasciitis, bacterimia, pneumonia Gram-, Strictly aerobic, nonfermentative, bacilli Soil, Urine, blood, wound swabs, mucosal surfaces 2 Yes 13101_1 CHB, B389 UFL, CS 62_1 BRB, DSM 30007T HAM, DSM 30008 DSM, DSM 30011 DSM, LMG 994 HAM, ECI RUH_875 HCB, ECII RUH_134 HCB, ECIII RUH_5875 HCB, GEIH_2000 HCB
Acinetobacter baylyi Gram-, Strictly aerobic, nonfermentative, bacilli 1 Yes DSM 14959 DSM, DSM 14961T DSM, DSM 14963 DSM
Acinetobacter beijerinckii Gram-, Strictly aerobic, nonfermentative, bacilli 1 No
Acinetobacter bereziniae Gram-, Strictly aerobic, nonfermentative, bacilli 1 No
Acinetobacter bouvetii Gram-, Strictly aerobic, nonfermentative, bacilli 1 Yes DSM 14964T DSM
Acinetobacter brisouii Gram-, Strictly aerobic, nonfermentative, bacilli 1 No
Acinetobacter calcoaceticus Gram-, Strictly aerobic, nonfermentative, bacilli Skin and throat normal flora 1 Yes 28 PIM, B388 UFL, CCM 4503 CCM, CCM 4665 CCM, DSM 1139 DSM, DSM 30006T HAM
Acinetobacter gerneri Gram-, Strictly aerobic, nonfermentative, bacilli 1 Yes DSM 14967T HAM
Acinetobacter guillouiae Gram-, Strictly aerobic, nonfermentative, bacilli Yes DSM 590 DSM
Acinetobacter gyllenbergii Gram-, Strictly aerobic, nonfermentative, bacilli No
Acinetobacter haemolyticus rarely a human pathogen Gram-, Strictly aerobic, nonfermentative, bacilli Sputum 2 Yes DSM 6962T DSM, LMG 1033 HAM SMI A058 SMI
Acinetobacter johnsonii Gram-, Strictly aerobic, nonfermentative, bacilli 2 Yes 10036669_102 USH, 2_1 TUB, 31 PIM, DSM 6963T DSM, DSM 6963T HAM, v773MCRF
Acinetobacter junii rarely a human pathogen Gram-, Strictly aerobic, nonfermentative, bacilli Urine 2 Yes DSM 6964T HAM, DSM 1532 DSM, DSM 14968 HAM
Acinetobacter lwoffii meningitis Gram-, Strictly aerobic, nonfermentative, bacilli Lungs and pharynx 2 Yes LB_101249_09 ERL, 13 PIM, 2_Ring240 MHH, 54 PIM, B101 UFL, B138 UFL, DSM 2403T DSM, 11_0038419_001_01 LGL, V506 MCRF
Acinetobacter nosocomialis Gram-, Strictly aerobic, nonfermentative, bacilli 1 Yes AL_192 HCB, AL_212 HCB, AL_59 HCB, AL_73 HCB, AL_95 HCB
Acinetobacter parvus Otitis Gram-, Strictly aerobic, nonfermentative, bacilli ear 2 Yes DSM 16617T HAM
Acinetobacter pitii Gram-, Strictly aerobic, nonfermentative, bacilli 1 Yes Serovar 1 DSM 9337 DSM, Serovar 13 DSM 9312 DSM, Serovar 18 DSM 9341 DSM, Serovar 2 DSM 9306 DSM, Serovar 21 DSM 9342 DSM, Serovar 22 DSM 9318 DSM, Serovar 24 DSM 9320 DSM, Serovar 25 DSM 9343 DSM, Serovar 26 DSM 9321 DSM, Serovar 3 DSM 9307 DSM, Serovar 4 DSM 9338 DSM, Serovar 7 DSM 9308 DSM, 14 HCB, 20 HCB, 21 HCB, 52 HCB, 60 HCB, 69 HCB
Acinetobacter radioresistens rarely a human pathogen Gram-, Strictly aerobic, nonfermentative, bacilli Soil 1 Yes LMG 10614 HAM, DSM 6976T HAM, B381 UFL
Acinetobacter rudis Gram-, Strictly aerobic, nonfermentative, bacilli 1 No
Acinetobacter schindleri rarely a human pathogen Gram- coccobacilli, Strictly aerobic, nonfermentative, bacilli 2 Yes DSM 16038T DSM
Acinetobacter soli Gram-, Strictly aerobic, nonfermentative, bacilli Soil 1 No
Acinetobacter sp Gram-, Strictly aerobic, nonfermentative, bacilli Yes DSM 46612 DSM, DSM 11042 DSM, DSM 11652 DSM, DSM 30009 DSM
Acinetobacter tandoii Gram-, Strictly aerobic, nonfermentative, bacilli 1 Yes DSM 14970T HAM
Acinetobacter tjernbergiae Gram-, Strictly aerobic, nonfermentative, bacilli 1 Yes DSM 14971T HAM, DSM 14966 DSM
Acinetobacter towneri Gram-, Strictly aerobic, nonfermentative, bacilli 1 Yes DSM 14969 DSM, DSM 14962T HAM
Acinetobacter ursingii endocarditis Gram-, Strictly aerobic, nonfermentative, bacilli Opportunistic infects seriously ill patients 2 Yes 477 RLT, DSM 16037T HAM
Acinetobacter venetianus Gram-, Strictly aerobic, nonfermentative, bacilli Seawater 1 No
Actinobacillus anseriformium Gram- oval to rod shaped, facultatively aerobic or anaerobic 2 No
Actinobacillus arthritidis Arthrithis in animals Gram- oval to rod shaped, facultatively aerobic or anaerobic horse joint 2 No
Actinobacillus capsulatus Gram- oval to rod shaped, facultatively aerobic or anaerobic rabbit pharinx 2 No
Actinobacillus delphinicola Gram- oval to rod shaped, facultatively aerobic or anaerobic dolphin lung 2 Yes DSM 11374T DSM
Actinobacillus equuli Septicemia in horses Gram- oval to rod shaped, facultatively aerobic or anaerobic Horse blood 2 No
Actinobacillus equuli ssp equuli Gram- oval to rod shaped, facultatively aerobic or anaerobic 2 Yes DSM 19655T DSM
Actinobacillus equuli ssp haemolyticus Gram- oval to rod shaped, facultatively aerobic or anaerobic 2 No
Actinobacillus hominis Gram- oval to rod shaped, facultatively aerobic or anaerobic 2 No
Actinobacillus indolicus Gram- oval to rod shaped, facultatively aerobic or anaerobic 2 No
Actinobacillus lignieresii Gram- oval to rod shaped, facultatively aerobic or anaerobic animal tissue 2 Yes DSM 19770 DSM
Actinobacillus minor Gram- oval to rod shaped, facultatively aerobic or anaerobic 2 No
Actinobacillus muris pneumonia in mice Gram- oval to rod shaped, facultatively aerobic or anaerobic mouse pharinx 2 No
Actinobacillus pleuropneumoniae pneumonia in animals Gram- oval to rod shaped, facultatively aerobic or anaerobic animal lungs 2 Yes 351 LAL, DSM 13472T DSM
Actinobacillus porcinus Gram- oval to rod shaped, facultatively aerobic or anaerobic 2 No
Actinobacillus rossii Gram- oval to rod shaped, facultatively aerobic or anaerobic sow urogenital tract 2 Yes DSM 17479T DSM
Actinobacillus scotiae Gram- oval to rod shaped, facultatively aerobic or anaerobic 2 No
Actinobacillus seminis Gram- oval to rod shaped, facultatively aerobic or anaerobic Animal semen 2 No
Actinobacillus succinogenes Gram- oval to rod shaped, facultatively aerobic or anaerobic rumen of cattle 1 No
Actinobacillus suis Gram- oval to rod shaped, facultatively aerobic or anaerobic animal blood 2 Yes DSM 19774 DSM, GD75 GDD
Actinobacillus ureae Gram- oval to rod shaped, facultatively aerobic or anaerobic nose swab 2 Yes DSM 5568T DSM
Actinobaculum massiliense Gram+ facultative anaerobic coccoid rod 1 No
Actinobaculum schaalii Urosepsis Gram+ facultative anaerobic coccoid rod 2 Yes DSM 15541T DSM, RV_BA1_032010_E LBK, 70710715001 MVC
Actinobaculum suis Actinomycosis of the swine mammary gland Gram+ facultative anaerobic coccoid rod Swine 2 Yes DSM 20639T DSM
Actinobaculum urinale Urosepsis Gram+ facultative anaerobic coccoid rod urine 2 Yes DSM 15805T DSM
Actinocorallia aurantiaca Gram+ Soil 1 No
Actinocorallia aurea Gram+ Soil 1 No
Actinocorallia cavernae Gram+ Soil 1 No
Actinocorallia glomerata Gram+ Soil 1 No
Actinocorallia herbida Gram+ Soil 1 No
Actinocorallia libanotica Gram+ Soil 1 Yes B246 UFL
Actinocorallia longicatena Gram+ Soil 1 No
Actinomyces bovis Actinomycosis in cattle and sheep Anaerobe Gram+ rods (clusters form "hyphae-like" structures) 2 Yes DSM 43014T DSM
Actinomyces bowdenii Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 15435T DSM
Actinomyces canis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 15536T DSM
Actinomyces cardiffensis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 15803T DSM
Actinomyces catuli Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 15415T DSM
Actinomyces coleocanis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 15436T DSM
Actinomyces dentalis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) mouth 2 Yes DSM 19115T DSM
Actinomyces denticolens Anaerobe Gram+ rods (clusters form "hyphae-like" structures) Mouth 2 Yes DSM 20671T DSM
Actinomyces europaeus Anaerobe Gram+ rods (clusters form "hyphae-like" structures) human tissue samples 1 Yes DSM 11078 DSM, DSM 11077 DSM, DSM 11076 DSM
Actinomyces funkei Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 15537T DSM
Actinomyces georgiae Anaerobe Gram+ rods (clusters form "hyphae-like" structures) mouth 2 No
Actinomyces gerencseriae Anaerobe Gram+ rods (clusters form "hyphae-like" structures) Parotid abscess 2 Yes DSM 6844T DSM
Actinomyces graevenitzii Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 15540T DSM, P9flue_1_7_1aer USH, P4bue_re2AN USH
Actinomyces hominis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) 2 No
Actinomyces hongkongensis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) 2 No
Actinomyces hordeovulneris Abscess, pleuritis and systemic infections in dogs Anaerobe Gram+ rods (clusters form "hyphae-like" structures) canine ascites fluid 2 Yes DSM 20732T DSM
Actinomyces howellii Anaerobe Gram+ rods (clusters form "hyphae-like" structures) 2 No
Actinomyces humiferus Anaerobe Gram+ rods (clusters form "hyphae-like" structures) soil 2 No
Actinomyces hyovaginalis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) swine urogenital tract 2 Yes DSM 10695T DSM
Actinomyces israelii Actinomycosis, rarely becterial endocarditis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) Urine and feces samples, mouth samples mucosal surfaces of vagina and rectum, soil samples, decaying organic matter 2 Yes DSM 43323 DSM,DSM 43320T DSM, DSM 43011 DSM
Actinomyces johnsonii null Anaerobe Gram+ rods (clusters form "hyphae-like" structures) mouth 2 No
Actinomyces marimammalium Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 15383T DSM
Actinomyces massiliensis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 No
Actinomyces meyeri Anaerobe Gram+ rods (clusters form "hyphae-like" structures) Infected wounds 2 Yes VA390_10 ERL, IBS_MS_5 IBS, DSM 20733T DSM, 61356 PNU, P10flue_li3AN USH
Actinomyces naeslundii Caries and periodontal disease Anaerobe Gram+ rods (clusters form "hyphae-like" structures) Mouth samples, female genital tract 2 Yes DSM 43013T DSM, DSM 17233 DSM
Actinomyces nasicola Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 19116T DSM
Actinomyces naturae null Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes VA201_10 ERL
Actinomyces neuii Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes 50_90 IBS, B17945_03 IBS, 461 RLT, 475 RLT
Actinomyces neuii ssp anitratus null Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes 121 RLT, DSM 8577T DSM
Actinomyces neuii ssp neuii Anaerobe Gram+ rods (clusters form "hyphae-like" structures) 2 Yes DSM 8576T DSM, 471 RLT
Actinomyces odontolyticus Caries and periodontal disease Anaerobe Gram+ rods (clusters form "hyphae-like" structures) Mouth samples 2 Yes 87 PIM, DSM 43331 DSM, DSM 19120T DSM, 100617_01 PNU, 110324_101 PNU, 110324_25 PNU, 110706_K6 LUMC, 1A12041127_4e MVD, 1A12072410_3e MVD, 473 RLT, P10bue_li1aer USH, P3flue_li10AN USH, P9bue_1_7_7aer USH, 100617_49 PNU 2
Actinomyces oricola Anaerobe Gram+ rods (clusters form "hyphae-like" structures) 2 No
Actinomyces oris Anaerobe Gram+ rods (clusters form "hyphae-like" structures) Sputum 2 Yes 1A12082242_1e MVD, BK03176_10 ERL, Cory_54 IBS, Cory_83 IBS, Cory_84 IBS, P5flue35_3aer USH, P5flue35_4aer USH, P5flue35_5aer USH, BK495_10 ERL
Actinomyces radicidentis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 15433T DSM
Actinomyces radingae Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 9169T DSM, 202 RLT, 343 RTL
Actinomyces ruminicola Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes CIP 109388T CIP
Actinomyces slackii Anaerobe Gram+ rods (clusters form "hyphae-like" structures) mouth 2 No
Actinomyces sp Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes VA_01434_2_09 ERL, G4892 IBS, UGV 2298 UGV, UGV 4321 UGV
Actinomyces suimastitidis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM 15538T DSM
Actinomyces timonensis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) 2 No
Actinomyces turicensis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) feces, perianal abscess 2 Yes DSM 9168T DSM, 23346_1a HDI
Actinomyces urogenitalis Anaerobe Gram+ rods (clusters form "hyphae-like" structures) Urine, urethra, vaginal secretion 2 Yes VA00144_08 ERL, DSM 15434T DSM
Actinomyces vaccimaxillae Anaerobe Gram+ rods (clusters form "hyphae-like" structures) null 2 Yes DSM15804T DSM
Actinomyces viscosus Peridontal disease in hamsters and opportunistic infections in dogs Anaerobe Gram+ rods (clusters form "hyphae-like" structures) 2 Yes DSM 43327T DSM
Adlercreutzia equolifaciens Obligate anaerobe, non-spore forming, non-motile, Gram+ coccobacilli Feces 1 Yes DSM 19450T DSM
Aerococcus christensenii Gram+ cocci aerobic air, skin, urgogenital tract 2 Yes DSM 15819T DSM
Aerococcus sanguinicola bacteremia and septicemia Gram+ cocci aerobic air, skin, blood 2 Yes 995100567 LBK, DSM 15633T DSM, UR_01084b_09 ERL
Aerococcus suis Gram+ cocci aerobic air, swine samples 1 No
Aerococcus urinae Urinary tract infections Gram+ cocci aerobic air, Urine 2 Yes 0424_0481_FEB IBS, 3_Typ528 MHH, IBS_MS_14 IBS, DSM 7446T DSM, 992000245 LBK, 81 PIM, UR4955_09 ERL
Aerococcus urinaeequi Gram+ cocci aerobic air,Horse urine 1 No
Aerococcus urinaehominis Gram+ cocci aerobic air, Urine 2 Yes DSM 15634T DSM
Aerococcus viridans Septicemia in lobster Gram+ cocci aerobic air, lobster 1 Yes CCM 1911 CCM, CCM 1914T CCM, CCM 1915 CCM, CCM 2439 CCM, DSM 20311 DSM, DSM 20340T DSM
Aeromicrobium alkaliterrae Gram+ No
Aeromicrobium erythreum Gram+ No
Aeromicrobium fastidiosum Gram+ No
Aeromicrobium flavum Gram+ Yes DSM 19355T DSM
Aeromicrobium ginsengisoli Gram+ No
Aeromicrobium halocynthiae Gram+ No
Aeromicrobium marinum Gram+ No
Aeromicrobium massiliense Gram+ No
Aeromicrobium panaciterrae Gram+ No
Aeromicrobium ponti Gram+ No
Aeromicrobium tamlense Gram+ No
Aeromonas allosaccharophila Gram- facultative anaerobic, rod shaped feces 2 No
Aeromonas aquariorum Gram- facultative anaerobic, rod shaped water 1 No
Aeromonas bestiarum Septicemia in fish Gram- facultative anaerobic, rod shaped fish, food, eggs 1 Yes CECT 4227T DSM, DSM 13956T HAM
Aeromonas bivalvium Gram- facultative anaerobic, rod shaped water 1 No
Aeromonas caviae Diarrhea Gram- facultative anaerobic, rod shaped water 1 Yes 60 PIM, CECT 838T DSM, DSM 7323T HAM Synonym A. puncata ssp caviae
Aeromonas diversa Gram- facultative anaerobic, rod shaped Wound 2 No
Aeromonas encheleia Gram- facultative anaerobic, rod shaped eel 1 Yes CECT 4342T DSM, DSM 11577T HAM
Aeromonas enteropelogenes Gram- facultative anaerobic, rod shaped feces, appendix 1 Yes DSM 6394T DSM, DSM 7312 DSM, DSM 9381 DSM
Aeromonas eucrenophila Gram- facultative anaerobic, rod shaped Water, fish 1 Yes DSM 17534T HAM, CECT 4224T DSM
Aeromonas fluvialis Gram- facultative anaerobic, rod shaped Water 1 No
Aeromonas hydrophila Gram- facultative anaerobic, rod shaped fish, food, eggs 2 Yes CECT 839T DSM
Aeromonas hydrophila ssp anaerogenes Gram- facultative anaerobic, rod shaped fish, food, eggs 2 Yes DSM 30188T HAM
Aeromonas hydrophila ssp dhakensis Gram- facultative anaerobic, rod shaped fish, food, eggs 2 No
Aeromonas hydrophila ssp hydrophila Gram- facultative anaerobic, rod shaped fish, food, eggs 2 Yes DSM 30187T DSM
Aeromonas hydrophila ssp ranae Gram- facultative anaerobic, rod shaped fish, food, eggs 2 Yes LMG 19707T HAM
Aeromonas ichthiosmia Gram- facultative anaerobic, rod shaped insect larvae 2 Yes DSM 6393T HAM
Aeromonas jandaei Gastroenteritis wound and eye infetions Gram- facultative anaerobic, rod shaped feces, blood, eyes, wounds, shellfish 1 Yes CECT 4228T DSM, DSM 7311T HAM
Aeromonas media Gram- facultative anaerobic, rod shaped fish, water 1 Yes ST_00655_09 ERL, CECT 4232T DSM, DSM 4881T HAM, ST_02485_08 ERL
Aeromonas molluscorum Gram- facultative anaerobic, rod shaped Shellfish 1 Yes DSM 17090T HAM, 848T DSM
Aeromonas piscicola Gram- facultative anaerobic, rod shaped fish 1 No
Aeromonas popoffii urinary tract infections Gram- facultative anaerobic, rod shaped Urogenital tract, urine 1 Yes LMG 17541T HAM
Aeromonas punctata gastroenteritis Gram- facultative anaerobic, rod shaped water 2 No
Aeromonas punctata ssp caviae gastroenteritis Gram- facultative anaerobic, rod shaped water 2 Yes LMG 3773 HAM
Aeromonas punctata ssp punctata gastroenteritis Gram- facultative anaerobic, rod shaped water 2 No
Aeromonas rivuli Gram- facultative anaerobic, rod shaped water 1 No
Aeromonas salmonicida Gram- facultative anaerobic, rod shaped fish, trout 1 No
Aeromonas salmonicida ssp achromogenes Gram- facultative anaerobic, rod shaped fish, trout 1 No
Aeromonas salmonicida ssp masoucida Gram- facultative anaerobic, rod shaped fish, trout 1 Yes LMG 3782T HAM
Aeromonas salmonicida ssp pectinolytica Gram- facultative anaerobic, rod shaped fish, trout 1 Yes DSM 12609T HAM
Aeromonas salmonicida ssp salmonicida Gram- facultative anaerobic, rod shaped fish, trout 1 Yes CCM 1307 CCM, CECT 894T DSM, LMG 3780T HAM
Aeromonas salmonicida ssp smithia Gram- facultative anaerobic, rod shaped fish, trout 1 No
Aeromonas sanerellii Gram- facultative anaerobic, rod shaped wounds 2 No
Aeromonas schubertii Gram- facultative anaerobic, rod shaped skin, abscess 1 Yes CECT 4240T DSM, DSM 4882T HAM
Aeromonas sharmana Gram- facultative anaerobic, rod shaped 1 No
Aeromonas simiae Gram- facultative anaerobic, rod shaped 1 Yes DSM 16559T HAM
Aeromonas sobria Gram- facultative anaerobic, rod shaped sludge 1 Yes CECT 4245T DSM, LMG 3783T HAM
Aeromonas sp[2] Gram- facultative anaerobic, rod shaped Yes VA_12051_09 ERL
Aeromonas taiwanensis Gram- facultative anaerobic, rod shaped wounds 2 No
Aeromonas tecta Gram- facultative anaerobic, rod shaped water 1 No
Aeromonas veronii Wound Infection, bacteremia, septicemia, diarreha Gram- facultative anaerobic, rod shaped wounds, blood, feces, sputum 2 Yes 0807M090438 IBS, CECT 4199T DSM, CECT 4257T DSM, CECT 5761T DSM, DSM 11576T HAM, DSM 17676 HAM, DSM 7386T HAM
Afipia broomeae Gram- bacilli Yes DSM 7327T DSM
Afipia felis Gram- bacilli Yes DSM 16694 DSM, DSM 7326T DSM
Afipia massiliensis Gram- bacilli Yes DSM 17498T DSM
Aggregatibacter actinomycetemcomitans Caries and periodontal disease Gram-, facultative non-motile rods throat, mouth 2 Yes CCM 4688T CCM, CCM 6053 CCM, DSM 11122 DSM, DSM 11123 DSM, DSM 8324T DSM
Aggregatibacter aphrophilus endocarditis Gram-, facultative non-motile rods blood, mucosal surfaces 2 Yes 100409_01 MCU, 100409_02 MCU,RV BRL
Aggregatibacter segnis Caries and periodontal disease Gram-, facultative non-motile rods mouth 2 Yes DSM 21418T DSM, VA13748_09 ERL
Agrococcus baldri Aerobic, Gram+, coryneform Soil, environment 1 No
Agrococcus carbonis Aerobic, Gram+, coryneform Soil, environment 1 No
Agrococcus casei Aerobic, Gram+, coryneform Soil, environment, cheese 1 No
Agrococcus citreus Aerobic, Gram+, coryneform Soil, environment 1 No
Agrococcus jejuensis Aerobic, Gram+, coryneform Soil, environment 1 No
Agrococcus jenensis Aerobic, Gram+, coryneform Soil, environment 1 Yes DSM 9580T DSM, DSM 9996 DSM
Agrococcus lahaulensis Aerobic, Gram+, coryneform Soil, environment 1 No
Agrococcus terreus Aerobic, Gram+, coryneform Soil, environment 1 No
Agrococcus versicolor Aerobic, Gram+, coryneform Soil, environment 1 No
Agromyces albus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces allii Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces atrinae Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces aurantiacus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces bauzanensis Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces bracchium Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 303 DSM 14596T HKJ
Agromyces cerinus ssp cerinus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 11525_DSM 8595T HKJ
Agromyces cerinus ssp nitratus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 11532_DSM 8596T HKJ
Agromyces flavus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces fucosus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 11529_DSM 8597T HKJ
Agromyces hippuratus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 11533_DSM 8598T HKJ
Agromyces humatus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 327 HKJ
Agromyces italicus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 325_DSM 16388T HKJ
Agromyces lapidis Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 324 HKJ
Agromyces luteolus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces mediolanus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes DSM 20152T DSM, HKI 108_DSM 20152T HKJ, HKI 308 HKJ
Agromyces neolithicus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 321 HKJ
Agromyces ramosus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces rhizospherae Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 302_DSM 14597T HKJ
Agromyces salentinus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 320_DSM 16198T HKJ
Agromyces soli Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces subbeticus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 Yes HKI 340_DSM 16689T HKJ
Agromyces terrus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces tropicus Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Agromyces ulmi Aerobic, Gram+, coccoid to irregular cells Soil, environment 1 No
Alcaligenes aquatilis Gram-, obligate aerobic, rod shaped, motile water 1 No
Alcaligenes faecalis Opportunistic urinary tract infections Gram-, obligate aerobic, rod shaped, motile feces, urine 1 Yes DSM 13644 DSM
Alcaligenes faecalis ssp faecalis Opportunistic urinary tract infections Gram-, obligate aerobic, rod shaped, motile feces, urine 1 Yes 052_NF24 NFI, DSM 2576 DSM, DSM 30030T DSM, DSM 30030T HAM, DSM 30033 DSM, DSM 6174 DSM
Alcaligenes faecalis ssp parafaecalis Opportunistic urinary tract infections Gram-, obligate aerobic, rod shaped, motile feces, urine 1 Yes DSM 13975T DSM, DSM 13975T HAM
Alcaligenes faecalis ssp phenolicus Opportunistic urinary tract infections Gram-, obligate aerobic, rod shaped, motile feces, urine 1 Yes DSM 16503T DSM
Alcaligenes sp Gram-, obligate aerobic, rod shaped, motile 1 Yes 091029_c SLT
Alicyclobacillus acidiphilus Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 14558T DSM
Alicyclobacillus acidocaldarius Gram+, rods, spore forming, frow in acidic conditions. Soil 1 No
Alicyclobacillus acidocaldarius ssp acidocaldarius Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 452 DSM, DSM 446T DSM
Alicyclobacillus acidocaldarius ssp rittmannii Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 11297T DSM
Alicyclobacillus acidoterrestris Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 2498 DSM, DSM 3924 DSM, DSM 3922T DSM
Alicyclobacillus aeris Gram+, rods, spore forming, frow in acidic conditions. Soil 1 No
Alicyclobacillus consociatus Gram+, rods, spore forming, frow in acidic conditions. Soil 1 No
Alicyclobacillus contaminans Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 17975T DSM
Alicyclobacillus cycloheptanicus Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 4005DSM, DSM 4006T DSM, DSM 4007 DSM
Alicyclobacillus disulfidooxidans Gram+, rods, spore forming, frow in acidic conditions. Soil 1 No
Alicyclobacillus fastidiosus Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 17978T DSM
Alicyclobacillus ferrooxydans Gram+, rods, spore forming, frow in acidic conditions. Soil 1 No
Alicyclobacillus herbarius Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 13609T DSM
Alicyclobacillus hesperidum Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 12489T DSM, DSM 12766 DSM
Alicyclobacillus kakegawensis Gram+, rods, spore forming, frow in acidic conditions. Soil 1 No
Alicyclobacillus macrosporangiidus Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 17980T DSM
Alicyclobacillus pohliae Gram+, rods, spore forming, frow in acidic conditions. Soil 1 No
Alicyclobacillus pomorum Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 14955T DSM
Alicyclobacillus sacchari Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 17974T DSM
Alicyclobacillus sendaiensis Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 17614T DSM
Alicyclobacillus shizuokensis Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 17981T DSM
Alicyclobacillus tolerans Gram+, rods, spore forming, frow in acidic conditions. Soil 1 No
Alicyclobacillus vulcanalis Gram+, rods, spore forming, frow in acidic conditions. Soil 1 Yes DSM 16176T DSM
Aliivibrio finisterrensis Gram-, rod shaped, motile clams 1 No
Aliivibrio fischeri Gram-, rod shaped, motile Water, fish 1 Yes DSM 2168 DSM, DSM 507T DSM, DSM 7151 DSM
Aliivibrio logei Gram-, rod shaped, motile Water, fish 1 No
Aliivibrio salmonicida Fish pathogen Gram-, rod shaped, motile fish 1 No
Aliivibrio sifiae Gram-, rod shaped, motile Water, fish 1 No
Aliivibrio wodanis Gram-, rod shaped, motile Water, fish 1 No
Alishewanella aestuarii Gram-, round cells, motile, catalase and oxidase positive water 1 No
Alishewanella agri Gram-, round cells, motile, catalase and oxidase positive Soil 1 No
Alishewanella fetalis Gram-, round cells, motile, catalase and oxidase positive Soil, human fetus 1 Yes DSM 16032T HAM
Alishewanella jeotgali Gram-, round cells, motile, catalase and oxidase positive Soil 1 No
Alistipes finegoldii Gram-, strictly anaerobic, pigment producing rod shaped human tissue samples 2 Yes DSM 17242T DSM
Alistipes indistinctus Gram-, strictly anaerobic, pigment producing rod shaped human tissue samples 2 No
Alistipes onderdonkii Gram-, strictly anaerobic, pigment producing rod shaped human tissue samples 2 Yes 18 RLT, DSM 19147T DSM
Alistipes putrdinis Gram-, strictly anaerobic, pigment producing rod shaped human tissue samples 2 No
Alistipes shahii Gram-, strictly anaerobic, pigment producing rod shaped human tissue samples 2 Yes DSM 19121T DSM
Alkalibacillus filiformis Gram+ strictly aerobic, spore bearing rod shaped soil 1 No
Alkalibacillus flavidus Gram+ strictly aerobic, spore bearing rod shaped soil 1 No
Alkalibacillus haloalkaliphilus Gram+ strictly aerobic, spore bearing rod shaped soil 1 Yes DSM 5271T DSM
Alkalibacillus halophilus Gram+ strictly aerobic, spore bearing rod shaped soil 1 No
Alkalibacillus salilacus Gram+ strictly aerobic, spore bearing rod shaped water, soil 1 No
Alkalibacillus silvisoli Gram+ strictly aerobic, spore bearing rod shaped soil 1 No
Alkalibacillus weihaiensis Gram+ strictly aerobic, spore bearing rod shaped Soil 1 No
Alloiococcus otitis Acute otitis media Gram+, aerobic, clustered ear swab of humans and animals 2 Yes DSM 7252T DSM, POS 3007 BDU, POS 3015 BDU
Alloscardovia omnicolens Gram+, Irregularly shaped rods, aerobic Blood, urine, oral cavity, tonsils 2 Yes DSM 21503T DSM, VA20903_2_10 ERL
Alternaria alternata Cases leaf spots and upper respiratory tract infections Fungus Respiratory tract Yes RV07_02 22 VML
Amycolatopsis alba Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 44262T DSM
Amycolatopsis albidoflavus Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis australiensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis azurea Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 43854T DSM
Amycolatopsis balhimycina Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 44591T DSM
Amycolatopsis benzoatilytica Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis circi Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis coloradensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 44225T DSM
Amycolatopsis decaplanina Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis echigonensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis equina Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis eurytherma Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis fastidiosa Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements Yes DSM 43855T DSM
Amycolatopsis halophila Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis halotolerans Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis helveola Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis hippodromi Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis japonica Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 44213T DSM
Amycolatopsis jejuensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis kentuckyensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements equine placenta 1 Yes DSM 44652T DSM
Amycolatopsis keratiniphila ssp keratiniphila Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 44409T DSM
Amycolatopsis lexingtonensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements equine placenta 1 Yes DSM 44653T DSM
Amycolatopsis lurida Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 43134T DSM
Amycolatopsis marina Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis mediterranei Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 40773 DSM, DSM 43304T DSM
Amycolatopsis methanolica Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis minnesotensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 44988T DSM
Amycolatopsis nigrescens Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis niigatensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis orientalis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis palatopharyngis Putative pathogen Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements Respiratory tract 1 No
Amycolatopsis pigmentata Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis plumensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis pretoriensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements equine placenta 1 Yes DSM 44654T DSM
Amycolatopsis regifaucium Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis rifampicinica Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis rubida Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis saalfeldensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis sacchari Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis salitolerans Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis samaneae Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis sulphurea Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 46092T DSM
Amycolatopsis tahailandensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis taiwanensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis thermoflava Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis thermophila Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis tolypomycina Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 Yes DSM 44544T DSM
Amycolatopsis tucumanensis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis ultiminotia Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis vancoresmycina Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis viridis Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Amycolatopsis xylanica Gram+, non-acid-fast, non-motile actinomycetes that form branched vegetative hyphae, undergo fragmentation into rod-like and squarish elements 1 No
Anaerobiospirillum succiniciproducens May cause bacteremia Gram-, anaerobe Intestinal gut 2 Yes DLSAS001 DLS
Anaerobiospirillum thomasii Gram-, anaerobe 2 No
Anaerococcus hydrogenalis Anaerobic, cocci, Gram+ feces 1 Yes DSM 7454T DSM, 110706_C2 LUMC
Anaerococcus lactolyticus Anaerobic, cocci, Gram+ vaginal discharge 1 Yes DSM 7456T DSM
Anaerococcus murdochii Anaerobic, cocci, Gram+ skin ulcer 2 Yes DSM 21462T DSM
Anaerococcus octavius Anaerobic, cocci, Gram+ 1 Yes DSM 10024 DSM, DSM 11663T DSM
Anaerococcus prevotii Anaerobic, cocci, Gram+ human plasma, skin 1 Yes DSM 20473 DSM, DSM 20548T DSM
Anaerococcus sp Anaerobic, cocci, Gram+ Yes 58 RLT, HU43546_1 PNU, 110706_B9 LUMC
Anaerococcus tetradius Anaerobic, cocci, Gram+ vagina 1 Yes 123 RLT, DSM 2951T DSM
Anaerococcus vaginalis Anaerobic, cocci, Gram+ Urovaginal tract 1 Yes DSM 7457T DSM
Anaerotruncus colihominis Yes 272 RLT
Anaplasma bovis Beningn bovine rickettsiosis Anaplasma, Gram- bacteria 2 No
Anaplasma caudatum infects with A. marginale Anaplasma, Gram- bacteria null 2 No
Anaplasma centrale Mild form of anaplsmosis in cattle Anaplasma, Gram- bacteria null 2 No
Anaplasma marginale Anaplsmosis in ruminants Anaplasma, Gram- bacteria null 2 No
Anaplasma ovis Anaplsmosis in sheep Anaplasma, Gram- bacteria null 2 No
Anaplasma phagocytophilum Anaplsmosis in animals, human granulocytic anaplasmosis (tick borne) Anaplasma, Gram- bacteria Neutrophil obligate, blood samples, animal samples 2 No
Anaplasma platys canine infectious cyclic thrombocytopenia Anaplasma, Gram- bacteria Canine blood 2 No
Aneurinibacillus aneurinilyticus Gram+ sporeforming, motile, bacillus or coccobacillus feces 1 Yes DSM 5562T DSM
Aneurinibacillus danicus Gram+ sporeforming, motile, bacillus or coccobacillus 1 No
Aneurinibacillus migulanus Gram+ sporeforming, motile, bacillus or coccobacillus 1 Yes DSM 2895T DSM
Aneurinibacillus terranovensis Gram+ sporeforming, motile, bacillus or coccobacillus 1 No
Aneurinibacillus thermoaerophilus null Gram+ sporeforming, motile, bacillus or coccobacillus plants, soil 1 No null null null
Aquincola tertiaricarbonis Gram-, obligately aerobic, motile oxidase positive water 1 Yes CIP PAH, L108 PAH, L10T PAH
Arcanobacterium haemolyticum Rare cause of pharyngitis, endocarditis and skin ulcers Gram+ facultative anaerobic catalase neg, pleomorphic rods farm animals 2 Yes DSM 20595T DSM, Cory_87 IBS, Cory_90 IBS, DSM 20595T UGV, UGV 6879 UGV, UGV P3333 UGV
Arcanobacterium hippocoleae Vaginitis in horses Gram+ facultative anaerobic catalase neg, pleomorphic rods Horse vagina 2 Yes DSM 15539T DSM
Arcanobacterium phocae Gram+ facultative anaerobic catalase neg, pleomorphic rods 2 Yes DSM 10004 DSM, DSM 10002T DSM, DSM 10003 DSM, DSM 10002T UGV, UGV 2689 UGV, UGV 2878 UGV, UGV 2880 UGV, UGV 2883 UGV
Arcanobacterium pluranimalium Gram+ facultative anaerobic catalase neg, pleomorphic rods lung abscesses in deer and liver abscesses, mastitis, endometritis, abortions and endocarditis in cattle 2 Yes DSM 13483T UGV, DSM 13483T DSM
Arcanobacterium wilhelmae Vaginal tract of Rhinoceros unicornis. 2 No NO [BRU 7854] ARCANOBACTERIUM WILHELMAE CVUAS 647 CVUAS, CVUAS 647 CVUAS Further Information on MALDI-UP: http://maldi-up.ua-bw.de
Arcobacter butzleri gastroenteritis, diarrhea Gram-, spiral shaped Feces 2 Yes 347_98 NVU, 460_98 NVU, DSM 7301 DSM, DSM 8739T DSM
Arcobacter cibarius Gram-, spiral shaped 2 Yes DSM 17680T DSM
Arcobacter cryaerophilus enteritis and bacteremia Gram-, spiral shaped feces, blood 2 Yes CCUG 17801T NVU, T277 CPB, DSM 7289T DSM, V441 CPB, QBR_3911 QBC, QBR_3998 QBC
Arcobacter defluvii Gram-, spiral shaped water 1 No
Arcobacter ellisii Gram-, spiral shaped 1 No
Arcobacter halophilus Gram-, spiral shaped water 1 Yes DSM 18005T DSM
Arcobacter marinum Gram-, spiral shaped 1 No
Arcobacter molluscorum Gram-, spiral shaped 1 No
Arcobacter mytili Gram-, spiral shaped 1 No
Arcobacter nitrofigilis Gram-, spiral shaped Roots, nitrogen fixating 1 Yes DSM 7299T DSM
Arcobacter skirrowii diarrhea Gram-, spiral shaped Feces 1 Yes CCUG 10374T NVU, DSM 7302T DSM
Arcobacter thereius Gram-, spiral shaped 1 No
Arcobacter trophiarum Gram-, spiral shaped 1 No
Aromatoleum alkani Rod, facultative aerobic, motile Gram- Yes HxN1 MPB
Aromatoleum anaerobicus Rod, facultative aerobic, motile Gram- Yes LuFRes1 MPB
Aromatoleum aromaticum Rod, facultative aerobic, motile Gram- Yes EbN1 MPB
Aromatoleum bremensis Rod, facultative aerobic, motile Gram- Yes PbN1 MPB
Aromatoleum buckelii Rod, facultative aerobic, motile Gram- Yes U120 MPB
Aromatoleum diolicum Rod, facultative aerobic, motile Gram- Yes 22Lin MPB
Aromatoleum evansii Rod, facultative aerobic, motile Gram- Yes KB740 MPB
Aromatoleum pretroleum Rod, facultative aerobic, motile Gram- Yes ToN1 MPB
Aromatoleum terpenicum Rod, facultative aerobic, motile Gram- Yes pCyN1 MPB
Aromatoleum tolulyticus Rod, facultative aerobic, motile Gram- Yes Tol4 MPB
Aromatoleum toluolicum Rod, facultative aerobic, motile Gram- Yes T MPB
Aromatoleum toluvorans Rod, facultative aerobic, motile Gram- Yes Td21 MPB
Arsenicicoccus dermatophilus Gram+, aerobe Environment 2 Yes DSM 25571T DSM, DSM 25572 DSM
Arsenicicoccus piscis Gram+, aerobe Environment 1 No
Arsenicoccus bolidensis Gram+, aerobe Environment 2 Yes DSM 15745T DSM, DSM 30750 DSM
Arsenophonus nasoniae Pathogen of male wasp eggs Gram-, rods, occasionally filamentous, non motile, facultative anaerobe Wasps 1 Yes DSM 15247T HAM
Arthroascus schoenii Yeast Yes CBS 2556 CBS
Arthrobacter agilis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter albidus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter albus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter alkaliphilus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter alpinus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter antarcticus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter ardleyensis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 17432T DSM
Arthrobacter arilaitensis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 16368T DSM
Arthrobacter aurescens Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 20116T DSM, HKI 11247 HKJ
Arthrobacter bergerei Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 16367T DSM
Arthrobacter castelli Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter chlorophenolicus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter citreus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 20133T DSM, IMET 10680T HKJ
Arthrobacter creatinolyticus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes 0807M08029702 IBS, DSM 15881T DSM
Arthrobacter cryoconiti Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter cryotolerans Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter crystallopoietes Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 20117T DSM
Arthrobacter cumminsii Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil, urine, skin infections 1 Yes 108 PIM, 7253060 SLT, C2 MVO, DSM 10493T DSM, DSM 10494 DSM
Arthrobacter defluvii Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter echigonensis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter equi Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter flavus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes CIP 107766T CIP
Arthrobacter gandavensis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 15046T DSM
Arthrobacter gangotriensis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 15796T DSM
Arthrobacter globiformis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 20124T DSM
Arthrobacter histidinolovorans Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 20115T DSM
Arthrobacter humicola Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter ilicis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 20138T DSM
Arthrobacter kerguelensis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 15797T DSM
Arthrobacter koreensis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 16760T DSM
Arthrobacter livingstonensis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter luteolus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 13067T DSM
Arthrobacter methylotrophus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter monumenti Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 16405T DSM
Arthrobacter mysorens Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 12798T DSM
Arthrobacter nasiphocae Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 13988T DSM
Arthrobacter nicotianae Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil, air 1 Yes IMET 10353T HKJ
Arthrobacter nicotinovorans Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 420T DSM
Arthrobacter niigatensis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter nitroguajacolicus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes CIP 108435T CIP
Arthrobacter oryzae Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter oxydans Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil, air 1 Yes DSM 20119T DSM, IMET 10684T HKJ
Arthrobacter parietis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 16404T DSM
Arthrobacter pascens Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 20545T DSM
Arthrobacter phenanthrenivorans Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter pigmenti Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter polychromogenes Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes B253 UFL, DSM 20136T DSM, IMET 11071T HKJ
Arthrobacter protophormiae Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 20168T DSM
Arthrobacter psychrochitiniphilus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter psychrolactophilus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 15612T DSM, DSM 15454T DSM
Arthrobacter psychrophenolicus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter pyridinolis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes B384 UFL
Arthrobacter ramosus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes IMET 10685T HKJ
Arthrobacter rhombi Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter roseus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 14508T DSM
Arthrobacter russicus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 14555T DSM
Arthrobacter sanguinis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes IMET 10685T HKJ
Arthrobacter scleromae Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 17756T DSM
Arthrobacter soli Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 14508T DSM
Arthrobacter sp Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes P1 B386 UFL, AP_125_4_09 ERL
Arthrobacter stackebrandtii Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 16005T DSM
Arthrobacter subterraneus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 14508T DSM
Arthrobacter sulfonivorans Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 14002T DSM
Arthrobacter sulfureus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 20167T DSM, B571 UFL
Arthrobacter tecti Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 16407T DSM
Arthrobacter tumbae Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 16406T DSM
Arthrobacter uratoxydans Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes HKI 11492 HKJ, DSM 20648 DSM, DSM 20647T DSM
Arthrobacter ureafaciens Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 Yes DSM 20126T DSM
Arthrobacter viscosus Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil 1 No
Arthrobacter woluwensis Obligate aerobe, Gram+, rods during exponential growth, cocci in stationary phase Soil, blood culture 1 Yes DSM 10495T DSM
Arthroderma benhamiae Fungus Yes 24 VML
Arthrographis_kalrae[ana]# (Eremomyces_langeronii[teleo]) Yes MY131_10 ERL
Aspergillus brasiliensis Fungus Yes ATCC 16404 K7444 HED
Aspergillus flavus Fungus Yes 126 RV4_06 VML, 1081 PFM
Aspergillus fumigatus Fungus Yes 1015 PFM, 43_d VML, 45_II VML, 47_6 VML, 47_6_Rev VML
Aspergillus fumigatus wild Fungus Yes VML
Aspergillus niger Fungus Yes Isolat R1 HED, ATCC 6275 v-EMP_CH_02 HED, ATCC 6275 K7440 HED, ATCC 15475 K7443 HED, 21 VML, 1069 PFM
Aspergillus terreus Fungus Yes 1080 PFM, 84 VML
Aspergillus versicolor Fungus Yes RV07_01 19 VML
Aspergillus_thermomutatus[ana] (Neosartorya_pseudofischeri[teleo]#) Fungus Yes RV_04 VML
Atopobium fossor Abcess in horses Gram+, rod or elliptical shaped, anaerobic Horse pharynx 2 No
Atopobium minutum Bacterial vaginosis Gram+, rod or elliptical shaped, anaerobic vagina 2 Yes DSM 20586T DSM, 12 RLT, DSM 20585 DSM
Atopobium parvulum Gram+, rod or elliptical shaped, anaerobic 1 Yes DSM 20469T DSM, P10flue_re3AN USH, P2bue_li4AN USH, P5bue_3_6_1AN USH, P9bue_16_1AN USH, VA29867_11 ERL
Atopobium rimae Gram+, rod or elliptical shaped, anaerobic mouth 1 Yes BB_JD29_234 MLB, P8bue_re4AN USH, P8flue_re4AN USH
Atopobium sp Gram+, rod or elliptical shaped, anaerobic 2 Yes 1H12053794_5e MVD
Atopobium vaginae Bacterial vaginosis Gram+, rod or elliptical shaped, anaerobic vagina, normal flora 1 Yes VA_14183_00 15 UKE, DSM 15829T DSM
Aureimonas altamirensis Yes 284 RLT
Aureobasidium pullulans Hypersensitivity pneumonitis Yeast-like fungus Plants, humidifiers Yes 8125042_b SLT, MY_RV5_2008 ERL, RV_05 VML
Austwickia chelonae Yes DSM 44178T DSM
Avibacterium avium Can cause sinusitis and pneumonia in calves Gram-, facultatively anaerobic, rods Upper respiratory tract of chicken 1 Yes DSM 18557T DSM
Avibacterium endocarditidis Gram-, facultatively anaerobic, rods Valvar endocarditis in chicken 2 Yes DSM 18224T DSM
Avibacterium gallinarum Low grade disese Gram-, facultatively anaerobic, rods Upper respiratory tract of chicken 2 Yes DSM 17481T DSM
Avibacterium paragallinarum Infectious coryza in chickens Gram-, facultatively anaerobic, rods Upper respiratory tract of chicken 2 No
Avibacterium volantium Gram-, facultatively anaerobic, rods 1 Yes DSM 18578T DSM
Azoarcus anaerobius Gram-, single polar flagellum, facultatively anaerobic, rods 1 No
Azoarcus buckelii Gram-, single polar flagellum, facultatively anaerobic, rods 1 No
Azoarcus communis Gram-, single polar flagellum, facultatively anaerobic, rods Plants 1 Yes Swub3 MPB
Azoarcus evansii Gram-, single polar flagellum, facultatively anaerobic, rods Plants 1 No
Azoarcus indigens Gram-, single polar flagellum, facultatively anaerobic, rods Plants 1 Yes VB32 MPB
Azoarcus sp Gram-, single polar flagellum, facultatively anaerobic, rods 1 Yes BH72 MPB
Azoarcus toluclasticus Gram-, single polar flagellum, facultatively anaerobic, rods water 1 Yes VB32 MPB
Azoarcus tolulyticus Gram-, single polar flagellum, facultatively anaerobic, rods Petroloeum contaminated water 1 Yes VB32 MPB
Azoarcus toluvorans Gram-, single polar flagellum, facultatively anaerobic, rods soil 1 Yes VB32 MPB
Azohydromonas australica Gram-, short to straight coccoid rods or rods, motile Soil 1 No
Azohydromonas lata Gram-, short to straight coccoid rods or rods, motile Soil 1 Yes DSM 1122T DSM
Bacillus acidiceler Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores environment, dust 1 No
Bacillus acidicola Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Moss 1 Yes DSM 14745T DSM
Bacillus acidiproducens Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 No
Bacillus aeolius Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Water from culcanic origin 1 No
Bacillus aerius Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Air 1 No
Bacillus aerophilus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores air 1 No
Bacillus agaradhaerens Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 Yes DSM 8721T DSM
Bacillus aidingensis Gram+, rod shaped, produce endospores sediment in salt lake 1 No
Bacillus akibai Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soda lake 1 Yes CIP 109018T CIP
Bacillus alcalophilus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Alkaline water 1 Yes B446 UFL, DSM 485T DSM
Bacillus algicola Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Brown algea 1 Yes CIP 107850T CIP
Bacillus alkalinitrilicus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 No
Bacillus alkalisediminis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 No
Bacillus alkalitelluris Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 No
Bacillus altitudinis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Air 1 Yes CS 542 4 BRB, CS 809 1 BRB
Bacillus alveayuensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Deep sea sediment 1 Yes CIP 108784T CIP
Bacillus amyloliquefaciens Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 Yes CIP 103265T CIP
Bacillus amyloliquefaciens ssp amyloliquefasciens Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 No
Bacillus amyloliquefaciens ssp plantarum Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 No
Bacillus aquimaris Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Seawater 1 Yes DSM 16205T DSM
Bacillus arsenicus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 Yes 4_2 TUB, DSM 15822T DSM
Bacillus aryabhattai Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 No
Bacillus asahii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 Yes CIP 108638T CIP
Bacillus atrophaeus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Water 1 Yes DSM 2277 DSM,DSM 5551 DSM, DSM 675 DSM, DSM 7264T DSM
Bacillus aurantiacus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soda lake 1 No
Bacillus azotoformans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 Yes DSM 1046T DSM
Bacillus badius Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Feces, dust, water, food, antacids 1 Yes DSM 23T DSM
Bacillus barbaricus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 Yes DSM 14730T DSM
Bacillus bataviensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 Yes DSM 15601T DSM
Bacillus beijingensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 No
Bacillus benzoevorans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 Yes DSM 5391T DSM
Bacillus berkeleyi Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 No
Bacillus beveridgei Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 No
Bacillus bogoriensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 No
Bacillus boroniphilus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 No
Bacillus butanolivorans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 No
Bacillus canaveralius Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 No
Bacillus carboniphilus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 Yes DSM 17613T DSM
Bacillus cecembensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 No
Bacillus cellulosilyticus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 Yes DSM 2522T DSM
Bacillus cereus Gastroenteritis, ocular infections, bacteremia Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Blood samples, feces and urine samples, optical swab 2 Yes 994000168 LBK, 4080 LBK, DSM 31T DSM ATCC 4342 SMI, ATCC 10702 SMI, ATCC 10987 SMI, F2085-98 SMI, F4810-72 SMI, MHI 1305 SMI, F837-76 SMI, IH41385 SMI, MHI 13 SMI, NVH 0597-98 SMI, NVH 0597-99 SMI, NVH 1518-99 SMI, RIVM BC67 SMI, SJ1 SMI, WSBC 10286 SMI, WSBC 10483 SMI, BC6901 SMI, SMI environmental isolate SMI
Bacillus chagannorensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soda lake 1 Yes CIP 109712T CIP
Bacillus chungangensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Sea water 1 No
Bacillus cibi Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Seafood 1 Yes DSM 16189T DSM
Bacillus circulans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CS 220_1a BRB, DSM 11T DSM
Bacillus clarkii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 8720T DSM
Bacillus clausii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 8716T DSM
Bacillus coagulans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil, acid foods 1 Yes B321 UFL, DSM 1T DSM
Bacillus coahuilensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus cohnii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 6307T DSM
Bacillus daliensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus decisifrondis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus decolorationis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 14890T DSM
Bacillus drentensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 15600T DSM
Bacillus endophyticus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 13796T DSM
Bacillus endoradicis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus farraginis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16013T DSM
Bacillus fastidiosus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 Yes DSM 91T DSM
Bacillus firmus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 Yes DSM 12T DSM
Bacillus flexus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 1320T DSM, 100331_30 USP SMI M14-03 SMI
Bacillus foraminis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus fordii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16014T DSM
Bacillus fortis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16012T DSM
Bacillus fumarioli Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus funiculus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 15141T DSM
Bacillus galactosidilyticus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 15595T DSM
Bacillus galliciensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus gelatini Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus gibsonii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CS 231_11b BRB, DSM 8722T DSM
Bacillus ginsenghumi Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus ginsengi Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus graminis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus halmapalus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 8723T DSM
Bacillus halochares Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus halodurans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 497T DSM
Bacillus hemicellulosilyticus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16731T DSM
Bacillus hemicentroti Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus herbersteinensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus horikoshii produces tetrodotoxin (TTX) Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores liver of fish isolated from soil 1 Yes DSM 8719T DSM alkaliphilic and alkalitolerant, aerobic endospore-forming bacteria.
Bacillus horneckiae Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Yes DSM 23495T DSM
Bacillus horti Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 12751T DSM
Bacillus humi Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16318T DSM
Bacillus hwajinpoensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16206T DSM
Bacillus idriensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CIP 109494T CIP
Bacillus indicus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 15820T DSM
Bacillus infantis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CIP 109493T CIP
Bacillus infernus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus iranensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus isabeliae Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus isronensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus jeotgali Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 18226T DSM
Bacillus kochii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus koreensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16467T DSM
Bacillus kribbensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus krulwichiae Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 18225T DSM
Bacillus lehensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus lentus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 Yes DSM 9T DSM
Bacillus licheniformis cause of abortion in cattle, sheep and pigs, and also isolated from suppurative lesions of horses and cattle Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil, plants 1 Yes 992000432 LBK, CS 54_1 BRB, DSM 13T DSM
Bacillus litoralis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16303T DSM
Bacillus localis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus luciferensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 18845T DSM
Bacillus luteolus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus macauensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 17262T DSM
Bacillus macayae Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus mannanilyticus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16130T DSM
Bacillus marisflavi Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16204T DSM
Bacillus marmarensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus massiliensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No 1I12072947_1e MVD
Bacillus megaterium Non-pathogenic Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Soil 1 Yes DSM 32T DSM
Bacillus methanolicus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus methylotrophicus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus mojavensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 9205T DSM
Bacillus muralis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16288T DSM
Bacillus murimartini Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus mycoides Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores soil 1 Yes DSM 2048T DSM
Bacillus nanhaiensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus nanhaiisediminis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus nealsonii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 15077T DSM
Bacillus neizhouensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus niabensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus niacini Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 2923T DSM
Bacillus novalis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 15603T DSM
Bacillus oceanisediminis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus odysseyi Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 18869T DSM
Bacillus okhensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CIP 109247T CIP
Bacillus okuhidensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 13666T DSM
Bacillus oleronius Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 9356T DSM
Bacillus oshimensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CIP 108751T CIP
Bacillus panaciterrae Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus patagoniensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16117T DSM
Bacillus persepolensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus plakortidis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus pocheonensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus polygoni Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus pseudalcaliphilus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 8725T DSM
Bacillus pseudofirmus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CS 123_1a1 BRB, DSM 8715T DSM, DSM 2516 DSM, DSM 9718 DSM, DSM 9746 DSM, CS 629_2b BRB
Bacillus pseudomycoides Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 12442T DSM
Bacillus psychrosaccharolyticus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 6T DSM
Bacillus pumilus can cause food poisoning Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 13835 DSM, DSM 1794 DSM, DSM 27T DSM, DSM 354 DSM, IAM 12050 PAH, IAM 12469 PAH
Bacillus purgationiresistens Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus qingdaonensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus rigui Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus ruris Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 17057T DSM
Bacillus safensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CIP 109412 CIP
Bacillus salarius Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16461T DSM
Bacillus saliphilus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus selenatarsenstis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus selenitireducens Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus seohaeanensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 16464T DSM
Bacillus shackletonii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 18868T DSM
Bacillus siamensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus simplex Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CS 206_1aI BRB, DSM 1321T DSM
Bacillus siralis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 13140T DSM
Bacillus smithii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CIP 103790T CIP, DSM 4216T DSM
Bacillus soli Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 15604T DSM
Bacillus solisalsi Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus sonorensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 13779T DSM
Bacillus sp Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes LB_101250b_09 ERL
Bacillus sporothermodurans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 10599T DSM
Bacillus stratosphericus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores Air 1 No
Bacillus subterraneus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 13966T DSM
Bacillus subtilis can cause food poisoning Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes 107_W_7_QSA IBS, DSM 5552 DSM, DSM 5611 DSM
Bacillus subtilis ssp inaquosorum Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus subtilis ssp spizizenii Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 15029T DSM
Bacillus subtilis ssp subtilis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 10T DSM, DSM 5660 DSM
Bacillus taenensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus taquilensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus thermantarcticus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus thermoamylovorans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes 10w413986 RLH
Bacillus thermocloacae Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus thermolactis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus thioparans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes CIP 109765T CIP
Bacillus thuringiensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 2046T DSM 4CC1 SMI, ATCC 10792 SMI, ATCC 35646 SMI, BGSC 4AJ1 SMI, BGSC 4AW1 SMI, BGSC 4BD1 SMI, BGSC 4Y1 SMI, CIP 105674 SMI
Bacillus trypoxylicola Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus tusciae Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacillus vallismortis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 11031T DSM
Bacillus vedderi Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 9768T DSM
Bacillus vietnamensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 18898T DSM
Bacillus vireti Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 15602T DSM
Bacillus wakoensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 2521T DSM
Bacillus weihenstephanensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 11821T DSM DSM 11821 SMI
Bacillus xiaoxiensis Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 No
Bacteroides acidifaciens Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides barnesiae Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides caccae Gram-, bacilli, anaerobe but aerotolerant feces 2 Yes 103 PIM, DSM 19024T DSM
Bacteroides cellulosilyticus Gram-, bacilli, anaerobe but aerotolerant 2 Yes CCUG 56000 CCUG, DSM 14838T DSM
Bacteroides cellulosolvens Gram-, bacilli, anaerobe but aerotolerant water 1 No
Bacteroides chinchillae Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides clarus Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides coagulans Infections following gastrointestinal surgery Gram-, bacilli, anaerobe but aerotolerant Gastrointestinal tract 2 Yes DSM 20705T DSM
Bacteroides coprocola Gram-, bacilli, anaerobe but aerotolerant Feces 2 Yes DSM 17136T DSM
Bacteroides coprophilus Gram-, bacilli, anaerobe but aerotolerant Feces 2 Yes DSM 18228T DSM
Bacteroides coprosuis Gram-, bacilli, anaerobe but aerotolerant Pig feces 2 No
Bacteroides dorei Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides eggerthii Gram-, bacilli, anaerobe but aerotolerant feces 2 Yes DSM 20697T DSM
Bacteroides faecichinchillae Gram-, bacilli, anaerobe but aerotolerant Chinchilla feces 2 No
Bacteroides faecis Gram-, bacilli, anaerobe but aerotolerant Human feces 2 No
Bacteroides finegoldii Gram-, bacilli, anaerobe but aerotolerant 2 Yes DSM 17565T DSM
Bacteroides fluxus Gram-, bacilli, anaerobe but aerotolerant 2 Yes DSM 22534T DSM
Bacteroides fragilis Infections following gastrointestinal surgery Gram-, bacilli, anaerobe but aerotolerant Gastrointestinal tract 2 Yes CCM 4508 CCM, CCM 4509 CCM, DSM 2151T DSM, DSM 9669 DSM, HU26938_2 PNU, MB_5088_05 THL, MB_9009_05 THL, PNU BF_6712 PNU, PNU R19811 PNU
Bacteroides galacturonicus Gram-, bacilli, anaerobe but aerotolerant feces 2 No
Bacteroides gallinarum Gram-, bacilli, anaerobe but aerotolerant 2 Yes DSM 18171T DSM
Bacteroides graminisolvens Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides helcogenes Gram-, bacilli, anaerobe but aerotolerant Swine abcess 2 No
Bacteroides intestinalis Gram-, bacilli, anaerobe but aerotolerant 2 Yes DSM 17393T DSM, SW20 PNU, 110706_E9 LUMC
Bacteroides massiliensis Gram-, bacilli, anaerobe but aerotolerant 2 Yes DSM 17679T DSM
Bacteroides nordii Gram-, bacilli, anaerobe but aerotolerant 2 Yes 49151_2 PNU, DSM 18764T DSM, 22710_0377_Ana IBS
Bacteroides oleiciplenus Gram-, bacilli, anaerobe but aerotolerant 2 Yes DSM 22535T DSM
Bacteroides ovatus Gram-, bacilli, anaerobe but aerotolerant 2 Yes 11483_2 PNU, 32456_1 PNU, 53152 PNU, DSM 1896T DSM, HU36898_1 PNU, IBS_MS_21 IBS
Bacteroides paurosaccharolyticus Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides pectinophilus Gram-, bacilli, anaerobe but aerotolerant feces 1 No
Bacteroides plebeius Gram-, bacilli, anaerobe but aerotolerant 2 Yes DSM 17135T DSM
Bacteroides polypragmatus Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides propionicifaciens Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides pyogenes Gram-, bacilli, anaerobe but aerotolerant 2 Yes 995000355 LBK, DSM 19673T DSM, DSM 20611T DSM, DSM 20612 DSM
Bacteroides rodentium Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides salanitronis Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides salyersiae Gram-, bacilli, anaerobe but aerotolerant 2 Yes DSM 18765T DSM, IBS_MS_27 IBS, 110706_A7 LUMC, 110706_F7 LUMC
Bacteroides sartorii Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides stercorirosoris Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides stercoris Gram-, bacilli, anaerobe but aerotolerant feces 2 Yes DSM 19555T DSM
Bacteroides thetaiotaomicron Infections following gastrointestinal surgery Gram-, bacilli, anaerobe but aerotolerant Gastrointestinal tract 2 Yes 53164 PNU, ATCC 29742 PNU, CCM 4713 CCM, CCM 6027 CCM, CCM 6028 CCM, DSM 2079T DSM, HU68218_5 PNU, DSM 2255 DSM 2, 71280_ PNU 2
Bacteroides uniformis Infections following gastrointestinal surgery Gram-, bacilli, anaerobe but aerotolerant Gastrointestinal tract 2 Yes ATCC 8492T THL, DSM 6597T DSM, HU33120_3_13 PNU, 110706_F9 LUMC
Bacteroides ureolyticus Gram-, bacilli, anaerobe but aerotolerant Urine 2 Yes DSM 20703T DSM, HU33416 PNU Synonym Campylobacter ureolyticus
Bacteroides vulgatus Infections following gastrointestinal surgery Gram-, bacilli, anaerobe but aerotolerant Gastrointestinal tract 2 Yes DSM 1447T DSM, DSM 3289 DSM, HU40347_2 PNU, PNU 1536_5 PNU, PNU 71838 PNU
Bacteroides xylanisolvens Gram-, bacilli, anaerobe but aerotolerant 2 No
Bacteroides xylanolyticus Gram-, bacilli, anaerobe but aerotolerant 2 No
Balneatrix alpica Pneumonia and meningitis associated with spa therapy centres Gram-, bacilli or coccibacilli, polymorphic cerebrospinal fluid, blood, water 2 Yes CIP 103589T HAM
Bartonella alsatica rarely infects humans Gram-, facultative intercellular parasites rabbit blood 2 No
Bartonella bacilliformis Carrion's fever Gram-, facultative intercellular parasites blood 2 No
Bartonella birtlesii Gram-, facultative intercellular parasites blood 2 No
Bartonella bovis Gram-, facultative intercellular parasites blood 2 No
Bartonella capreoli Gram-, facultative intercellular parasites blood 2 No
Bartonella chomelii Gram-, facultative intercellular parasites blood 2 No
Bartonella clarridgeiae cat scratch disease Gram-, facultative intercellular parasites blood 2 No
Bartonella coopersplainsensis Gram-, facultative intercellular parasites blood 2 No
Bartonella doshiae Gram-, facultative intercellular parasites animal blood 2 No
Bartonella elizabethae Gram-, facultative intercellular parasites blood 2 No
Bartonella grahamii endocarditis and neuroretinitis Gram-, facultative intercellular parasites animal blood 2 No
Bartonella henselae cat scratch disease, bacillary angiomatosis, peliosis hepatis, endocarditis, bacteremia with fever and neuroretinitis Gram-, facultative intercellular parasites blood 2 No
Bartonella japonica Gram-, facultative intercellular parasites blood 2 Yes CIP 109861T CIP
Bartonella koehlerae Gram-, facultative intercellular parasites animal blood 2 No
Bartonella peromysci Gram-, facultative intercellular parasites blood 2 No
Bartonella queenslandensis Gram-, facultative intercellular parasites blood 2 No
Bartonella quintana trench fever Gram-, facultative intercellular parasites blood 2 Yes 103739 UMR
Bartonella rattaustraliani Gram-, facultative intercellular parasites blood 2 No
Bartonella rochalimae Carrion's disease-like symptoms Gram-, facultative intercellular parasites blood 2 No
Bartonella schoenbuchensis Gram-, facultative intercellular parasites blood 2 No
Bartonella silvatica Gram-, facultative intercellular parasites blood 2 No
Bartonella talpae Gram-, facultative intercellular parasites blood 2 No
Bartonella taylorii Gram-, facultative intercellular parasites blood 2 No
Bartonella tribocorum Gram-, facultative intercellular parasites blood 2 No
Bartonella vinsonii Endocarditis Gram-, facultative intercellular parasites blood 2 No
Bartonella vinsonii ssp arupensis Endocarditis Gram-, facultative intercellular parasites blood 2 No
Bartonella vinsonii ssp berkhoffii Endocarditis Gram-, facultative intercellular parasites blood 2 No
Bartonella vinsonii ssp vinsonii Endocarditis Gram-, facultative intercellular parasites blood 2 No
Beauveria bassiana Fungus Soil Yes VML
Bergeyella zoohelcum bacteremia caused by cat or dog bite Gram-, rods, aerobic, non motile Cat and dog bites, scratches, sputum, upper respiratory tract 1 Yes LMG 8351T HAM
Bibersteinia trehalosi Yes CCUG 12393 CCUG, CCUG 35739 CCUG, CCUG 37711 CCUG, CCUG 46489 CCUG
Bifidobacterium actinocoloniiforme Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium adolescentis Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20083T DSM, DSM 20086 DSM, DSM 20087 DSM, VA14300_09 ERL
Bifidobacterium angulatum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20098T DSM, DSM 20225 DSM
Bifidobacterium animalis Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20105 DSM
Bifidobacterium animalis ssp animalis Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20104T DSM
Bifidobacterium animalis ssp lactis Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 10140 DSM
Bifidobacterium asteroides Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20089T DSM, DSM 20431 DSM
Bifidobacterium biavatii Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium bifidum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes 17_283 IBS, 48 PIM, DSM 20082 DSM, DSM 20215 DSM, DSM 20239 DSM, DSM 20456T DSM
Bifidobacterium bohemicum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium bombi Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium boum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20432T DSM
Bifidobacterium breve Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20091 DSM, DSM 20213T DSM, 110706_G6 LUMC
Bifidobacterium callitrichos Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium catenulatum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 16992T DSM, DSM 20224 DSM
Bifidobacterium choerinum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20434T DSM
Bifidobacterium coryneforme Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20216T DSM
Bifidobacterium cuniculi Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium dentium Opportunistic pathogen, caries Gram+, non motile, often branched anaerobic bacteria Mouth 1 Yes DSM 20084 DSM, DSM 20221 DSM, DSM 20436T DSM
Bifidobacterium gallicum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20093T DSM
Bifidobacterium gallinarum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20670T DSM
Bifidobacterium indicum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium kashiwanohense Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium longum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes BIFIDO IBS
Bifidobacterium longum ssp infantis Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20088T DSM
Bifidobacterium longum ssp longum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20090 DSM, DSM 20097 DSM, DSM 20218 DSM
Bifidobacterium longum ssp suis Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20211T DSM
Bifidobacterium magnum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20220 DSM, DSM 20222T DSM
Bifidobacterium merycicum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 6492T DSM, DSM 6493 DSM, DSM 6494 DSM
Bifidobacterium minimum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20102T DSM
Bifidobacterium mongoliense Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium pseudocatenulatum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20439 DSM
Bifidobacterium pseudolongum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium pseudolongum ssp globosum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium pseudolongum ssp pseudolongum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20099T DSM, DSM 20094 DSM
Bifidobacterium psychraerophilum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium pullorum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20433T DSM
Bifidobacterium reuteri Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium ruminantium Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 6489T DSM, DSM 6491 DSM
Bifidobacterium saeculare Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 6532 DSM, DSM 6533 DSM
Bifidobacterium saguini Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium scardovii Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium stellenboschense Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium stercoris Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium subtile Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium thermacidophilum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 No
Bifidobacterium thermacidophilum ssp porcinum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 17755T DSM
Bifidobacterium thermacidophilum ssp thermacidophilum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 15837T DSM
Bifidobacterium thermophilum Gram+, non motile, often branched anaerobic bacteria Intestines, feces 1 Yes DSM 20209 DSM, DSM 20210T DSM, DSM 20212 DSM
Bifidobacterium tsurumiense Gram+, non motile, often branched anaerobic bacteria Hamster dental plaque 1 No
Bilophila sp Gram-negative anaerobic rod 2 Yes C52 MVO Bilophila wadsworthia?
Blastomonas natatoria Ovoid or rod shaped, Gram- motile, strictly aerobic Fresh water 1 Yes DSM 3183T HAM
Blastomonas ursincola Ovoid or rod shaped, Gram- motile, strictly aerobic Fresh water 1 Yes DSM 9006T HAM
Blautia coccoides Strictly anaerobic, coccoid, non-motile, Gram+ feces 1 Yes 1035_NCTC 11035T BOG
Blautia faecis Strictly anaerobic, coccoid, non-motile, Gram+ Feces 1 No
Blautia glucerasea Strictly anaerobic, coccoid, non-motile, Gram+ 1 No
Blautia hansenii Strictly anaerobic, coccoid, non-motile, Gram+ Feces 1 No
Blautia hydrogenotrophica Strictly anaerobic, coccoid, non-motile, Gram+ Intestines, feces 1 No
Blautia luti Strictly anaerobic, coccoid, non-motile, Gram+ 1 No
Blautia producta Septicemia Strictly anaerobic, coccoid, non-motile, Gram+ Blood 1 No
Blautia schinkii Strictly anaerobic, coccoid, non-motile, Gram+ 1 No
Blautia stercoris Strictly anaerobic, coccoid, non-motile, Gram+ feces 1 No
Blautia wexlerae Strictly anaerobic, coccoid, non-motile, Gram+ feces 2 No
Bordetella avium Gram-, coccobacilli, obligate aerobes except B. petrii Avian samples 2 Yes DSM 11332T DSM, 10_04379_05 VAXM SMI 21 SMI
Bordetella bronchiseptica Gram-, coccobacilli, obligate aerobes except B. petrii Animal samples 2 Yes A220 FLR, REF_023 UZB, REF_022 UZB, INE_047 UZB, DSM 13414T DSM, DSM 10303 DSM, DIV_5526 UZB, BORD_781 UZB, BORD_760 UZB SMI 19 SMI, SMI 20 SMI
Bordetella hinzii Gram-, coccobacilli, obligate aerobes except B. petrii Avian samples 2 Yes DSM 11333T DSM, REF_021 LMG_14052 UZB, REF_024 LMG_15872 UZB, REF_025 LMG_1872 UZB
Bordetella holmesii Gram-, coccobacilli, obligate aerobes except B. petrii 2 Yes REF_027 LMG_15945T UZB, DSM 13416T DSM, REF_026 LMG_15946 UZB
Bordetella parapertussis Pertussis, respiratory tract infection Gram-, coccobacilli, obligate aerobes except B. petrii animal samples, respiratory tract 2 Yes BORD_565 UZB, BORD_611 UZB, BORD_678 UZB, BORD_699 UZB, BORD_722 UZB, BORD_724 UZB, BORD_750 UZB, DSM 13415T DSM, DSM 4922 DSM, REF_028 ATCC_15237 UZB, REF_507 UZB SMI 18 SMI, SMI 16 SMI
Bordetella pertussis Pertussis, respiratory tract infection Gram-, coccobacilli, obligate aerobes except B. petrii respiratory tract 2 Yes BORD_246 UZB, BORD_487 UZB, BORD_631 UZB, BORD_653 UZB, DSM 4923 DSM, DSM 4925 DSM, DSM 4926 DSM, DSM 4927 DSM, DSM 5571T DSM, REF_029 ATCC_9340 UZB SMI 17 SMI, SMI 22 SMI
Bordetella petrii Gram-, coccobacilli, obligate aerobes except B. petrii 2 Yes 09_0665 UZB, DSM 12804T DSM, REF_504 UZB, REF_505 UZB, VA32495_09 ERL
Bordetella sp Gram-, coccobacilli, obligate aerobes except B. petrii 2 Yes REF_502 UZB
Bordetella trematum Gram-, coccobacilli, obligate aerobes except B. petrii 2 Yes REF_197 LMG_13506 UZB, DSM 11334T DSM, REF_198 LMG_14446 UZB
Borrelia afzelii Borreliosis Helical filiform spirochete, anaerobic or microaerophilic Ticks 2 No
Borrelia americana Helical filiform spirochete, anaerobic or microaerophilic Ticks 2 No
Borrelia anserina Helical filiform spirochete, anaerobic or microaerophilic Ticks/fleas 2 No
Borrelia baltazardii Helical filiform spirochete, anaerobic or microaerophilic Ticks/fleas 2 No
Borrelia brasiliensis Helical filiform spirochete, anaerobic or microaerophilic Ticks/fleas 2 No
Borrelia burgdorferi Borreliosis Helical filiform spirochete, anaerobic or microaerophilic Ticks/fleas 2 Yes OE TWF
Borrelia carolinensis Helical filiform spirochete, anaerobic or microaerophilic Ticks/fleas 2 No
Borrelia caucasica Helical filiform spirochete, anaerobic or microaerophilic Ticks/fleas 2 No
Borrelia coriaceae Helical filiform spirochete, anaerobic or microaerophilic Ticks 2 No
Borrelia crocidurae Helical filiform spirochete, anaerobic or microaerophilic Ticks/fleas 2 No
Borrelia dugesii Helical filiform spirochete, anaerobic or microaerophilic Ticks/fleas 2 No
Borrelia duttonii Helical filiform spirochete, anaerobic or microaerophilic Ticks/fleas 2 No
Borrelia garinii Borreliosis Helical filiform spirochete, anaerobic or microaerophilic Ticks, Cat and dogs 2 Yes AE TWF
Borrelia graingeri Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia harveyi Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia hermsii Relapsing fever Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia hispanica Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia japonica Helical filiform spirochete, anaerobic or microaerophilic Ticks, Cat and dogs 2 No
Borrelia latyschewii Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia lusitaniae Borreliosis Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia mazzottii Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia miyamotoi Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia parkeri Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia persica Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia recurrentis Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia sinica Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia spielmanii Borreliosis Helical filiform spirochete, anaerobic or microaerophilic ticks, blood 2 Yes IE TWF
Borrelia tanukii Helical filiform spirochete, anaerobic or microaerophilic Ticks, Cat and dogs 2 No
Borrelia theileri Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia tillae Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia turcica Borreliosis and relapsing fever Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia turdi Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia turicatae Relapsing fever Helical filiform spirochete, anaerobic or microaerophilic 2 No
Borrelia valaisiana Borreliosis Helical filiform spirochete, anaerobic or microaerophilic Cerebral spinal fluid, blood 2 No
Borrelia venezuelensis Relapsing fever Helical filiform spirochete, anaerobic or microaerophilic 2 No
Brachybacterium alimentarium Gram+, aerobe, irregular shaped slender rods, non motile dairy products 1 No
Brachybacterium conglomeratum Gram+, aerobe, irregular shaped slender rods, non motile 1 No
Brachybacterium faecium Gram+, aerobe, irregular shaped slender rods, non motile poultry litter 1 Yes IMET 11352T HKJ
Brachybacterium fresconis Gram+, aerobe, irregular shaped slender rods, non motile 1 No
Brachybacterium muris Gram+, aerobe, irregular shaped slender rods, non motile 1 Yes 7 RLT
Brachybacterium nesterenkovii Gram+, aerobe, irregular shaped slender rods, non motile 1 Yes DSM 9573T DSM, DSM 9574 DSM
Brachybacterium paraconglomeratum Gram+, aerobe, irregular shaped slender rods, non motile poultry litter 1 No
Brachybacterium phenoliresistens Gram+, aerobe, irregular shaped slender rods, non motile 1 No
Brachybacterium rhamnosum Gram+, aerobe, irregular shaped slender rods, non motile corn fermentation 1 No
Brachybacterium saurashtrense Gram+, aerobe, irregular shaped slender rods, non motile 1 No
Brachybacterium squillarum Gram+, aerobe, irregular shaped slender rods, non motile 1 No
Brachybacterium tyrofermentans Gram+, aerobe, irregular shaped slender rods, non motile dairy products 1 No
Brachybacterium zhongshanense Gram+, aerobe, irregular shaped slender rods, non motile 1 No
Brachyspira aalborgi Human intestinal spirochaetosis Gram-, spiral spirochaete obligate anaerobe human colon 1 No
Brachyspira alvinipulli Gram-, spiral spirochaete obligate anaerobe swine intestine No
Brachyspira hyodysenteriae Swine dysentery Gram-, spiral spirochaete obligate anaerobe swine intestine 1 No
Brachyspira innocens Human intestinal spirochaetosis Gram-, spiral spirochaete obligate anaerobe swine intestine 1 No
Brachyspira intermedia Swine diarreha Gram-, spiral spirochaete obligate anaerobe swine intestine 1 No
Brachyspira murdochii Human intestinal spirochaetosis Gram-, spiral spirochaete obligate anaerobe swine intestine 1 Yes DSM 12563T DSM
Brachyspira pilosicoli Human intestinal spirochaetosis Gram-, spiral spirochaete obligate anaerobe swine intestine 2 No GD82 GDD, GD83 GDD
Bradyrhizobium betae Yes DSM 17288T DSM
Bradyrhizobium denitrificans Yes DSM 1113T DSM
Brenneria alni disease on trees Gram-, rods, motile plants, alder 1 Yes DSM 11811T HAM
Brenneria nigrifluens disease on trees Gram-, rods, motile plants, walnut 1 Yes DSM 30175T HAM
Brenneria quercina disease on trees Gram-, rods, motile plants, oak 1 Yes CFBP 3617T MMG, DSM 4561T HAM
Brenneria rubrifaciens disease on trees Gram-, rods, motile plants, walnut 1 Yes CFBP 3619T MMG, DSM 4483T HAM
Brenneria salicis disease on trees Gram-, rods, motile plants, salix 1 Yes DSM 30166T HAM
Brevibacillus agri Gram+, aerobic, motile rods soil 1 Yes DSM 6348T DSM
Brevibacillus aydinogluensis Gram+, aerobic, motile rods soil 1 No
Brevibacillus borstelensis Gram+, aerobic, motile rods soil 1 Yes 5_5 TUB, DSM 6347T DSM
Brevibacillus brevis Gram+, aerobic, motile rods or Gram negative also soil 1 Yes DSM 30T DSM, B324 UFL
Brevibacillus centrosporus Gram+, aerobic, motile rods soil 1 Yes DSM 8445T DSM
Brevibacillus choshinensis Gram+, aerobic, motile rods soil 1 Yes DSM 8552T DSM
Brevibacillus fluminis Gram+, aerobic, motile rods soil 1 No
Brevibacillus formosus Gram+, aerobic, motile rods soil 1 Yes DSM 9885T DSM
Brevibacillus ginsengisoli Gram+, aerobic, motile rods soil 1 No
Brevibacillus invocatus Gram+, aerobic, motile rods soil 1 Yes DSM 16423T DSM
Brevibacillus laterosporus Gram+, aerobic, motile rods soil 1 Yes DSM 25T DSM, DSM 8787 DSM
Brevibacillus levickii Gram+, aerobic, motile rods soil 1 No
Brevibacillus limnophilus Gram+, aerobic, motile rods soil 1 No
Brevibacillus panacihumi Gram+, aerobic, motile rods soil 1 No
Brevibacillus parabrevis Gram+, aerobic, motile rods soil, dairy products 1 Yes 090915_03 LBK, DSM 8376T DSM
Brevibacillus reuszeri Gram+, aerobic, motile rods soil 1 Yes DSM 9887T DSM
Brevibacillus thermoruber Gram+, aerobic, motile rods soil 1 No
Brevibacterium albidum (see Curtobacterium albidum) Gram+, aerobic rods soil 1 Yes (see Curtobacterium albidum)
Brevibacterium antiquum Gram+, aerobic rods soil 1 No
Brevibacterium aurantiacum Gram+, aerobic rods soil 1 Yes DSM 20426T DSM
Brevibacterium avium Gram+, aerobic rods soil 1 No
Brevibacterium casei Sepsis in immunocompromized patiens Gram+, aerobic rods soil 1 Yes 0808M02034001 IBS, 090915_01 LBK, IMET 10997T HKJ
Brevibacterium celere Gram+, aerobic rods soil 1 Yes DSM 15453T DSM
Brevibacterium epidermis Gram+, aerobic rods soil 1 No
Brevibacterium frigoritolerans Gram+, aerobic rods soil 1 No
Brevibacterium halotolerans Gram+, aerobic rods soil 1 No
Brevibacterium iodinum Gram+, aerobic rods soil, skin 1 Yes DSM 20626T DSM, IMET 10995T HKJ
Brevibacterium linens Gram+, aerobic rods dairy products, human skin, soil 1 Yes IMET 11075T HKJ
Brevibacterium luteolum Gram+, aerobic rods soil 1 No
Brevibacterium marinum Gram+, aerobic rods soil 1 Yes DSM 18964T DSM
Brevibacterium massiliense Gram+, aerobic rods soil 1 No
Brevibacterium mcbrellneri Gram+, aerobic rods soil 1 No
Brevibacterium oceani Gram+, aerobic rods soil 1 No
Brevibacterium otitidis Gram+, aerobic rods soil 1 No
Brevibacterium paucivorans Gram+, aerobic rods soil 1 Yes 4 RLT, DSM 13657T DSM
Brevibacterium permense Gram+, aerobic rods soil 1 No
Brevibacterium picturae Gram+, aerobic rods soil 1 Yes DSM 16132T DSM
Brevibacterium pityocampae Gram+, aerobic rods soil 1 No
Brevibacterium ravenspurgense Gram+, aerobic rods soil 1 Yes 2 RLT, 3 RLT, DSM 21258T DSM, DSM 21258T DSM
Brevibacterium salitolerans Gram+, aerobic rods soil 1 No
Brevibacterium samyangense Gram+, aerobic rods soil 1 No
Brevibacterium sandarakinum Gram+, aerobic rods soil 1 No
Brevibacterium sanguinis Gram+, aerobic rods soil 1 Yes 5 RLT, DSM 15677T DSM
Brevundimonas alba Gram-, rod, motile, aerobe soil 1 No
Brevundimonas aurantiaca Gram-, rod, motile, aerobe 1 Yes DSM 4731T HAM
Brevundimonas aveniformis Gram-, rod, motile, aerobe 1 No
Brevundimonas bacteroides Gram-, rod, motile, aerobe water 1 No
Brevundimonas basaltis Gram-, rod, motile, aerobe 1 No
Brevundimonas bullata Gram-, rod, motile, aerobe 1 No
Brevundimonas diminuta leaf-spot disease Gram-, rod, motile, aerobe plants 1 Yes 021_W20 NFI, DSM 7234T HAM, 900200844 LBK
Brevundimonas halotolerans Gram-, rod, motile, aerobe 1 No
Brevundimonas intermedia Gram-, rod, motile, aerobe water 1 Yes DSM 4732T HAM
Brevundimonas kwangchunensis Gram-, rod, motile, aerobe 1 No
Brevundimonas lenta Gram-, rod, motile, aerobe soil 1 No
Brevundimonas mediterranea Gram-, rod, motile, aerobe 1 No
Brevundimonas naejangsanensis Gram-, rod, motile, aerobe 1 No
Brevundimonas nasdae Gram-, rod, motile, aerobe 1 Yes DSM 14572T HAM
Brevundimonas poindexterae Gram-, rod, motile, aerobe 1 No
Brevundimonas sp Gram-, rod, motile, aerobe 1 Yes 097_NF18 NFI
Brevundimonas staleyi Gram-, rod, motile, aerobe 1 No
Brevundimonas subvibrioides Gram-, rod, motile, aerobe 1 Yes DSM 4735T HAM
Brevundimonas terrae Gram-, rod, motile, aerobe 1 No
Brevundimonas vancanneytii Gram-, rod, motile, aerobe blood 1 No
Brevundimonas variabilis Gram-, rod, motile, aerobe 1 No
Brevundimonas vesicularis septic arthritis in infants Gram-, rod, motile, aerobe blood 1 Yes DSM 7226T HAM
Brochothrix thermosphacta Yes DSM 20171T LGL
Budvicia aquatica Sepsis in immunocompromized patiens Gram-, Motile rods Water, feces 1 Yes DSM 5075T HAM
Bulleidia extructa Yes P10bue_li3AN USH, P10flue_li10AN USH
Burkholderia ambifaria Nonpathogenic Obligate aerobic, Gram- rods null 1 Yes DSM 16087T DSM, LMG 11351 HAM
Burkholderia andropogonis Nonpathogenic Obligate aerobic, Gram- rods Plants 1 Yes DSM 9511T HAM
Burkholderia anthina Nonpathogenic Obligate aerobic, Gram- rods null 1 Yes DSM 16086T DSM, LMG 16670 HAM
Burkholderia brasiliensis Nonpathogenic Obligate aerobic, Gram- rods null 1 No null null
Burkholderia caledonica Nonpathogenic Obligate aerobic, Gram- rods 1 Yes LMG 19076T HAM
Burkholderia caribiensis Nonpathogenic Obligate aerobic, Gram- rods null 1 Yes DSM 13236T HAM
Burkholderia caryophylli Nonpathogenic Obligate aerobic, Gram- rods Plants 1 No null null
Burkholderia cenocepacia Infects plants and opportunistic infections "cepacia syndrome" in patients with cystic fibrosis Obligate aerobic, Gram- rods Plants, respiratory tract 2 Yes LMG 12614 HAM, VA 40719_08 ERL
Burkholderia cepacia Pulmonary infections Obligate aerobic, Gram- rods soil samples, respiratory tract 2 Yes DSM 11737 DSM, DSM 50180 DSM, DSM 50181 DSM, DSM 9241 DSM, LMG 2161 HAM, MB_7544_05 THL, DSM 7288T DSM
Burkholderia cepacia_Group Obligate aerobic, Gram- rods 2 Yes 59 RLT, 18875_1 CHB
Burkholderia diffusa Obligate aerobic, Gram- rods 2 Yes DSM 23434T DSM
Burkholderia dolosa Pulmonary infections Obligate aerobic, Gram- rods soil samples, respiratory tract 2 Yes DSM 16088T DSM
Burkholderia fungorum Nonpathogenic Obligate aerobic, Gram- rods null 1 Yes LMG 20227T HAM
Burkholderia gladioli Pulmonary infections Obligate aerobic, Gram- rods Plants, environmental samples, respiratory tract 1 Yes Wv22575 CHB, BK1959 EVM, DSM 11318 DSM, DSM 4285T DSM, DSM 8361 DSM
Burkholderia glathei Nonpathogenic Obligate aerobic, Gram- rods Rice pathogen, soil samples 1 Yes DSM 50014T HAM
Burkholderia glumae Nonpathogenic Obligate aerobic, Gram- rods Rice pathogen, soil samples 1 Yes DSM 9512T HAM
Burkholderia graminis Nonpathogenic Obligate aerobic, Gram- rods Plants 1 No
Burkholderia hospita Nonpathogenic Obligate aerobic, Gram- rods 1 No
Burkholderia kururiensis Nonpathogenic Obligate aerobic, Gram- rods Soil samples 1 No
Burkholderia lata Obligate aerobic, Gram- rods Yes DSM 23089T DSM
Burkholderia latens Obligate aerobic, Gram- rods Yes DSM 23436T DSM
Burkholderia metallica Obligate aerobic, Gram- rods Yes DSM 23519T DSM
Burkholderia multivorans Pulmonary infections Obligate aerobic, Gram- rods soil samples, respiratory tract 2 Yes DSM 13243T DSM, LMG 14293 HAM, VA40721a_08 ERL, VA40721b_08 ERL, VA40328_07 ERL
Burkholderia oklahomensis null Obligate aerobic, Gram- rods null No null null
Burkholderia phenazinium Nonpathogenic Obligate aerobic, Gram- rods soil samples 1 Yes DSM 10684T HAM
Burkholderia phenoliruptrix Nonpathogenic Obligate aerobic, Gram- rods null 1 No null null
Burkholderia phymatum Nonpathogenic Obligate aerobic, Gram- rods Symbiotic with legumes, soil samples 1 Yes LMG 21445T HAM
Burkholderia phytofirmans Nonpathogenic Obligate aerobic, Gram- rods 1 No
Burkholderia plantarii Nonpathogenic Obligate aerobic, Gram- rods Soil samples 1 Yes DSM 9509T HAM
Burkholderia pyrrocinia Nonpathogenic Obligate aerobic, Gram- rods Soil samples 1 Yes LMG 14191T HAM, DSM 10685T DSM
Burkholderia sacchari Nonpathogenic Obligate aerobic, Gram- rods 1 Yes LMG 19450T HAM
Burkholderia seminalis Nonpathogenic Obligate aerobic, Gram- rods 1 Yes VA40474_09 ERL
Burkholderia singaporensis null Obligate aerobic, Gram- rods null No null null
Burkholderia sordidicola Nonpathogenic Obligate aerobic, Gram- rods null 1 No null null
Burkholderia stabilis Nonpathogenic Obligate aerobic, Gram- rods null 1 Yes LMG 14294T HAM, DSM 16586T DSM
Burkholderia terricola Nonpathogenic Obligate aerobic, Gram- rods 1 Yes LMG 20594T HAM
Burkholderia thailandensis Pulmonary infections Obligate aerobic, Gram- rods soil samples, respiratory tract 2 Yes DSM 13276T HAM
Burkholderia tropica Nonpathogenic Obligate aerobic, Gram- rods null 1 Yes DSM 15359T HAM
Burkholderia tuberum Nonpathogenic Obligate aerobic, Gram- rods Symbiotic with legumes, soil samples 1 Yes LMG 21444T HAM
Burkholderia ubonensis Nonpathogenic Obligate aerobic, Gram- rods 1 No
Burkholderia unamae Nonpathogenic Obligate aerobic, Gram- rods 1 No
Burkholderia vietnamiensis Pulmonary infections Obligate aerobic, Gram- rods soil samples, respiratory tract 2 Yes LMG 10929T HAM
Burkholderia xenoverans Nonpathogenic Obligate aerobic, Gram- rods Soil samples 1 Yes LMG 21463T HAM
Buttiauxella agrestis Gram-, small rods, motile, facultative anaerobic Soil/water 1 Yes DSM 4586T HAM
Buttiauxella brennerae Gram-, small rods, motile, facultative anaerobic Soil 1 Yes DSM 9396T HAM
Buttiauxella ferragutiae Gram-, small rods, motile, facultative anaerobic Soil 1 Yes DSM 9390T HAM
Buttiauxella gaviniae Gram-, small rods, motile, facultative anaerobic Soil 1 Yes DSM 9393T HAM
Buttiauxella izardii Gram-, small rods, motile, facultative anaerobic Soil 1 Yes DSM 9397T HAM
Buttiauxella noackiae Gram-, small rods, motile, facultative anaerobic Soil 1 Yes DSM 9401T HAM
Buttiauxella warmboldiae Gram-, small rods, motile, facultative anaerobic Soil 1 Yes DSM 9404T HAM
Butyricimonas synergistica Gram-, obligately anaerobic, non spore forming, non motile rods rat feces 1 No
Butyricimonas virosa Gram-, obligately anaerobic, non spore forming, non motile rods rat feces 1 Yes 144 RLT
Campylobacter avium Gram-, spiral, microaerophilic, motile and oxidase positive 2 Yes CCUG 56292T NVU
Campylobacter canadensis Gram-, spiral, microaerophilic, motile and oxidase positive 1 Yes CCUG 54429T NVU
Campylobacter coli campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cattle, swine and birds, food, feces 2 Yes 10090_03 NVU, 11167_03 NVU, CCUG 11283T NVU
Campylobacter coli ssp coli campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cattle, swine and birds, food, feces 2 Yes DSM 4689T FLI
Campylobacter concisus Gram-, spiral, microaerophilic, motile and oxidase positive mouth 2 Yes 2009_44055 CMA, 2010_112101_Fecal CMA, 2010_112101_Oral CMA, 2010_113332_Fecal CMA, 2010_113332_Oral CMA, 2010_115605_Fecal CMA, 2010_115605_Oral CMA, 2010_120841 CMA, DSM 9716T DSM, K4 CMA, LMG 7964 LMG, M2 CMA, P3flue_re1AN USH, P7flue_li1AN USH
Campylobacter cuniculorum Gram-, spiral, microaerophilic, motile and oxidase positive rabbits 2 No
Campylobacter curvus abscess in mouth Gram-, spiral, microaerophilic, motile and oxidase positive mouth 1 Yes DSM 6644T DSM, LMG 11033 LMG, LMG 11034 LMG, LMG 11247 LMG, LMG 13932 LMG
Campylobacter fetus ssp fetus Abortion in cattle nad sheep, opportunistic pathogen i humans, bacteremia and thrombophlebitis Gram-, spiral, microaerophilic, motile and oxidase positive Blood, respiratory tract 2 Yes CCUG 6823T NVU, DSM 5361T DSM, DSM 5361T FLI, RV412_A1_2010_02 LBK
Campylobacter fetus ssp venerealis Abortion in cattle nad sheep, opportunistic pathogen i humans, bacteremia and thrombophlebitis Gram-, spiral, microaerophilic, motile and oxidase positive Blood, respiratory tract 2 Yes CCUG 24260 NVU, CCUG 538T NVU, DSM 18826T DSM, NCTC 10354 FLI
Campylobacter gracilis Gram-, spiral, microaerophilic, motile and oxidase positive mouth 2 Yes CCUG 27720T NVU, DSM 19528T DSM
Campylobacter helveticus Gram-, spiral, microaerophilic, motile and oxidase positive cats 2 Yes 370_01 NVU, 8174_01 NVU, Blut 7986_08 NVU, CCUG 30682T NVU
Campylobacter hominis Gram-, spiral, microaerophilic, motile and oxidase positive feces 2 Yes CCUG 45161T NVU
Campylobacter hyointestinalis enteritis in swine Gram-, spiral, microaerophilic, motile and oxidase positive swine intestine 1 Yes CCUG 14169T NVU, F223 CPB, ZC27 NVU
Campylobacter hyointestinalis ssp hyointestinalis Gram-, spiral, microaerophilic, motile and oxidase positive swine intestine 1 No
Campylobacter hyointestinalis ssp lawsonii Gram-, spiral, microaerophilic, motile and oxidase positive swine intestine 1 No
Campylobacter insulaenigrae septecimia, enteritis in immunocompromized patients Gram-, spiral, microaerophilic, motile and oxidase positive marine mammals 2 No
Campylobacter jejuni campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cattle, swine and birds, food, feces 2 Yes ATCC 29428 THL, MB_4738_05 THL, Bkt 4391_08 NVU, MB_6111_05 THL, MB_7240_05 THL
Campylobacter jejuni ssp doylei campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cattle, swine and birds, food, feces 2 Yes A698 CPB, BRUG 374 CPB, C410 CPB, CCUG 24567T NVU, NCTC 11951_1 FLI
Campylobacter jejuni ssp jejuni campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cattle, swine and birds, food, feces 2 Yes DSM 4688T DSM
Campylobacter lanienae Gram-, spiral, microaerophilic, motile and oxidase positive cattle feces 2 Yes CCUG 44467T NVU
Campylobacter lari diarrhea Gram-, spiral, microaerophilic, motile and oxidase positive feces 1 Yes 227_99 NVU, 165_98 NVU, Cb 193_87 NVU
Campylobacter lari ssp concheus diarrhea Gram-, spiral, microaerophilic, motile and oxidase positive feces 1 No
Campylobacter lari ssp lari diarrhea Gram-, spiral, microaerophilic, motile and oxidase positive feces 1 Yes CCUG 23947T NVU, DSM 11375T DSM
Campylobacter mucosalis Gram-, spiral, microaerophilic, motile and oxidase positive swine intestine 2 No
Campylobacter peloridis Gram-, spiral, microaerophilic, motile and oxidase positive humans and molluscs 2 Yes BRUG 251 CPB
Campylobacter rectus Gram-, spiral, microaerophilic, motile and oxidase positive mouth 1 Yes DSM 3260T DSM
Campylobacter showae Gram-, spiral, microaerophilic, motile and oxidase positive mouth 2 Yes CCUG 30254T NVU, AN_P2_bue_re3 USH, P3bue_re11AN USH, VA4369_11 ERL
Campylobacter sputorum Gram-, spiral, microaerophilic, motile and oxidase positive animal feces, sperm, mouth 2 Yes DSM 5364 FLI, NCTC 11415 FLI, GD78 GDD
Campylobacter sputorum ssp bubulus Gram-, spiral, microaerophilic, motile and oxidase positive sheep feces, mouth 2 Yes DSM 5363 FLI
Campylobacter sputorum ssp sputorum Gram-, spiral, microaerophilic, motile and oxidase positive bull sperm, mouth 2 No
Campylobacter subantarcticus Gram-, spiral, microaerophilic, motile and oxidase positive 1 No
Campylobacter upsaliensis campylobacteriosis Gram-, spiral, microaerophilic, motile and oxidase positive cats and dogs 2 Yes 412_01 NVU, 451_01 NVU, Bkt 7522_08 NVU, CCUG 14913T NVU, DSM 5365T FLI
Campylobacter ureolyticus Gram-, spiral, microaerophilic, motile and oxidase positive 2 Yes 0807M22055902 bacil - IBS, 110324_29 PNU, 110324_95 PNU, 110324_96 PNU, VA20417_11 ERL
Campylobacter volucris Gram-, spiral, microaerophilic, motile and oxidase positive 2 No
Candida aaseri Yeast-like fungus 2 No
Candida alai Yeast Yes CBS 9899T CBS
Candida albicans Yeast-like fungus 2 Yes ATCC 10231 THL, ATCC 10231 VML, ATCC 90028 VML, DSM 11943 DSM, DSM 11945 DSM, DSM 11949 DSM, DSM 1577 DSM, DSM 1665 DSM, DSM 3454 DSM, DSM 5817 DSM, DSM 6569 DSM, DSM 6659 DSM, RV_D VML, VA_17248_07 04 UKE
Candida albicans_africana vaginal candidiasis Yeast-like fungus Vagina 2 Yes VML
Candida allociferrii Infections in immunocompromized patients Yeast-like fungus 2 Yes VML
Candida amapae Yeast-like fungus 2 No
Candida ambrosiae Yeast Yes CBS 8845 CBS
Candida anatomiae Yeast-like fungus 2 No
Candida ancudensis Yeast-like fungus 2 No
Candida antillancae Yeast-like fungus 2 No
Candida apicola Yeast-like fungus 2 No
Candida apis Yeast-like fungus 2 No
Candida atlantica Yeast-like fungus 2 No
Candida atmosphaerica Yeast-like fungus 2 No
Candida auringiensis Yeast-like fungus 2 No
Candida auris Yeast Yes CBS KCTC 17809 CBS, CBS KCTC 17810 CBS, DSM 21092T CBS
Candida austromarina Yeast-like fungus 2 No
Candida azyma Yeast-like fungus 2 No
Candida beechii Yeast-like fungus 2 No
Candida bertae Yeast-like fungus 2 No
Candida berthetii Yeast-like fungus 2 No
Candida blankii Yeast-like fungus 2 No
Candida blattae Yeast Yes CBS 9871T CBS
Candida bohiensis Yeast Yes CBS 9897T CBS
Candida boidinii Yeast-like fungus 2 Yes DSM 70024 DSM, DSM 70026T DSM, DSM 70033 DSM, DSM 70034 DSM, VML
Candida boleticola Yeast-like fungus 2 No
Candida bombi Yeast-like fungus 2 No
Candida bombicola Yeast-like fungus 2 No
Candida bracarensis Yeast Yes CBS 10154T CBS, RV1 MY 1 10 ERL
Candida buenavistaensis Yeast Yes CBS 9895T CBS
Candida buinensis Yeast-like fungus 2 No
Candida buturi Yeast-like fungus 2 No
Candida cantarellii Yeast-like fungus 2 No
Candida carpophila Yeast Yes CBS 5256 CBS, CBS 7921 CBS
Candida caseinolytica Yeast-like fungus 2 No
Candida castellii Yeast-like fungus 2 Yes CBS 4332T CBS
Candida castrensis Yeast-like fungus 2 No
Candida catenulata Yeast-like fungus 2 Yes 138 VML, 86 VML, DSM 70040 DSM, DSM 70136 DSM
Candida chilensis Yeast-like fungus 2 No
Candida chiropterum Yeast-like fungus 2 No
Candida chodatii (ana) Hyphopichia burtonii (teleo) Yeast-like fungus 2 Yes MY00872_06 ERL
Candida coipomoensis Yeast-like fungus 2 No
Candida conglobata Yeast-like fungus 2 No
Candida cylindracea Yeast-like fungus 2 Yes DSM 2031T DSM
Candida dubliniensis Yeast-like fungus 2 Yes 20 UKE, 99 PSB, RV_2_2006 VML
Candida duobushaemulonii 1 Yes CBS 6915 CBS, CBS 7798T CBS, CBS 7799 CBS, CBS 7800 CBS, CBS 9754 CBS, CBS CL 7829P CBS, MY916 09 ERL
Candida ernobii Yeast-like fungus 2 Yes DSM 70858T DSM
Candida freyschussii Yeast-like fungus 2 Yes DSM 70047 DSM
Candida friedrichii Yeast-like fungus 2 Yes DSM 70050T DSM
Candida frijolesensis Yeast Yes CBS 10377T CBS
Candida glabrata Yeast-like fungus 2 Yes 10035463_101 USH, 31 PSB, ATCC 2001T THL, ATCC 90030 VML, DSM 11950 DSM, DSM 6425 DSM, DSM 70615 DSM
Candida haemulonii Yeast-like fungus 2 Yes DSM 70624T DSM, VML
Candida inconspicua Yeast-like fungus 2 Yes DSM 70631 DSM
Candida infanticola Yeast Yes CBS 7922T CBS
Candida intermedia Yeast-like fungus 2 Yes DSM 70753 DSM, MY565_09 ERL
Candida labiduridarum Yeast Yes CBS 10452T CBS
Candida lactiscondensi Yeast-like fungus 2 Yes DSM 70635T DSM
Candida magnoliae Yeast-like fungus 2 Yes DSM 70638T DSM, DSM 70639 DSM
Candida maltosa Yeast-like fungus 2 Yes DSM 15531 DSM
Candida membranifaciens Yeast-like fungus 2 Yes DSM 70109 DSM, MY913_09 ERL
Candida mesenterica Yeast-like fungus 2 Yes DSM 70759 DSM, DSM 70015 DSM
Candida metapsilosis Yeast-like fungus 2 Yes P3120_8_37 HAC, P3121_8_37 HAC
Candida multigemmis Yeast-like fungus 2 Yes DSM 70862T DSM
Candida nemodendra Yeast-like fungus 2 Yes DSM 70647T DSM
Candida nitratophila Yeast-like fungus 2 Yes DSM 70649T DSM
Candida nivariensis Yeast-like fungus 2 Yes 10_MYK 1021 MHH
Candida nivariensis Yeast-like fungus 2 Yes RV490_Feb09_04 PSB
Candida norvegica Yeast-like fungus 2 Yes DSM 70863 DSM
Candida orthopsilosis Yeast-like fungus 2 Yes P3118_8_37 HAC, P3119_8_37 HAC, VML
Candida palmioleophila Yeast-like fungus 2 Yes 69 PIM, MY00850_07 ERL, MY938_07 ERL
Candida parapsilosis Yeast-like fungus 2 Yes 26 PSB, ATCC 22019 THL, DSM 11224 DSM, DSM 4237 DSM, DSM 5784T DSM, DSM 70125 DSM, DSM 70126 DSM, VML, MY924_09 ERL
Candida pararugosa Yeast-like fungus 2 Yes 33 PIM, MY_00389_09 ERL, VML
Candida peltata Yeast-like fungus 2 Yes DSM 70579T DSM
Candida pini Yeast-like fungus 2 Yes DSM 70653T DSM
Candida pseudohaemulonii Yeast Yes CBS 10004 CBS, CBS KCTC 17807 CBS, JCM 12453T CBS
Candida rugosa Yeast-like fungus 2 Yes 89 PSB
Candida saitoana Yeast Yes CBS 940T CBS
Candida sake Yeast-like fungus 2 Yes DSM 70763 DSM
Candida shehatae var insectosa Yeast Yes CBS 4286 CBS
Candida sojae Yeast Yes MY333MA 11 ERL, MY333STR 11 ERL
Candida solani Yeast-like fungus 2 Yes DSM 3315 DSM
Candida spandovensis Yeast-like fungus 2 Yes DSM 70866T DSM
Candida succiphila Yeast-like fungus 2 Yes DSM 2149T DSM
Candida tropicalis Yeast-like fungus 2 Yes ATCC 13803 THL, DSM 1346 DSM, DSM 4238 DSM, DSM 5991 DSM, DSM 70151 DSM, DSM 7524 DSM, DSM 9419 DSM, RV_03 VML, VML
Candida versatilis Yeast-like fungus 2 Yes DSM 6956T DSM
Candida vini Yeast-like fungus 2 Yes DSM 70184 DSM
Candida viswanathii Yeast Yes CBS 1924 CBS, CBS 4024T CBS, RV5 MY 1 11 ERL
Candida zeylanoides Yeast-like fungus 2 Yes DSM 70185 DSM, VML
Candidatus Reyranella massiliensis Yeast-like fungus freshwater 2 Yes 125_21 RLT, 181_20 RLT, 3B26_22 RLT
Candida_cacaoi[ana]# (Pichia_farinosa[teleo]) Yeast-like fungus 2 Yes DSM 2226T DSM, VML
Candida_ciferrii[ana] (Stephanoascus_ciferrii[teleo]#) Yeast-like fungus 2 Yes DSM 70749 DSM, RV07_02 17 VML
Candida_citrea[ana] (Pichia_nakasei[teleo]#) Yeast Yes CBS 5141T CBS
Candida_colliculosa[ana] (Torulaspora_delbrueckii[teleo]#) Yeast-like fungus 2 Yes 901400020 LBK, 901400023 LBK, VML
Candida_fabianii[ana] (Pichia_fabianii[teleo]) Yeast Yes CBS 5481T CBS, CBS 5482 CBS, CBS 5640 CBS, CBS 5650 CBS, CBS 6212 CBSMY00875_10 ERL, MY1019_10 ERL, RV5_MY_1_10 ERL
Candida_guilliermondii[ana] (Pichia_guilliermondii[teleo]#) Yeast-like fungus 2 Yes CBS 566 CBS, DSM 11947 DSM, RV490_Feb09_02 PSB, VML, MY970_1_09 ERL
Candida_guilliermondii_var_membranaefaciens[ana] (Pichia_ohmeri[teleo]#) Yeast-like fungus 2 Yes DSM 70813 DSM, DSM 70815 DSM
Candida_holmii[ana] (Kazachstania_exigua[teleo]) Yeast Yes CBS 135NT CBS
Candida_kefyr[ana] (Kluyveromyces_marxianus[teleo]#) Yeast-like fungus 2 Yes DSM 70073 DSM, DSM 70106 DSM
Candida_kefyr[ana] (Kluyveromyces_marxianus_ssp_marxianus[teleo]#) Yeast-like fungus 2 Yes CBS 834 CBS
Candida_kefyr[ana]# (Kluyveromyces_marxianus[teleo]) Yeast-like fungus 2 Yes 41 PSB, VML
Candida_krusei[ana] (Issatchenkia_orientalis[teleo]#) Yeast-like fungus 2 Yes DSM 11956 DSM, DSM 6128 DSM, DSM 70075 DSM, DSM 70079 DSM, 36 PSB
Candida_krusei[ana]# (Issatchenkia_orientalis[teleo]) Yeast-like fungus 2 Yes ATCC 14243 THL, ATCC 6258 THL, ATCC 6258 VML, RV491_Sep09_D LBK
Candida_lambica[ana] (Pichia_fermentans[teleo]#) Yeast-like fungus 2 Yes DSM 70090 DSM, DSM 70095 DSM
Candida_lambica[ana] (Pichia_fermentans_ssp_fermentans[teleo]#) Yeast-like fungus 2 Yes CBS 603 CBS
Candida_lambica[ana]# (Pichia_fermentans[teleo]) Yeast-like fungus 2 Yes RV490_Oct09_02 LBK, MY568_09 ERL
Candida_lipolytica[ana] (Yarrowia_lipolytica[teleo]#) Yeast-like fungus 2 Yes DSM 1345 DSM, DSM 3286 DSM, DSM 70561 DSM, DSM 70562 DSM, DSM 8218 DSM, VML
Candida_lusitaniae[ana] (Clavispora_lusitaniae[teleo]#) Yeast-like fungus 2 Yes 45 PSB, 51 PIM, CBS 4413T CBS, VML, DSM 70102 DSM
Candida_norvegensis[ana] (Pichia_norvegensis[teleo]#) Yeast-like fungus 2 Yes 87 PSB, 98 PSB, 993800278 LBK, DSM 70760 DSM, RV_3_2006 VML, MY140_10 ERL
Candida_pelliculosa[ana] (Pichia_anomala[teleo]#) Yeast-like fungus 2 Yes DSM 70130 DSM, DSM 70260 DSM, MY_00164_09 ERL
Candida_pintolopseii[ana] (Kazachstania_pintolopesii[teleo]) Yeast Yes CBS 2985T CBS, CBS 3045 CBS
Candida_pulcherrima[ana] (Metschnikowia_pulcherrima[teleo]#) Yeast-like fungus 2 Yes CBS 2244 PAH, DSM 70336 DSM, VML
Candida_reukaufii[ana] (Metschnikowia_reukaufii[teleo]#) Yeast-like fungus 2 Yes DSM 70880 VML
Candida_slooffiae[ana]# (Kazachstania_slooffiae[teleo]) Yeast-like fungus 2 Yes 01 VML
Candida_sorbosa[ana] (Issatchenkia_occidentalis[teleo]#) Yeast-like fungus 2 Yes CBS 1910 CBS
Candida_sphaerica[ana] (Kluyveromyces_lactis[teleo]#) Yeast-like fungus 2 Yes 900400310 LBK, 70 PIM, MY166_10 ERL
Candida_thermophila[ana]# (Ogataea_thermophila[teleo]) Yeast-like fungus 2 Yes VML
Candida_utilis[ana]# (Pichia_jandinii[teleo]) Yeast-like fungus 2 Yes DSM 2361 DSM, DSM 70163 DSM, DSM 70167 DSM
Candida_valida[ana] (Pichia_membranifaciens[teleo]#) Yeast-like fungus 2 Yes 10 LBK
Candida_valida[ana] (Pichia_membranifaciens[teleo]#) Yeast-like fungus 2 Yes 901400022 LBK, DSM 70169 DSM, DSM 70179 DSM
Capnocytophaga canimorsus Infections from dog bites, septicemia Gram-, filamentous rods, facultative aerobe blood, oral cavity of dogs 2 Yes DSM 19204T DSM
Capnocytophaga cynodegmi Infections from dog bites, septicemia Gram-, filamentous rods, facultative aerobe oral cavity of dogs 2 Yes DSM 19736T DSM
Capnocytophaga gingivalis Gram-, filamentous rods, facultative aerobe oral cavity 2 Yes DSM 3290T DSM, 110706_D9 LUMC, 1V12049207_3e MVD, P4bue_re6AN USH, P4flue_re3AN USH, P8flue_re3AN USH
Capnocytophaga granulosa dental plaque Gram-, filamentous rods, facultative aerobe oral cavity 2 Yes DSM 11449T DSM, P3bue_li10AN USH
Capnocytophaga haemolytica dental plaque Gram-, filamentous rods, facultative aerobe oral cavity 2 Yes DSM 11385T DSM
Capnocytophaga leadbetteri Gram-, filamentous rods, facultative aerobe 2 No
Capnocytophaga ochracea Gram-, filamentous rods, facultative aerobe oral cavity 2 Yes DSM 7271T DSM, DSM 7272 DSM
Capnocytophaga sp Gram-, filamentous rods, facultative aerobe 2 Yes G18141 IBS, 110706_F4 LUMC
Capnocytophaga sputigena Gram-, filamentous rods, facultative aerobe oral cavity 2 Yes DSM 7273T DSM, RV412_A2_09_05 LBK, 110706_E4 LUMC, 110706_E5 LUMC, 110706_F6 LUMC
Cardiobacterium hominis endocarditis gram-, rod highly pleomorphic and irregularly staining blood, respiratory tract 2 Yes DSM 8339T DSM
Cardiobacterium sp. endocarditis gram-, rod highly pleomorphic and irregularly staining blood, respiratory tract 2 Yes H42036_3 CHOA
Cardiobacterium valvarum endocarditis gram-, rod highly pleomorphic and irregularly staining blood, respiratory tract 2 Yes DSM 17211T DSM
Carnobacterium alterfunditum Gram+, anaerobe rods meat 1 No
Carnobacterium divergens Gram+, anaerobe rods meat 1 No
Carnobacterium funditum Gram+, anaerobe rods meat 1 No
Carnobacterium gallinarum Gram+, anaerobe rods meat 1 No
Carnobacterium inhibens Gram+, anaerobe rods meat 1 No
Carnobacterium joetgali Gram+, anaerobe rods meat 1 No
Carnobacterium maltaromaticum fish pathogen Gram+, anaerobe rods milk 1 Yes DSM 20342T DSM, CIP 102035 CIP, M23 101342 CIP
Carnobacterium mobile Gram+, anaerobe rods meat 1 No
Carnobacterium pleistocenium Gram+, anaerobe rods meat 1 No
Carnobacterium viridans Gram+, anaerobe rods meat 1 No
Castellaniella caeni Gram-, facultatively anaerobic, rods No
Castellaniella daejeonensis Gram-, facultatively anaerobic, rods No
Castellaniella defragrans Gram-, facultatively anaerobic, rods Yes DSM 12141T DSM, DSM 12141T HAM, DSM 12142 DSM, DSM 12143 DSM, DSM 12144 DSM
Castellaniella denitrificans Gram-, facultatively anaerobic, rods No
Castellaniella ginsengisoli Gram-, facultatively anaerobic, rods No
Caulobacter fusiformis Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter ginsengisoli Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter henricii Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter leidyi Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter mirabilis Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter segnis Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 No
Caulobacter sp Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 Yes %5B2%5D 101220_44166 BRB
Caulobacter vibrioides Gram-, rod-like, heterotrophic aerobe, asymmetrically dividing Water 1 Yes LB_101494_09 ERL
Cedecea davisae Opportunistic infections Gram-, rods, motile, non spore forming sputum, blood, skin wounds, gall bladder, urine and lung tissue 2 Yes DSM 4568T HAM
Cedecea lapagei Opportunistic infections Gram-, rods, motile, non spore forming sputum, blood, skin wounds, gall bladder, urine and lung tissue 2 Yes DSM 4587T HAM
Cedecea neteri Opportunistic infections Gram-, rods, motile, non spore forming sputum, blood, skin wounds, gall bladder, urine and lung tissue 2 Yes DSM 13693T HAM
Cellulomonas aerilata Gram+, rods soil 1 No
Cellulomonas biazotea Gram+, rods soil 1 No
Cellulomonas bogoriensis Gram+, rods No
Cellulomonas chitinilytica Gram+, rods No
Cellulomonas composti Gram+, rods soil 1 No
Cellulomonas denverensis Gram+, rods blood 2 No
Cellulomonas fimi Gram+, rods soil 1 Yes DSM 20114 DSM
Cellulomonas flavigena Gram+, rods 1 Yes B194 UFL
Cellulomonas gelida Gram+, rods soil 1 Yes IMET 11078 HKJ
Cellulomonas hominis Gram+, rods cerebrospinal fluid 2 No
Cellulomonas humilata Gram+, rods soil 2 No
Cellulomonas iranensis Gram+, rods soil 1 No
Cellulomonas persica Gram+, rods soil 1 No
Cellulomonas phragmiteti Gram+, rods No
Cellulomonas terrae Gram+, rods soil 1 No
Cellulomonas uda Gram+, rods soil 1 Yes HKI 11495 HKJ
Cellulomonas xylanilytica Gram+, rods soil 1 No
Cellulosimicrobium cellulans Yes B480 UFL, DSM 20155 DSM
Cellulosimicrobium funkei No
Cellulosimicrobium terreum No
Chaetomium atrobrunneum Infections in immunocompromized patients Fungus soil, plant debris, air 1 No
Chaetomium funicola Fungus soil, plant debris, air 1 No
Chaetomium globosum Brain abscess, peritonitis, onychomycosis Fungus soil, plant debris, air 1 Yes RVD_08I VML
Chaetomium murorum Fungus soil, plant debris, air 1 No
Chlamydia muridarum Obligate intracellular, Gram- mice, hamsters 2 No
Chlamydia suis Conjunctivitis, enteritis and pneumonia in swine Obligate intracellular, Gram- swine 2 No
Chlamydophila aboruts Abortion and fetal death Obligate intracellular, Gram- Fetuses 2 No
Chlamydophila caviae Conjunctiva of guinea pigs Obligate intracellular, Gram- eye discharge 2 No
Chlamydophila felis Feline pneumonia Obligate intracellular, Gram- Lung of feline, human lungs 2 No
Chlamydophila pecorum Abortion, conjunctivitis, pneumonia Obligate intracellular, Gram- cattle, sheep, koalas and swine 2 No
Chlamydophila pneumoniae Pneumonia Obligate intracellular, Gram- Lungs 2 No null null null
Chromobacterium aquaticum Gram- rods No
Chromobacterium haemolyticum Gram- rods No
Chromobacterium piscinae Gram- rods No
Chromobacterium pseudoviolaceum Gram- rods No
Chromobacterium subtsugae Gram- rods Yes DSM 17043T DSM
Chromobacterium violaceum Gram- rods Yes C49 MVO, DSM 30191T DSM
Chromohalobacter beijerimckii Gram-, rod-like motile No
Chromohalobacter canadensis Gram-, rod-like motile No
Chromohalobacter israelensis Gram-, rod-like motile No
Chromohalobacter japonicus Gram-, rod-like motile No
Chromohalobacter marismortui Gram-, rod-like motile No
Chromohalobacter nigrandesensis Gram-, rod-like motile No
Chromohalobacter salexigens Gram-, rod-like motile Yes B570 UFL
Chromohalobacter sarecensis Gram-, rod-like motile No
Chryptotrichosporon anacardii Yeast Yes CBS 9551T CBS, CBS 9550 CBS
Chryseobacterium antarcticum Gram- bacilli. No
Chryseobacterium anthropi Gram- bacilli. No
Chryseobacterium aquaticum Gram- bacilli. No
Chryseobacterium aquifrigidense Gram- bacilli. No
Chryseobacterium arthrosphaerae Gram- bacilli. No
Chryseobacterium balustinum Gram- bacilli. No
Chryseobacterium bovis Gram- bacilli. No
Chryseobacterium caeni Gram- bacilli. No
Chryseobacterium chaponense Gram- bacilli. No
Chryseobacterium culicis Gram- bacilli. No
Chryseobacterium daecheongense Gram- bacilli. No
Chryseobacterium daeguense Gram- bacilli. No
Chryseobacterium defluvii Gram- bacilli. No
Chryseobacterium elymi Gram- bacilli. No
Chryseobacterium flavum Gram- bacilli. No
Chryseobacterium formosense Gram- bacilli. No
Chryseobacterium gambrini Gram- bacilli. No
Chryseobacterium ginsenosidimutans Gram- bacilli. Yes CIP 110378 CIP
Chryseobacterium gleum Gram- bacilli. No H42703 CHOA, T25198_2 CHOA
Chryseobacterium greenlandense Gram- bacilli. No
Chryseobacterium gregarium Gram- bacilli. No
Chryseobacterium hagamense Gram- bacilli. Yes CIP 110400 CIP
Chryseobacterium haifense Gram- bacilli. No
Chryseobacterium hispanicum Gram- bacilli. No
Chryseobacterium homins Gram- bacilli. Yes 456 RLT
Chryseobacterium humi Gram- bacilli. No
Chryseobacterium hungaricum Gram- bacilli. No
Chryseobacterium indologenes Gram- bacilli. Yes 098_NEB37 NFI, CCM 4451T CCM
Chryseobacterium indoltheticum Gram- bacilli. No
Chryseobacterium jejuense Gram- bacilli. No
Chryseobacterium jeonii Gram- bacilli. No
Chryseobacterium joostei Gram- bacilli. Yes LMG 18212T HAM
Chryseobacterium koreense Gram- bacilli. No
Chryseobacterium lathyri Gram- bacilli. No
Chryseobacterium luteum Gram- bacilli. No
Chryseobacterium marinum Gram- bacilli. No
Chryseobacterium molle Gram- bacilli. No
Chryseobacterium oncorhynchi Gram- bacilli. No
Chryseobacterium oranimense Gram- bacilli. Yes 901900074 LBK
Chryseobacterium pallidum Gram- bacilli. No
Chryseobacterium palustre Gram- bacilli. No
Chryseobacterium piperi Gram- bacilli. No
Chryseobacterium piscicola Gram- bacilli. No
Chryseobacterium piscium Gram- bacilli. No
Chryseobacterium rhizosphaerae Gram- bacilli. No
Chryseobacterium scophthalmum Gram- bacilli. Yes LMG 13028T HAM
Chryseobacterium shigense Gram- bacilli. No
Chryseobacterium soldanellicola Gram- bacilli. No
Chryseobacterium soli Gram- bacilli. No
Chryseobacterium solincola Gram- bacilli. No
Chryseobacterium sp Gram- bacilli. Yes 107 PIM
Chryseobacterium taeanense Gram- bacilli. No
Chryseobacterium taichungense Gram- bacilli. No
Chryseobacterium taiwanense Gram- bacilli. No
Chryseobacterium treverense Gram- bacilli. No
Chryseobacterium ureilyticum Gram- bacilli. No
Chryseobacterium vietnamense Gram- bacilli. No
Chryseobacterium vrystaatense Gram- bacilli. No
Chryseobacterium wanjuense Gram- bacilli. No
Chryseobacterium xinjiangense Gram- bacilli. No
Chryseobacterium yonginense Gram- bacilli. No
Citrobacter amalonaticus Yes DSM 4593T HAM, CCM 4706 CCM
Citrobacter braakii Yes 20663_2 CHB, 9314_2 CHB
Citrobacter farmeri Yes DSM 17655T HAM
Citrobacter freundii Yes DSM 30039T HAM, DSM 15979 DSM, 22054_1 CHB, 13158_2 CHB
Citrobacter gillenii Yes DSM 13694T HAM
Citrobacter koseri Yes Mu15167_1 CHB, MB_8260_05 THL, DSM 4596 DSM, DSM 4595T HAM, DSM 4570 DSM, 9553_1 CHB
Citrobacter murliniae Yes DSM 13695T HAM
Citrobacter rodentium Yes DSM 16636T HAM
Citrobacter sedlakii Yes IBS_MS_10 IBS, DSM 17674T HAM
Citrobacter werkamnii No
Citrobacter youngae gram-negative Enterobacteriaceae water, soil, food, and the intestinal tracts of animals and humans. Yes DSM 17578T HAM
Clavibacter michiganensis No
Clavibacter michiganensis ssp insidiosus No
Clavibacter michiganensis ssp michiganensis No
Clavibacter michiganensis ssp nebraskensis No
Clavibacter michiganensis ssp sepedonicus No
Clavibacter michiganensis ssp tessellarius Yes DSM 20741T DSM
Clostridium aceticum Gram+, strictly anaerobic, endospore producing, rods Mud 1 No
Clostridium acetireducens Gram+, strictly anaerobic, endospore producing, rods No
Clostridium acetobutylicum Gram+, strictly anaerobic, endospore producing, rods Plants 1 Yes DSM 792T VML, DSM 1731 DSM, DSM 1737 DSM, DSM 1738 DSM
Clostridium acidisoli Gram+, strictly anaerobic, endospore producing, rods soil 1 No
Clostridium aciditolerans Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 17425T DSM
Clostridium acidurici Gram+, strictly anaerobic, endospore producing, rods soil 1 No
Clostridium aerotolerans Gram+, strictly anaerobic, endospore producing, rods sheep 1 Yes DSM 5434T DSM
Clostridium aestuarii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium akagii Gram+, strictly anaerobic, endospore producing, rods soil 1 No
Clostridium alcalibutyricum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium alcaliphilum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium aldrichii Gram+, strictly anaerobic, endospore producing, rods Yes DSM 19262T DSM
Clostridium algidicarnis Gram+, strictly anaerobic, endospore producing, rods Yes DSM 15099T DSM
Clostridium algidixylanolyticum Gram+, strictly anaerobic, endospore producing, rods spoiled lamb meat 1 Yes DSM 12273T DSM
Clostridium algoriphilum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium alkalicellulosi Gram+, strictly anaerobic, endospore producing, rods No
Clostridium aminobutyricum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium aminophilum Gram+, strictly anaerobic, endospore producing, rods cattle 1 Yes DSM 10710T DSM
Clostridium aminovalericum Gram+, strictly anaerobic, endospore producing, rods Soil, sludge 1 No
Clostridium amygdalinum Gram+, strictly anaerobic, endospore producing, rods sludge 1 No
Clostridium amylolyticum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium arbusti Gram+, strictly anaerobic, endospore producing, rods No
Clostridium arcticum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium argentinense Gram+, strictly anaerobic, endospore producing, rods No
Clostridium asparagiforme Gram+, strictly anaerobic, endospore producing, rods No
Clostridium aurantibutyricum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium autoethanogenum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium baratii Botulism Gram+, strictly anaerobic, endospore producing, rods Yes 1018_NCTC 10986 BOG, 1084_ATCC 25782 BOG
Clostridium bartlettii Gram+, strictly anaerobic, endospore producing, rods Yes DSM 16795T DSM
Clostridium beijerinckii Gram+, strictly anaerobic, endospore producing, rods 1 Yes 1011_DSM 552 BOG, 1072_ATCC 25752T BOG
Clostridium bifermentans Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 630 DSM, 2274_CCUG 35556 A BOG, 2273_CCUG 35297 BOG, 1027_NCTC 1341 BOG, AB_2 LGL
Clostridium bogorii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium boliviensis Gram+, strictly anaerobic, endospore producing, rods No
Clostridium bolteae Gram+, strictly anaerobic, endospore producing, rods feces 2 Yes DSM 15670T DSM
Clostridium botulinum Botulism Gram+, strictly anaerobic, endospore producing, rods 2 Yes G 2270_Spanien 4615_BOG, G 1073_ATCC 27322_BOG, A 2295_ NewZealand 35ka29_BOG, A 2292_NewZealand 4997_BOG, A 2276_Schweden 7735_BOG, A 2267_Spanien 551_BOG, A 1028_NCTC 7272_BOG, B 2293_NewZealand 75-3074_BOG, B 2269 Spanien 4610_BOG, B 1740_CMM 27_2_BOG, B 1029_NCTC 7273_BOG, C2_2256_Holland A028_BOG, C1_2257_Holland 468C_BOG, C 2294_NewZealand 5295_BOG, C 2145_Erfurt REB 1455_BOG, C 1030_NCTC 8264_BOG, D 2142_Pasteur 1873-D_BOG, D 1739_ATCC 9633_BOG, D 1031_NCTC 8265_BOG, E 2271_Spanien 4611_BOG, E 1032_NCTC 8266_BOG, F 2297_NewZealand 83-4304_BOG, F 2272_Spanien 4612_BOG, F 1033_NCTC 10281_BOG
Clostridium bovipellis Gram+, strictly anaerobic, endospore producing, rods No
Clostridium bowmanii Gram+, strictly anaerobic, endospore producing, rods antarctic freshwater lake mud 1 No
Clostridium butyricum Botulism Gram+, strictly anaerobic, endospore producing, rods Sheep, blood 1 Yes DSM 2478 DSM, DSM 10702T DSM, 900200369 LBK, 21951 RLH
Clostridium cadaveris Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 1284T DSM, 1074_ATCC 25783T BOG
Clostridium caenicola Gram+, strictly anaerobic, endospore producing, rods No
Clostridium caminithermale Gram+, strictly anaerobic, endospore producing, rods No
Clostridium carboxidivorans Gram+, strictly anaerobic, endospore producing, rods soil 1 Yes DSM 15243T DSM
Clostridium carnis Gram+, strictly anaerobic, endospore producing, rods Meat 2 Yes DSM 1293T DSM
Clostridium cavendishii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium celatum Gram+, strictly anaerobic, endospore producing, rods feces 1 No
Clostridium celerecrescens Gram+, strictly anaerobic, endospore producing, rods Yes DSM 5628T DSM, 52 PIM
Clostridium cellobioparum Gram+, strictly anaerobic, endospore producing, rods cattle 1 Yes DSM 1351T DSM
Clostridium cellulofermentans Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium cellulolyticum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium cellulosi Gram+, strictly anaerobic, endospore producing, rods No
Clostridium cellulovorans Gram+, strictly anaerobic, endospore producing, rods No
Clostridium chartatabidum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium chauvoei Gram+, strictly anaerobic, endospore producing, rods Sheep, Cattle 2 Yes 1023_NCTC 8070 BOG, 1024_NCTC 8596 BOG, 1076_ATCC 10092T BOG
Clostridium chromiireducens Gram+, strictly anaerobic, endospore producing, rods No
Clostridium citroniae Gram+, strictly anaerobic, endospore producing, rods peritoneal fluid 2 Yes DSM 19261T DSM
Clostridium clariflavum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium clostridioforme Opportunistic infections Gram-, strictly anaerobic, endospore producing, rods Cattle, feces 1 Yes DSM 933T DSM, 1021_NCTC 11224T BOG, 110706_G8 LUMC
Clostridium cochlearium Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 2153 VML, DSM 666 VML, 1077_ATCC 17787T BOG, 1050_NCTC 2909 BOG, DSM 1285T VML, 1080_ATCC 17794T BOG
Clostridium colicanis Gram+, strictly anaerobic, endospore producing, rods Yes DSM 13634T VML
Clostridium colinum Ulcerative colitis in chicken Gram+, strictly anaerobic, endospore producing, rods Chicken 1 Yes DSM 6011T DSM
Clostridium collagenovorans Gram+, strictly anaerobic, endospore producing, rods sludge 1 Yes DSM 3089T DSM
Clostridium cylindrosporum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium difficile Antibiotic associated diarreha, pseudomembranous colitis Gram+, strictly anaerobic, endospore producing, rods feces 2 Yes 0422_0288_DM IBS, 1020_NCTC 11206 BOG, DSM 12057 DSM, DSM 1296T DSM, MB_1562_05 THL, MB_2559_05 THL, MB_294_05 THL, MB_4499_05 THL, MB_7476_05 THL, MB_7869_05 THL
Clostridium diolis Gram+, strictly anaerobic, endospore producing, rods plants 1 Yes DSM 15410T DSM
Clostridium disporicum Gram+, strictly anaerobic, endospore producing, rods rat colon, rat feces 1 Yes DSM 5521T DSM
Clostridium drakei Gram+, strictly anaerobic, endospore producing, rods sediments 1 Yes DSM 12750T DSM
Clostridium estertheticum ssp. estertheticum Gram+, strictly anaerobic, endospore producing, rods beef meat 1 No
Clostridium estertheticum ssp. laramiense Gram+, strictly anaerobic, endospore producing, rods spoiled meat 1 No
Clostridium fallax Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 2631T DSM
Clostridium felsineum Gram+, strictly anaerobic, endospore producing, rods Soil 1 No
Clostridium filamentosum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium fimetarium Gram+, strictly anaerobic, endospore producing, rods No
Clostridium formicaceticum Gram+, strictly anaerobic, endospore producing, rods Mud 1 Yes DSM 92T DSM
Clostridium frigidicarnis Gram+, strictly anaerobic, endospore producing, rods raw beef meat 1 No
Clostridium frigoris Gram+, strictly anaerobic, endospore producing, rods antarctic freshwater lake mud 1 Yes DSM 14204T DSM
Clostridium ganghwense Gram+, strictly anaerobic, endospore producing, rods No
Clostridium gasigenes Gram+, strictly anaerobic, endospore producing, rods No
Clostridium ghonii Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 15049T DSM
Clostridium glycolicum Gram+, strictly anaerobic, endospore producing, rods Soil 1 Yes 203246 RLH, DSM 13561 DSM, 100617_23 PNU, 100617_52 PNU
Clostridium glycyrrhizinilyticum Gram+, strictly anaerobic, endospore producing, rods Yes DSM 17593T DSM
Clostridium grantii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium haemolyticum Gram+, strictly anaerobic, endospore producing, rods Yes 1069_ATCC 9650T BOG
Clostridium halophilum Gram+, strictly anaerobic, endospore producing, rods Soil 1 Yes DSM 5387T DSM
Clostridium hathewayi Gram+, strictly anaerobic, endospore producing, rods Yes DSM 13479T DSM, DSM 13480 DSM, HU52042 PNU, 15_759 IBS
Clostridium herbivorans Gram+, strictly anaerobic, endospore producing, rods No
Clostridium hiranonis Gram+, strictly anaerobic, endospore producing, rods Yes DSM 13275T DSM
Clostridium histolyticum Gas gangrene Gram+, strictly anaerobic, endospore producing, rods Gangrene tissue 2 Yes 1036_NCTC 503T BOG, DSM 1126 DSM, DSM 2158T DSM
Clostridium homopropionicum Gram+, strictly anaerobic, endospore producing, rods sludge 1 Yes DSM 5847T DSM
Clostridium hungatei Gram+, strictly anaerobic, endospore producing, rods soil 1 No
Clostridium hydrogeniformans Gram+, strictly anaerobic, endospore producing, rods No
Clostridium hylemonae Gram+, strictly anaerobic, endospore producing, rods Yes DSM 15053T DSM
Clostridium indolis Gram+, strictly anaerobic, endospore producing, rods Soil 1 Yes DSM 755T DSM
Clostridium innocuum Opportunistic infections Gram+, strictly anaerobic, endospore producing, rods Abscess 1 Yes 1079_ATCC 14501T BOG, 25_389 IBS, DSM 1286T DSM, HU46588 PNU, HU56448 PNU
Clostridium intestinale Gram+, strictly anaerobic, endospore producing, rods feces 1 Yes DSM 16614 DSM, DSM 6191T DSM
Clostridium irregulare Gram+, strictly anaerobic, endospore producing, rods 1 Yes DSM 2635T VML
Clostridium isatidis Gram+, strictly anaerobic, endospore producing, rods Yes DSM 15098T_1 VML
Clostridium jejuense Gram+, strictly anaerobic, endospore producing, rods Yes DSM 15929T DSM
Clostridium josui Gram+, strictly anaerobic, endospore producing, rods No
Clostridium kluyveri Gram+, strictly anaerobic, endospore producing, rods No
Clostridium lactatifermentans Gram+, strictly anaerobic, endospore producing, rods Yes DSM 14214T DSM
Clostridium lacusfryxellense Gram+, strictly anaerobic, endospore producing, rods antarctic freshwater lake mud 1 No
Clostridium lavalense Gram+, strictly anaerobic, endospore producing, rods No
Clostridium lentocellum Gram+, strictly anaerobic, endospore producing, rods Feces 1 Yes DSM 5427T DSM
Clostridium leptum Gram+, strictly anaerobic, endospore producing, rods Feces 1 No
Clostridium limosum Gram+, strictly anaerobic, endospore producing, rods Mud 1 Yes DSM 1400T DSM
Clostridium litorale Gram+, strictly anaerobic, endospore producing, rods marine sediments 1 No
Clostridium lituseburense Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium ljungdahlii Gram+, strictly anaerobic, endospore producing, rods water well 1 No
Clostridium lundense Gram+, strictly anaerobic, endospore producing, rods Yes DSM 17049T VML
Clostridium magnum Gram+, strictly anaerobic, endospore producing, rods freshwater sediments 1 Yes DSM 13769 DSM
Clostridium malenominatum Subgingival plaque Gram+, strictly anaerobic, endospore producing, rods Mouth 1 Yes DSM 1127T DSM
Clostridium mangenotii Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium mayombei Gram+, strictly anaerobic, endospore producing, rods termite gut 1 Yes DSM 6539T DSM
Clostridium methoxybenzovorans Gram+, strictly anaerobic, endospore producing, rods soil 1 No
Clostridium methylpentosum Gram+, strictly anaerobic, endospore producing, rods feces 1 No
Clostridium neopropionicum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium nexile Gram+, strictly anaerobic, endospore producing, rods Feces 1 No
Clostridium nitrophenolicum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium novyi Gas gangrene Gram+, strictly anaerobic, endospore producing, rods Gangrene tissue 2 Yes 1082_ATCC 17861T BOG, A 1025_NCTC 538 BOG
Clostridium oceanicum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium oroticum Gram+, strictly anaerobic, endospore producing, rods Soil 1 No
Clostridium papyrosolvens Gram+, strictly anaerobic, endospore producing, rods mud 1 Yes DSM 2782T DSM
Clostridium paradoxum Gram+, strictly anaerobic, endospore producing, rods sludge 1 No
Clostridium paraputrificum Gram+, strictly anaerobic, endospore producing, rods Mud 1 Yes 1083_ATCC 17796 BOG, DSM 2630T DSM, DSM 46280 DSM, 110706_B3 LUMC, AB_8 LGL
Clostridium pascui Gram+, strictly anaerobic, endospore producing, rods No
Clostridium pasteurianum Gram+, strictly anaerobic, endospore producing, rods Plants 1 No
Clostridium peptidivorans Gram+, strictly anaerobic, endospore producing, rods No
Clostridium perfringens Soft tissue infections, food poisoning, enteritis, necroticans, septicemia Gram+, strictly anaerobic, endospore producing, rods Blood, feces 2 Yes DSM 11778_3d VML, DSM 11781 VML, DSM 11784 VML, DSM 628 VML, DSM 756T VML, DSM 798 VML, HU51221 PNU, HU65618 PNU, RV_BA_03_D LBK
Clostridium phytofermentans Gram+, strictly anaerobic, endospore producing, rods soil 1 Yes DSM 18823T DSM
Clostridium polysaccharolyticum Gram+, strictly anaerobic, endospore producing, rods Sheep 1 No
Clostridium populeti Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium propionicum Gram+, strictly anaerobic, endospore producing, rods Mud 1 Yes DSM 1682T DSM, DSM 6251 DSM
Clostridium proteolyticum Gram+, strictly anaerobic, endospore producing, rods chicken manure 1 No
Clostridium psychrophilum Gram+, strictly anaerobic, endospore producing, rods antarctic freshwater lake mud 1 No
Clostridium puniceum Gram+, strictly anaerobic, endospore producing, rods rotting potatoes, soil 1 No
Clostridium purinilyticum Gram+, strictly anaerobic, endospore producing, rods Soil 1 No
Clostridium putrefaciens Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium putrificum Gram+, strictly anaerobic, endospore producing, rods 1 Yes CIP_60.54 DSM
Clostridium quinii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium ramosum Opportunistic infections Gram-, strictly anaerobic, endospore producing, rods Soil, wounds 1 Yes 02_491 IBS, 02_491 N2 IBS, 15_758 IBS, 49 RLT, 94 PIM, DSM 1402T VML, IBS_MS_15 IBS, 470 RLT
Clostridium rectum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium roseum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium saccharobutylicum Gram+, strictly anaerobic, endospore producing, rods soybeans 1 Yes DSM 13864T DSM
Clostridium saccharogumia Gram+, strictly anaerobic, endospore producing, rods Yes DSM 17460T DSM
Clostridium saccharolyticum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium saccharoperbutylacetonicum Gram+, strictly anaerobic, endospore producing, rods Soil 1 No
Clostridium sardiniense Gram+, strictly anaerobic, endospore producing, rods Soil 2 Yes 1001_NCTC 10984T BOG, DSM 600 DSM
Clostridium sartagoforme Gram+, strictly anaerobic, endospore producing, rods 1 Yes 100617_58 PNU, DSM 17125 DSM
Clostridium scatologenes Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium schirmacherense Gram+, strictly anaerobic, endospore producing, rods Yes DSM 17394T VML
Clostridium scindens Gram+, strictly anaerobic, endospore producing, rods Feces 1 Yes 15 RLT, DSM 5676T DSM
Clostridium septicum gas gangrene, septicemia Gram+, strictly anaerobic, endospore producing, rods Blood 2 Yes 1026_NCTC 547T BOG, DSM 7534T_1 VML, GD77 GDD
Clostridium sordellii Gas gangrene, septic shock syndrome Gram+, strictly anaerobic, endospore producing, rods blood,gangrene tissue 2 Yes 1070_ATCC 9714T BOG, DSM 2141T VML
Clostridium sp Gram+, strictly anaerobic, endospore producing, rods Yes DSM 1975 VML, 110324_103 PNU, 110324_14 PNU, 110324_53 PNU, DSM 13576 DSM, DSM 17592T DSM, DSM 5906 DSM
Clostridium sphenoides Gram+, strictly anaerobic, endospore producing, rods 1 Yes 1046_NCTC 507T BOG, DSM 1225 VML, DSM 614 VML, DSM 632T VML
Clostridium spiroforme Gram+, strictly anaerobic, endospore producing, rods Feces 1 Yes 1047_NCTC 11211T BOG
Clostridium sporogenes Opportunistic infections Gram+, strictly anaerobic, endospore producing, rods Wounds, soil 1 Yes 992800235 LBK, DSM 1734 VML, DSM 46278 VML, DSM 46279 VML, DSM 633 VML, DSM 795T VML
Clostridium sporosphaeroides Gram+, strictly anaerobic, endospore producing, rods Wounds, soil 1 Yes DSM 1294T VML
Clostridium sp[2] Gram+, strictly anaerobic, endospore producing, rods Yes 0807M290672 IBS
Clostridium stercorarium ssp. leptospartum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium stercorarium ssp. stercorarium Gram+, strictly anaerobic, endospore producing, rods Compost 1 No
Clostridium stercorarium ssp. thermolacticum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium sticklandii Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium straminisolvens Gram+, strictly anaerobic, endospore producing, rods No
Clostridium subterminale Gram+, strictly anaerobic, endospore producing, rods sludge 1 Yes DSM 2636 VML, DSM 6970T DSM, DSM 758 VML
Clostridium sufflavum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium sulfidigenes Gram+, strictly anaerobic, endospore producing, rods soil, sediments 1 No
Clostridium symbiosum Gram+, strictly anaerobic, endospore producing, rods Soil 1 Yes DSM 934T DSM
Clostridium tagluense Gram+, strictly anaerobic, endospore producing, rods No
Clostridium tepidiprofundi Gram+, strictly anaerobic, endospore producing, rods No
Clostridium termitidis Gram+, strictly anaerobic, endospore producing, rods termite gut 1 No
Clostridium tertium Opportunistic infections Gram+, strictly anaerobic, endospore producing, rods Soil 1 Yes 1048_NCTC 541 BOG, 900500287 LBK, DSM 2485T VML, DSM 662 VML, HU46926 PNU, VA10735_10 ERL
Clostridium tetani tetanus Gram+, strictly anaerobic, endospore producing, rods Feces 2 Yes 1089_ATCC 10779 BOG, DSM 11744 VML, DSM 11745 VML
Clostridium tetani type 1 Gram+, strictly anaerobic, endospore producing, rods Feces 2 Yes 1049_NCTC 279T BOG
Clostridium tetanomorphum Gram+, strictly anaerobic, endospore producing, rods saliva 1 No
Clostridium thermoalcaliphilum Gram+, strictly anaerobic, endospore producing, rods sludge 1 No
Clostridium thermobutyricum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium thermocellum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium thermopalmarium Gram+, strictly anaerobic, endospore producing, rods palm wine 1 Yes DSM 5974T DSM
Clostridium thermopapyrolyticum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium thermosuccinogenes Gram+, strictly anaerobic, endospore producing, rods No
Clostridium thiosulfatireducens Gram+, strictly anaerobic, endospore producing, rods No
Clostridium tunisiense Gram+, strictly anaerobic, endospore producing, rods Yes DSM 15206T DSM
Clostridium tyrobutyricum Gram+, strictly anaerobic, endospore producing, rods 1 No
Clostridium uliginosum Gram+, strictly anaerobic, endospore producing, rods No
Clostridium ultunense Gram+, strictly anaerobic, endospore producing, rods biogas reactor 1 No
Clostridium vincentii Gram+, strictly anaerobic, endospore producing, rods No
Clostridium viride Gram+, strictly anaerobic, endospore producing, rods sludge 1 No
Clostridium xylanovorans Gram+, strictly anaerobic, endospore producing, rods plants 1 Yes DSM 12503T DSM
Cohnella arctica No
Cohnella damuensis No
Cohnella fontinalis Yes QBR_3884 QBC
Cohnella ginsengisoli No
Cohnella hongkongensis Yes DSM 17642T DSM
Cohnella laeviribosi No
Cohnella luojiensis No
Cohnella panacarvi No
Cohnella phaseoli No
Cohnella soli No
Cohnella suwonensis No
Cohnella terrae No
Cohnella thailandensis No
Cohnella thermotolerans No
Cohnella xylanilytica No
Cohnella yongneupensis No
Colletotrichum gloeosporioides Infects plants fungus Yes CBS 100471 CBS
Collinsella aerofaciens Yes DSM 13712 DSM, DSM 3979T DSM
Collinsella intestinalis No
Collinsella stercoris No
Collinsella tanakaei No
Comamonas aquatica Yes LMG 2370T HAM
Comamonas badia No
Comamonas composti No
Comamonas denitrificans No
Comamonas granuli No
Comamonas kerstersii Yes DSM 16026T HAM
Comamonas koreensis No
Comamonas nitrativorans Yes DSM 13191T HAM
Comamonas odontotermitis No
Comamonas terrigena Yes DSM 7099T HAM
Comamonas testosteroni Yes DSM 50244T HAM, B337 UFL
Comamonas thiooxydans No
Comamonas zonglianii No
Coprobaccilus cateniformis Yes 776012 RLH
Corynebacterium accolens Yes DSM 44278T DSM, 87_D5_coll ISB, x_x_28779_H IBS, 8 RLT
Corynebacterium afermentans ssp afermentans Yes 78_D4_coll ISB, DSM 44280T DSM, 74_D4_coll ISB, 73_D4_coll ISB, 72_D4_coll ISB
Corynebacterium afermentans ssp lipophilum Yes DSM 44282T DSM
Corynebacterium ammoniagenes Yes IMET 11243T HKJ, DSM 20306T DSM
Corynebacterium amycolatum Yes IBS_MS_3 IBS, IBS_MS_16 IBS, 128_x_A5608_63 IBS, PX_25086111 MLD, DSM 6922T DSM, 100_28_B77962_42 IBS
Corynebacterium appendicis Yes DSM 44531T DSM
Corynebacterium aquilae Yes DSM 44791T DSM
Corynebacterium argentoratense Yes DSM 44202T DSM, 111_19_B2155_53 IBS, 249 RLT
Corynebacterium atypicum No
Corynebacterium aurimucosum Yes DSM 44827 DSM, DSM 44532T DSM, 993900021 LBK, 991800383 LBK, 25 PIM
Corynebacterium auris Yes DSM 44122T DSM
Corynebacterium auriscanis Yes DSM 44609T DSM
Corynebacterium beticola No
Corynebacterium bovis Yes DSM 20582T DSM, GD10 GDD
Corynebacterium callunae Yes DSM 20147T DSM
Corynebacterium camporealensis Yes DSM 44610T DSM
Corynebacterium canis No
Corynebacterium capitovis Yes DSM 44611T DSM
Corynebacterium casei Yes DSM 44701T DSM
Corynebacterium caspium No
Corynebacterium ciconiae Yes DSM 44920T DSM
Corynebacterium confusum Yes DSM 44384T DSM, 287 RLT
Corynebacterium coyleae Yes DSM 44184T DSM, 153 RLT
Corynebacterium cystitidis Yes DSM 20524T DSM
Corynebacterium deserti No
Corynebacterium diphtheriae Diphteria (respiratory and cutaneous) Aerobic or facultatively anaerobic gram+ rods Mucosal surfaces, skin samples 2 Yes 1G12072319_3e MVD, DSM 44123T DSM 2
Corynebacterium diphtheriae ssp belfanti 2 Yes 44_R9 ISB
Corynebacterium diphtheriae ssp gravis 2 Yes 50_R5 ISB
Corynebacterium diphtheriae ssp mitis 2 Yes R1_36_29 ISB
Corynebacterium doosanense No
Corynebacterium durum Yes C16 MVO, DSM 44351 DSM
Corynebacterium efficiens Yes DSM 44549T DSM
Corynebacterium falsenii Yes DSM 44353T DSM
Corynebacterium felinum Yes DSM 44508T DSM
Corynebacterium flavescens Yes IMET 11080T HKJ, DSM 20296T DSM, HKI 11080T HKJ
Corynebacterium freiburgense No
Corynebacterium freneyi Yes DSM 44506T DSM
Corynebacterium glaucum Yes DSM 44530T DSM, BK03351_07 ERL
Corynebacterium glucuronolyticum Yes 4_B2825 ISB, 1_B12915 ISB, DSM 44120T DSM, DSM 44288 DSM
Corynebacterium glutamicum Yes IMET 10482T HKJ, DSM 20300T DSM, GD11 GDD, DSM 20301 DSM 2, DSM 20137 DSM 2
Corynebacterium halotolerans Yes DSM 44683T DSM
Corynebacterium hansenii Yes DSM 45109T DSM
Corynebacterium hoagii No
Corynebacterium humireducens No
Corynebacterium ilicis No
Corynebacterium imitans Yes DSM 44264T DSM
Corynebacterium jeikeium Septicemia, endocarditis, wound infections, foreign body infections Aerobic or facultatively anaerobic gram+ rods Blood samples, wound swab 2 Yes 27_B30049 ISB, VA_3882_07_13 UKE, DSM 7171T DSM, B73970 ISB, 32_T98977 ISB, 30_CIP 103337T ISB, 118 RLT
Corynebacterium kroppenstedtii Yes VA_3882_07_13 UKE, DSM 7171T DSM, B73970 ISB, 32_T98977 ISB, 30_CIP 103337T ISB
Corynebacterium kutscheri Yes DSM 20755T DSM
Corynebacterium lipophile Yes grpe F1 115_D5coll_5311_66 IBS
Corynebacterium lipophiloflavum Yes DSM 44291T DSM
Corynebacterium lubricantis No
Corynebacterium macginleyi Yes DSM 44284T DSM, 120_D5coll_104099_71 IBS
Corynebacterium marinum No
Corynebacterium maris No
Corynebacterium massiliense No
Corynebacterium mastitidis Yes DSM 44356T DSM, DSM 44355 DSM, DSM 44354 DSM
Corynebacterium matruchotii Yes DSM 20635T DSM
Corynebacterium minutissimum Yes x_x_10288_E IBS, DSM 20651T DSM, 99_25_CCUG 27045_41 IBS, 104_25_CCUG 36888_46 IBS, BK03540_09 ERL, VA14954_09 ERL
Corynebacterium mucifaciens Yes DSM 44265T DSM, CS 31_5 BRB, C19 MVO, BK03357_08 ERL, Cory_40 IBS, CS 678_4 BRB
Corynebacterium mustelae No
Corynebacterium mycetoides Yes DSM 20632T DSM
Corynebacterium nuruki No
Corynebacterium phocae Yes DSM 44612T DSM
Corynebacterium pilbarense No
Corynebacterium pilosum Yes DSM 20521T DSM
Corynebacterium propinquum Yes 80_D4_coll ISB, 83_D4_coll ISB, 168 RLT, DSM 44285T DSM 2
Corynebacterium pseudodiphtheriticum Yes MB_7369_05 THL, DSM 46628 DSM, ATCC 10701 THL, 10036853_101 USH, DSM 44287T DSM 2
Corynebacterium pseudotuberculosis Yes 64_D6_coll ISB, 62_D6_coll ISB, DSM 20689T DSM, x_x_102968_C IBS, 59_D6_coll ISB, GD7 GDD, GD8 GDD
Corynebacterium pyruviciproducens No
Corynebacterium renale Yes DSM 20688T DSM, GD12 GDD, GD87 GDD
Corynebacterium resistens Yes DSM 45100T DSM
Corynebacterium riegelii Yes DSM 44326T DSM
Corynebacterium simulans Yes DSM 44415T DSM
Corynebacterium singulare Yes DSM 44357T DSM
Corynebacterium sp Yes DSM 44792T DSM, 901400365 LBK, 901600604 LBK, DSM 6688 DSM, DSM 44792T DSM, 294 RLT, GD14 GDD
Corynebacterium sphenisci Yes DSM 44792T DSM
Corynebacterium spheniscorum Yes DSM 44757T DSM
Corynebacterium sputi No
Corynebacterium stationis Yes DSM 20302T DSM
Corynebacterium striatum Yes PX_21086308 MLD, MB_8820_05 THL, DSM 20668T DSM, 23086514 MLD, 12_B25690 ISB, 10_G1799 ISB, 143 RLT
Corynebacterium suicordis Yes DSM 45110T DSM
Corynebacterium sundsvallense Yes DSM 44613T DSM, LB151024_11 ERL
Corynebacterium terpenotabidum Yes DSM 44721T DSM
Corynebacterium testudinoris Yes DSM 44614T DSM
Corynebacterium thomssenii Yes DSM 44276T DSM
Corynebacterium tuberculostearicum Yes Isolat Bre07 HED, DSM 44922T DSM, CS 678_3 BRB
Corynebacterium tuscaniense Yes DSM 45101T DSM
Corynebacterium ulcerans Yes 66_D6_coll ISB, 67_D6_coll ISB, 71_D6_coll ISB, DSM 46325T DSM, VA22435_07 ERL
Corynebacterium ulceribovis No
Corynebacterium urealyticum Urinary tract infections, septicimia, endocarditis, wound infections Aerobic or facultatively anaerobic gram+ rods Blood samples, urine samples, wound swab 2 Yes x_x_43042_J IBS, DSM 7111 DSM, DSM 7110 DSM, DSM 7109T DSM, 25_A25651 ISB, 24_A8761 ISB, 20_CU47 ISB
Corynebacterium ureicelerivorans Yes DSM 45051T DSM
Corynebacterium variabile Yes DSM 44702 DSM, DSM 20132T DSM
Corynebacterium vitaeruminis Yes DSM 20294T DSM
Corynebacterium xerosis Yes DSM 20743T DSM
Cronobacter dublinensis No
Cronobacter dublinensis ssp. dublinensis No
Cronobacter dublinensis ssp. lactaridi No
Cronobacter dublinensis ssp. lausannensis No
Cronobacter malonaticus No
Cronobacter muytjensii No
Cronobacter sakazakii Yes DSM 4485T DSM, CCM 3479 CCM, CCM 3461 CCM, CCM 3460 CCM, CCM 1902 CCM
Cronobacter turicensis No
Cryptococcus albidosimilis Yeast Yes CBS 10184 CBS, CBS 8626 CBS
Cryptococcus curvatus Yeast Yes CBS 5163 CBS, CBS 570T CBS
Cryptococcus diffluens Yeast Yes CBS 10266 CBS, CBS 160T CBS, CBS 926 CBS
Cryptococcus flavescens Yeast Yes CBS 6474 CBS, CBS 8645 CBS
Cryptococcus flavus Yeast (Fungus) 2 Yes DSM 70227T DSM
Cryptococcus gastricus Yeast Yes CBS 2288T CBS, CBS 7016 CBS
Cryptococcus humicola Yeast Yes CBS 2041 CBS, CBS 571T CBS
Cryptococcus laurentii Yeast (Fungus) 2 Yes VML
Cryptococcus liquefaciens Yeast Yes CBS 968T CBS
Cryptococcus macerans Yeast (Fungus) 2 Yes DSM 70822T DSM
Cryptococcus magnus Yeast Yes CBS 140T CBS, CBS 4685 CBS, CBS 8361 CBS
Cryptococcus neoformans Yeast (Fungus) 2 Yes ATCC 14116 THL, CCM 8312 CCM, RV07_02 18 VML, 29 PSB
Cryptococcus saitoi Yeast Yes CBS 1734 CBS, CBS 1975T CBS, CBS 5106 CBS
Cryptococcus terreus Yeast Yes DSM 70222 DSM
Cryptococcus uzbekistanensis Yeast Yes CBS 8683T CBS, CBS 5737 CBS
Cryptococcus vishniacii Yeast Yes CBS 8142 CBS, CBS 8100 CBS, CBS 7110T CBS
Cryptococcus vishniacii var vishniacii Yeast Yes CBS 7158 CBS
Cryptococcus_albidus[ana]# Filobasidium_floriforme[teleo]) Yeast (Fungus) 2 Yes DSM 70197 PAH
Cryptococcus_gattii[ana]# (Filobasidiella_bacillispora[teleo]) Yeast (Fungus) 2 Yes RV490_Oct09_01 LBK, RV490_Sep09_1 SLT
Cryptococcus_uniguttulatus[ana] (Filobasidium_uniguttulatum[teleo]#) Yeast (Fungus) 2 Yes DSM 4652 DSM, DSM 70225 DSM, H051_08 ERL
Cupriavidus basilensis Aerobic or facultatively anaerobic gram- rods No
Cupriavidus campinensis Aerobic or facultatively anaerobic gram- rods Yes DSM 17293T DSM
Cupriavidus gilardii Infections, sepsis Aerobic or facultatively anaerobic gram- rods cerebrospinal fluid, blood 2 Yes DSM 17292T DSM, UR5273_09 ERL
Cupriavidus laharis Aerobic or facultatively anaerobic gram- rods No
Cupriavidus metallidurans Aerobic or facultatively anaerobic gram- rods Yes DSM 2839T DSM
Cupriavidus necator Nonpathogenic Aerobic or facultatively anaerobic gram- rods Soil samples 1 Yes DSM 428 DSM, DSM 531 HAM, B238 UFL, B619 UFL, B479 UFL, B480 UFL, B394 UFL
Cupriavidus oxalaticus Aerobic or facultatively anaerobic gram- rods Yes DSM 428 DSM, DSM 531 HAM, B238 UFL, B619 UFL
Cupriavidus pampae Aerobic or facultatively anaerobic gram- rods No
Cupriavidus pauculus Aerobic or facultatively anaerobic gram- rods Yes VA_31954_09 ERL, UR01767_08 ERL, RV_00001_09 ERL, RV 412_0209_1 LBK, DSM 17313T DSM
Cupriavidus pinatubonensis Aerobic or facultatively anaerobic gram- rods No
Cupriavidus respiraculi Aerobic or facultatively anaerobic gram- rods Yes DSM 17358T DSM, BK1724 EVM
Cupriavidus sp. [1] Yes VA15406_09 ERL
Cupriavidus taiwanensis Aerobic or facultatively anaerobic gram- rods No
Curtobacterium albidum Yes HKI 11500 HKJ Synonym Brevibacterium albidum
Curtobacterium ammoniigenes No
Curtobacterium citreum No
Curtobacterium flaccumfaciens pvar poinsettiae Yes DSM 20149 DSM
Curtobacterium ginsengisoli No
Curtobacterium herbarum No
Curtobacterium luteum Yes P_3183_1 IMK, HKI 10360 HKJ
Curtobacterium plantarum No
Curtobacterium pusillum No
Curtobacterium sp Yes 68 PIM
Cyberlindnera mississippiensis Yeast Yes CBS 7027 CBS, CBS 7026 CBS, CBS 7025 CBS, CBS 7024 CBS, CBS 7023 CBS
Debaryomyces etchellsii Fungus Yes CBS 2011T VML, CBS 5603 VML
Debaryomyces hansenii Fungus Yes 991300257 LBK, DSM 70590 DSM, MY105_10 ERL
Deinococcus aerius Gram+ resistant to gamma and UV radiation No
Deinococcus aerolatus Gram+ resistant to gamma and UV radiation No
Deinococcus aerophilus Gram+ resistant to gamma and UV radiation No
Deinococcus aetherius Gram+ resistant to gamma and UV radiation No
Deinococcus alpinitundrae Gram+ resistant to gamma and UV radiation No
Deinococcus altitudinis Gram+ resistant to gamma and UV radiation No
Deinococcus apachensis Gram+ resistant to gamma and UV radiation No
Deinococcus aquaticus Gram+ resistant to gamma and UV radiation No
Deinococcus aquatilis Gram+ resistant to gamma and UV radiation No
Deinococcus aquiradiocola Gram+ resistant to gamma and UV radiation No
Deinococcus caeni Gram+ resistant to gamma and UV radiation No
Deinococcus cellulosilyticus Gram+ resistant to gamma and UV radiation No
Deinococcus claudionis Gram+ resistant to gamma and UV radiation No
Deinococcus daejeonensis Gram+ resistant to gamma and UV radiation No
Deinococcus depolymerans Gram+ resistant to gamma and UV radiation No
Deinococcus deserti Gram+ resistant to gamma and UV radiation No
Deinococcus ficus Gram+ resistant to gamma and UV radiation No
Deinococcus frigens Gram+ resistant to gamma and UV radiation No
Deinococcus geothermalis Gram+ resistant to gamma and UV radiation Yes DSM 11302 DSM, DSM 11301 DSM, DSM 11300T DSM
Deinococcus gobiensis Gram+ resistant to gamma and UV radiation No
Deinococcus grandis Gram+ resistant to gamma and UV radiation No
Deinococcus hohokamensis Gram+ resistant to gamma and UV radiation No
Deinococcus hopiensis Gram+ resistant to gamma and UV radiation No
Deinococcus humi Gram+ resistant to gamma and UV radiation No
Deinococcus indicus Gram+ resistant to gamma and UV radiation No
Deinococcus maricopensis Gram+ resistant to gamma and UV radiation No
Deinococcus marmoris Gram+ resistant to gamma and UV radiation No
Deinococcus misasensis Gram+ resistant to gamma and UV radiation No
Deinococcus murrayi Gram+ resistant to gamma and UV radiation No
Deinococcus navajonensis Gram+ resistant to gamma and UV radiation No
Deinococcus papagonensis Gram+ resistant to gamma and UV radiation No
Deinococcus peraridilitoris Gram+ resistant to gamma and UV radiation No
Deinococcus pimensis Gram+ resistant to gamma and UV radiation No
Deinococcus piscis Gram+ resistant to gamma and UV radiation No
Deinococcus proteolyticus Gram+ resistant to gamma and UV radiation No
Deinococcus radiodurans Gram+ resistant to gamma and UV radiation No
Deinococcus radiomollis Gram+ resistant to gamma and UV radiation No
Deinococcus radiophilus Gram+ resistant to gamma and UV radiation No
Deinococcus radiopugnans Gram+ resistant to gamma and UV radiation No
Deinococcus reticulitermitis Gram+ resistant to gamma and UV radiation No
Deinococcus roseus Gram+ resistant to gamma and UV radiation No
Deinococcus saxicola Gram+ resistant to gamma and UV radiation No
Deinococcus sonorensis Gram+ resistant to gamma and UV radiation No
Deinococcus wulumuqiensis Gram+ resistant to gamma and UV radiation No
Deinococcus xibeiensis Gram+ resistant to gamma and UV radiation No
Deinococcus xinjiangensis Gram+ resistant to gamma and UV radiation No
Deinococcus yavapaiensis Gram+ resistant to gamma and UV radiation No
Deinococcus yunweiensis Gram+ resistant to gamma and UV radiation No
Delftia acidovorans Gram-, non-spore-forming aerobe rods Yes 034_W13 NFI, CCM 2410 CCM, CCM 283 CCM, DSM 39T HAM
Delftia lacustris Gram-, non-spore-forming aerobe rods No
Delftia sp Gram-, non-spore-forming aerobe rods Yes 911600013 LBK
Delftia tsuruhatensis Gram-, non-spore-forming aerobe rods No
Dermabacter hominis Yes 122_x_T29453_64 IBS, 126_x_B25504_60 IBS, DSM 7083T DSM, 452 RLT
Dermacoccus abyssi No
Dermacoccus barathri No
Dermacoccus nishinomiyaensis Yes DSM 20448T DSM
Dermacoccus profundi No
Dermatophilus congolensis Yes DSM 43037 DSM, DSM 44172 DSM, DSM 44174 DSM, DSM 44173 DSM, DSM 44180T DSM
Devosia albogilva No
Devosia chinhatensis No
Devosia crocina No
Devosia geojensis No
Devosia glacialis No
Devosia insulae No
Devosia limi No
Devosia neptuniae No
Devosia psychrophila No
Devosia riboflavina Yes CIP 59_10T CIP, DSM 7230T DSM
Devosia soli No
Devosia subaequoris No
Devosia yakushimensis No
Dialister invisus No
Dialister micraerophilus Yes 08_001 N3 IBS
Dialister pneumosintes Yes VA12065_2_11 ERL
Dialister propionicifaciens No
Dialister succinatiphilus No
Dichelobacter nodosus Yes DSM 20708 DSM
Dickeya chrysanthemi Yes DSM 4610T HAM
Dickeya dadantii Yes DSM 18020T HAM
Dickeya dadantii ssp dieffenbachiae Yes DSM 18013T HAM
Dickeya dianthicola Yes DSM 18054T HAM
Dickeya paradisiaca Yes DSM 18069T HAM
Dickeya zeae Yes DSM 18068T HAM
Dietzia aerolata No
Dietzia alimentaria No
Dietzia aurantiaca No
Dietzia cercidiphylli No
Dietzia cinnamea Yes 117 RLT
Dietzia kunjamensis No
Dietzia lutea No
Dietzia maris Yes B491 UFL, DSM 43672T DSM
Dietzia natronolimnaea Yes 091216_01 LSM, 091216_02 LSM, DSM 44198 DSM
Dietzia papillomatosis No
Dietzia psychralcaliphila No
Dietzia schimae No
Dietzia timorensis No
Dysgonomonas capnocytophagoides No
Dysgonomonas gadei Yes F_8814_1 IMK
Dysgonomonas hofstadii No
Dysgonomonas mossii No
Edwardsiella hoshinae Yes DSM 13771T HAM
Edwardsiella ictaluri Yes CECT 885T EGS, DSM 13697T HAM
Edwardsiella tarda Yes ATCC 35_1 EGS, ATCC 36_1 EGS, CECT 849T EGS, DSM 30052T HAM, HL23_1 EGS, NCIMB EGS
Eggerthella lenta Yes 0807M25073601 IBS, 9 RLT, 17 RLT, DSM 15644 DSM, DSM 2243T DSM, LA10142401 LZR
Eggerthella sinensis No
Eggerthia catenaformis Yes 07_085 ANA IBS, CIP 104817T B CIP, IBS_MS_39 IBS, VA12065_1_11 ERL Synonym Eggerthia catenaformis
Eikenella corrodens Yes 26002_1b LSM, DSM 8340T DSM
Elizabethkingia anophelis No
Elizabethkingia meningoseptica Yes DSM 2800T HAM, CCM 2719T CCM, 002_NEB14 NFI
Elizabethkingia miricola Yes DSM 14571T HAM
Emericella nidulans (teleo) Asperillus nidulans (ana) Fungus Yes VML
Empedobacter brevis Yes LMG 4011T HAM, VA_00481_09 ERL
Engyodontium parvisporum Fungus Environment 1 No IHEM 22910 HKU
Engyodontium rectidentatum Fungus Environment 1 No CBS 206.74 HKU, CBS 547.82 HKU, CBS 641.74 HKU
Enterobacter aerogenes Yes 15282_1 CHB, ATCC 13048T THL, DSM 30053T HAM
Enterobacter amnigenus Yes DSM 30055 DSM, DSM 4486T DSM
Enterobacter arachidis No
Enterobacter asburiae Yes CCM 4032 CCM, CCM 4032 CCM, DSM 17506T DSM, RV412_A1_2010_05 LBK
Enterobacter cancerogenus Yes DSM 17580T DSM
Enterobacter cloacae Yes 13159_1 CHB, 20105_2 CHB, DSM 30060 DSM, DSM 30062 DSM, DSM 3264 DSM, DSM 46348 DSM, DSM 6234 DSM, MB11506_1 CHB, MB_8779_05 THL, MB_5277_05 THL
Enterobacter cloacae ssp cloacae Yes DSM 30054T HAM
Enterobacter cloacae ssp dissolvens Yes DSM 16657T HAM
Enterobacter cowanii Yes DSM 18146T DSM renamed as Kosakonia cowanii
Enterobacter gergoviae Yes CCM 3459 CCM, CCM 3475 CCM, DSM 9245T HAM
Enterobacter helveticus No
Enterobacter hormaechei ssp hormaechei Yes DSM 12409T DSM
Enterobacter kobei Yes DSM 13645T DSM
Enterobacter ludwigii Yes DSM 16688T DSM
Enterobacter mori No
Enterobacter nimipressuralis No
Enterobacter oryzae No
Enterobacter pulveris No
Enterobacter pyrinus Yes DSM 12410T DSM, DSM 12410T HAM
Enterobacter radicincitans Yes DSM 16656T DSM renamed as Kosakonia radicincitans
Enterobacter soli No
Enterobacter turicensis No
Enterococcus aquimarinus Yes DSM 17690T JUG
Enterococcus asini Yes DSM 11492T JUG
Enterococcus avium Yes 96 PIM, 125 RLT, DSM 20063 DSM, DSM 20679T JUG
Enterococcus caccae Yes DSM 19114T JUG
Enterococcus camelliae No
Enterococcus canintestini Yes DSM 21207T JUG, P_3828_1 IMK
Enterococcus canis Yes DSM 17029T JUG
Enterococcus casseliflavus Yes DSM 20382 DSM, DSM 20680T DSM, DSM 4841 DSM, DSM 7370 DSM, DSM 7371 DSM, DSM 7372 DSM
Enterococcus cecorum Yes DSM 20682T JUG, DSM 20683 DSM, GD1 GDD, GD2 GDD
Enterococcus columbae Yes DSM 7374T DSM
Enterococcus devriesei Yes DSM 22802T JUG
Enterococcus dispar Yes DSM 6630T JUG
Enterococcus durans Yes DSM 20633T DSM
Enterococcus faecalis Bacteremia, intraabdominal abscess, urinary tract infection, endocarditis Aerobic or facultatively anaerobic Gram+ cocci Blood samples, urine samples, feces samples 2 Yes 20247_4 CHB, ATCC 29212 CHB, ATCC 7080 THL, DSM 20371 DSM, DSM 20409 DSM, DSM 20478T JUG, DSM 2570 DSM, DSM 6134 DSM
Enterococcus faecium Bacteremia, intraabdominal abscess, urinary tract infection, endocarditis Aerobic or facultatively anaerobic Gram+ cocci Blood samples, urine samples, feces samples 2 Yes 11037 CHB, 20218_1 CHB, DSM 13589 DSM, DSM 17050 DSM, DSM 2146 DSM, DSM 2918 DSM, DSM 6177 DSM, PX_21086109_III MLD, VRE_PX_16086218 MLD
Enterococcus gallinarum Yes DSM 20717 DSM, DSM 20628T JUG, DSM 20718 DSM
Enterococcus gilvus Yes DSM 15689T JUG
Enterococcus haemoperoxidus Yes DSM 15920T JUG
Enterococcus hermanniensis Yes DSM 17122T JUG
Enterococcus hirae Yes DSM 20160T DSM, 139 RLT, DSM 3320 DSM, IBS_MS_18 IBS
Enterococcus italicus Yes DSM 15952T JUG
Enterococcus malodoratus Yes DSM 20681T DSM, VA_20209_09 ERL
Enterococcus moraviensis Yes DSM 15919T JUG
Enterococcus mundtii Yes DSM 4838T DSM, DSM 4839 DSM, DSM 4840 DSM
Enterococcus pallens Yes DSM 15690T JUG
Enterococcus phoeniculicola Yes DSM 14726T JUG
Enterococcus pseudoavium Yes DSM 5632T DSM
Enterococcus raffinosus Yes DSM 5633T DSM, BK1847 EVM
Enterococcus ratti Yes DSM 15687T JUG
Enterococcus saccharolyticus Yes DSM 20726T JUG
Enterococcus silesiacus Yes DSM 22801T JUG
Enterococcus sulfureus Yes DSM 6905T JUG
Enterococcus termitis Yes DSM 22803T JUG
Enterococcus thailandicus Yes DSM 21767T JUG
Enterococcus viikkiensis No
Enterococcus villorum Yes DSM 15688T JUG
Epidermophyton floccosum tinea pedis, tinea cruris, tinea corporis, and onychomycosis Fungus Skin 2 Yes 27 VML
Erwinia amylovora Yes 1_79 MMG, 273 MMG, CFBP 1232T MMG, CFBP 1232T PAH, MR1 MMG
Erwinia billingiae Yes 660 MMG, DSM 17872T HAM, 661 MMG, EB 661 PAH
Erwinia mallotivora Yes CFBP 2503T MMG, DSM 4565T HAM
Erwinia oleae No
Erwinia papayae Yes DSM 16540T HAM
Erwinia persicina No
Erwinia persicina Yes CFBP 3622T PAH, LMG 11254T HAM, MMG
Erwinia piriflorinigrans No
Erwinia psidii Yes CFBP 3627T MMG, DSM 17597T HAM
Erwinia pyrifoliae Yes 16_96 MMG, 1_96 MMG, DSM 12163T HAM, Ejp557 MMG, Ep 16_96 PAH, Ep 1_96 PAH
Erwinia rhapontici Yes CFBP 3618T PAH, DSM 4484T HAM, MMG
Erwinia sp. Yes 10w414559 RLH
Erwinia tasmaniensis Yes 1_99 MMG, 2_99 MMG, 4_99 MMG, Et 1_99 PAH, Et 2_99 PAH
Erwinia toletana No
Erwinia tracheiphila Yes DSM 21139T DSM
Erwinia typographi No
Erysipelothrix inopinata Yes DSM 15511T DSM
Erysipelothrix rhusiopathiae Erysipeloid (cellulitis with painful, pruritic skin lesions) Aerobic or facultatively anaerobic gram+ rods 2 Yes B9788 IBS, DSM 5055T DSM, DSM 5056 DSM, DSM 5057 DSM, DSM 5058 DSM, EDQM Serotyp1 FLR, EDQM Serotyp2 FLR, ERY604 IBS, ERYB19478 IBS, FF XI SerotypN FLR
Erysipelothrix tonsillarum Yes DSM 14972T DSM
Escherichia albertii Yes DSM 17582T HAM
Escherichia coli Yes ATCC 25922 CHB, ATCC 35218 CHB, ATCC 25922 THL, B421 UFL, DH5alpha BRL, DSM 30083T HAM, ESBL_EA_RSS_1528T CHB, MB11464_1 CHB, Nissl VML, RV412_A1_2010_06a LBK, W3350 MMG
Escherichia fergusonii Yes DSM 13698 HAM
Escherichia hermannii Yes 12048047 MVD, CS 573_1a BRB, DSM 4560T DSM
Escherichia vulneris Yes DSM 4564T DSM
Eubacterium acidaminophilum No
Eubacterium aggregans No
Eubacterium angustum No
Eubacterium barkeri No
Eubacterium biforme No
Eubacterium brachy Yes DSM 3990T DSM
Eubacterium budayi No
Eubacterium callanderi Yes IBS_MS_40 IBS
Eubacterium cellulosolvens No
Eubacterium combesii No
Eubacterium contortum No
Eubacterium coprostanoligenes No
Eubacterium cylindroides No
Eubacterium desmolans No
Eubacterium dolichum No
Eubacterium eligens No
Eubacterium fissicatena No
Eubacterium hadrum No
Eubacterium hallii No
Eubacterium infirmum No
Eubacterium lentum No
Eubacterium limosum Yes 11 RLT, DSM 20517 DSM, DSM 20543T DSM, DSM 2593 DSM, DSM 2594 DSM
Eubacterium minutum No
Eubacterium moniliforme No
Eubacterium multiforme No
Eubacterium nitritogenes No
Eubacterium nodatum No
Eubacterium oxidoreducens No
Eubacterium plexicaudatum No
Eubacterium pyruvativorans No
Eubacterium ramulus No
Eubacterium rectale No
Eubacterium ruminantium No
Eubacterium saburreum No
Eubacterium saphenum No
Eubacterium siraeum No
Eubacterium sp[2] Yes 09_28_02 Bplus IBS
Eubacterium sulci No
Eubacterium tarantellae No
Eubacterium tenue No
Eubacterium tortuosum No
Eubacterium uniforme No
Eubacterium ventriosum No
Eubacterium xylanophilum No
Eubacterium yurii Yes 10 RLT
Eubacterium yurii ssp. margaretiae No
Eubacterium yurii ssp. schtitka No
Eubacterium yurii ssp. yurii No
Ewingella americana Oppurtunistic pathogen infects immunocompromized patients Gram-, rod, aerobe wounds, sputum, urine, feces, blood, conjunctiva and peritoneal dialysate Yes 19_QK 122 MHH, DSM 4580T HAM, RV412_A1_2010_01 LBK
Exiguobacterium aurantiacum Yes 290 RLT
Exiguobacterium sp Yes %5B4%5D 10_0147905_007_01 LGL, %5B4%5D 10_0147905_008_01 LGL, %5B4%5D 911600255 LBK
Exophiala dermatitidis Yeast-like fungus Yes NRZ_133 LFH, RVE_08I VML, VML
Facklamia hominis Yes CIP 105962T_2 CIP, CIP 105963_2 CIP, UR03446_08 ERL
Facklamia ignava No
Facklamia languida Yes 19 RLT
Facklamia miroungae No
Facklamia sourekii No
Facklamia tabacinasalis No
Filifactor alocis No
Filifactor villosum Yes 1051_NCTC 11220T BOG
Filobasidium capsuligenum Fungus Yes DSM 70253 DSM
Finegoldia magna Yes 07_937 N5 IBS, 06_469 IBS, DSM 20362 DSM, DSM 20369 DSM, DSM 20470T DSM, DSM 20472 DSM, HU27914 PNU, HU29642_2 PNU, HU29644_1 PNU, 110706_D1 LUMC, HU30296_1 PNU
Flavobacterium acidificum No
Flavobacterium acidurans No
Flavobacterium algicola No
Flavobacterium anhuiense No
Flavobacterium antarcticum No
Flavobacterium aquatile No
Flavobacterium aquidurense No
Flavobacterium banpakuense No
Flavobacterium beibuense No
Flavobacterium branchiophilum No
Flavobacterium caeni No
Flavobacterium cauense No
Flavobacterium ceti No
Flavobacterium cheniae No
Flavobacterium cheonanense No
Flavobacterium chungangense No
Flavobacterium chungbukense No
Flavobacterium chungnamense No
Flavobacterium columnare No Flavobacterium columnare F512
Flavobacterium croceum No
Flavobacterium cucumis No
Flavobacterium daejeonense No
Flavobacterium defluvii No
Flavobacterium degerlachei No
Flavobacterium denitrificans No
Flavobacterium devorans No
Flavobacterium dongtanense No
Flavobacterium filum No
Flavobacterium flevense Yes DSM 1076T HAM
Flavobacterium fluvii No
Flavobacterium frigidarium No
Flavobacterium frigidimaris No
Flavobacterium frigoris No
Flavobacterium fryxellicola No
Flavobacterium gelidilacus Yes DSM 15343T HAM
Flavobacterium gillisiae No
Flavobacterium ginsenosidimutans No
Flavobacterium glaciei No
Flavobacterium glycines No
Flavobacterium granuli No
Flavobacterium haoranii No
Flavobacterium hercynium No
Flavobacterium hibernum Yes DSM 12611T HAM
Flavobacterium hydatis Yes DSM 2063T HAM
Flavobacterium indicum No
Flavobacterium johnsoniae Yes DSM 2064T HAM
Flavobacterium koreense No
Flavobacterium limicola No
Flavobacterium lindanitolerans Yes 991400534 LBK
Flavobacterium macrobrachii No
Flavobacterium micromati No
Flavobacterium mizutaii No
Flavobacterium myungsuense No
Flavobacterium oceanosedimentum No
Flavobacterium omnivorum No
Flavobacterium oncorhynchi No
Flavobacterium pectinovorum Yes DSM 6368T HAM
Flavobacterium phragmitis No
Flavobacterium ponti No
Flavobacterium psychrolimnae No
Flavobacterium psychrophilum 2 No F510
Flavobacterium reichenbachii No
Flavobacterium resistens No
Flavobacterium rivuli No
Flavobacterium saccharophilum Yes DSM 1811T HAM
Flavobacterium saliperosum Yes DSM 6368T HAM
Flavobacterium sasangense No
Flavobacterium segetis No
Flavobacterium sinopsychrotolerans No
Flavobacterium soli No
Flavobacterium subsaxonicum No
Flavobacterium succinicans No
Flavobacterium suncheonense No
Flavobacterium swingsii No
Flavobacterium tegetincola No
Flavobacterium terrae No
Flavobacterium terrigena No
Flavobacterium thermophilum No
Flavobacterium tiangeerense No
Flavobacterium urumqiense No
Flavobacterium weaverense No
Flavobacterium xanthum No
Flavobacterium xinjiangense No
Flavobacterium xueshanense No
Flavobacterium yonginense No
Flavonifractor plautii Yes DSM 6740T DSM, 110706_H5 LUMC
Francisella halioticida Gram-, coccobaccilli or rod-shaped, non-motile, strict aerobe. No
Francisella hispaniensis Gram-, coccobaccilli or rod-shaped, non-motile, strict aerobe. No
Francisella noatunensis Gram-, coccobaccilli or rod-shaped, non-motile, strict aerobe. No
Francisella noatunensis ssp noatunensis Gram-, coccobaccilli or rod-shaped, non-motile, strict aerobe. No
Francisella noatunensis ssp orientalis Gram-, coccobaccilli or rod-shaped, non-motile, strict aerobe. No
Francisella philomiragia Gram-, coccobaccilli or rod-shaped, non-motile, strict aerobe. 2 Yes F184 IMBM, F185 IMBM, ATCC 25015 F51 IMBM, ATCC 25016 F50 IMBM, ATCC 25017 F93 IMBM, ATCC 25018 F94 IMBM
Fusarium poae Grass pathogen Fungus Yes DSM 62376 HED
Fusarium proliferatum Fungus Yes 80 VML
Fusobacterium canifelinum Yes DSM 15542T DSM, DSM 15543 DSM, DSM 15542T BRB, DSM 15543 BRB
Fusobacterium equinum Yes DSM 17476T DSM
Fusobacterium gonidiaformans No DSM 19810T DSM, 110706_B5 LUMC, 110706_G3 LUMC
Fusobacterium mortiferum Yes DSM 19809T DSM, DSM 19809T BRB
Fusobacterium naviforme Yes DSM 20699 DSM, DSM 20699 BRB
Fusobacterium necrogenes No
Fusobacterium necrophorum Yes 100617_05 PNU
Fusobacterium necrophorum ssp funduliforme Yes DSM 19678T DSM
Fusobacterium necrophorum ssp necrophorum Yes CCM 5982 CCM, DSM 20698 DSM, 110324_20 PNU, DSM 20698 BRB, DSM 21784T DSM
Fusobacterium nucleatum Yes 100617_02 PNU, 110706_B6 LUMC, 110706_B7 LUMC, 110706_B8 LUMC, BK635_11 ERL
Fusobacterium nucleatum ssp animalis Yes DSM 19679T DSM
Fusobacterium nucleatum ssp fusiforme Yes DSM 19508T DSM, DSM 19508T BRB
Fusobacterium nucleatum ssp nucleatum Yes DSM 15643T DSM, DSM 15643T BRB
Fusobacterium nucleatum ssp polymorphum Yes DSM 20482T DSM
Fusobacterium nucleatum ssp vincentii Yes DSM 19507T DSM, DSM 19507T BRB
Fusobacterium perfoetens No
Fusobacterium periodonticum Yes DSM 19545T DSM
Fusobacterium russii No
Fusobacterium simiae No
Fusobacterium sp[2] Yes 08_001 N5 IBS, 110324_90 PNU
Fusobacterium ulcerans Yes DSM 19847T DSM
Fusobacterium varium Yes DSM 19868T DSM, DSM 19868T BRB
Gallibacterium anatis Yes DSM 16844T DSM, GD45 GDD
Gallibacterium melopsittaci No
Gallibacterium salpingitidis No
Gallibacterium trehalosifermentans No
Gardnerella sp Yes 110324_90 PNU
Gardnerella vaginalis Yes 1 PGM, 2 PGM, 5 PGM, Artush PGM, DSM 4944T DSM
Gemella asaccharolytica No
Gemella bergeri Yes CIP 105584T_2 CIP
Gemella cuniculi No
Gemella haemolysans Yes G226 IBS, 100617_53 PNU
Gemella morbillorum Yes DSM 20572T DSM, P3bue_re4AN USH, P3flue_li11AN USH, P3flue_re3AN USH
Gemella palaticanis No
Gemella sanguinis Yes CIP 105929T_3 CIP, CIP 105931_3 CIP, 100617_50 PNU, 110706_C5 LUMC
Geobacillus caldoxylosilyticus Gram+ No
Geobacillus debilis Gram+ No
Geobacillus galactosidasius Gram+ No
Geobacillus jurassicus Gram+ No
Geobacillus kaustophilus Gram+ Yes DSM 7263T DSM
Geobacillus lituanicus Gram+ No
Geobacillus stearothermophilus Gram+ Yes DSM 22T DSM, DSM 2027 DSM, DSM 457 DSM, DSM 5934 DSM
Geobacillus subterraneus Gram+ No
Geobacillus tepidamans Gram+ No
Geobacillus thermocatenulatus Gram+ No
Geobacillus thermodenitrificans Gram+ No
Geobacillus thermodenitrificans ssp. calidus Gram+ Yes DSM 22629T DSM, DSM 22628 DSM
Geobacillus thermodenitrificans ssp. thermodenitrificans Gram+ No
Geobacillus thermoglucosidasius Gram+ Yes DSM 2543 DSM, DSM 2542T DSM, DSM 21625 DSM
Geobacillus thermoleovorans Gram+ No
Geobacillus toebii Gram+ No
Geobacillus uzenensis Gram+ No
Geobacillus vulcani Gram+ No
Geotrichum silvicola Fungus Yes 04_007 LBK, 04_188 LBK, 04_322 LBK, 1 LBK, 2 LBK
Geotrichum sp Fungus Yes 116 PSB
Geotrichum_candidum[ana]# (Galactomyces_geotrichum[teleo]) Fungus Yes DSM 1240 DSM, RV_02 VML
Geotrichum_ingens[ana] (Dipodascus_ingens[teleo]#) Fungus Yes DSM 70069 DSM, DSM 70068 DSM
Globicatella sulfidifaciens Yes 11_0100356_001_01 LGL
Gluconacetobacter azotocaptans Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter diazotrophicus Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and roots 1 No
Gluconacetobacter entanii Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and roots 1 No
Gluconacetobacter europaeus Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter hansenii Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter intermedius Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 Yes DSM 11804T DSM
Gluconacetobacter johannae Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter liquefaciens Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 Yes DSM 5603T DSM
Gluconacetobacter nataicola Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter oboediensis Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter rhaeticus Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter sacchari Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter saccharivorans Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter sucrofermentans Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter swingsii Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconacetobacter xylinus Aerobic, Gram-, acetic acid bacteria, convert ethanol to acetic acid Plants and environmental samples 1 No
Gluconobacter albidus Gram- No
Gluconobacter cerinus Gram- Yes DSM 9533R DSM, DSM 7148 DSM
Gluconobacter frateurii Gram- No
Gluconobacter japonicus Gram- No
Gluconobacter kanchanaburiensis Gram- No
Gluconobacter kondonii Gram- No
Gluconobacter nephelii Gram- No
Gluconobacter oxydans ssp oxydans Gram- Yes B540_UFL, B544_UFL
Gluconobacter roseus Gram- No
Gluconobacter sphaericus Gram- No
Gluconobacter thailandicus Gram- No
Gluconobacter uchimurae Gram- No
Gluconobacter wancherniae Gram- No
Gordonia aichiensis Yes DSM 43978T DSM
Gordonia alkanivorans Yes DSM 44187 DSM
Gordonia amarae No
Gordonia amicalis No
Gordonia araii No
Gordonia australis Yes DSM 44454T DSM
Gordonia bronchialis Yes DSM 43247T DSM
Gordonia cholesterolivorans No
Gordonia defluvii No
Gordonia desulfuricans No
Gordonia effusa No
Gordonia hankookensis No
Gordonia hirsuta No
Gordonia hongkongensis Bacteraemia, Continuous ambulatory peritoneal dialysis (CAPD)-related peritonitis Bacteria Human 2 No HKU50T HKU, HKU46 HKU
Gordonia humi No
Gordonia hydrophobica No
Gordonia kroppenstedtii No
Gordonia lacunae No NRRL B-24551T HKU
Gordonia malaquae No
Gordonia namibiensis No
Gordonia neofelifaecis No
Gordonia otitidis No
Gordonia paraffinivorans No
Gordonia polyisoprenivorans No
Gordonia rhizosphera No
Gordonia rubripertincta Yes B310 UFL, B302 UFL, DSM 43197T DSM, DSM 43240 DSM, DSM 43248 DSM, DSM 43291 DSM, DSM 43303 DSM, DSM 46066 DSM, DSM 46039 DSM, DSM 46038 DSM, DSM 43570 DSM
Gordonia shandongensis No
Gordonia sihwensis No
Gordonia sinesedis No
Gordonia soli No
Gordonia sputi Yes DSM 43022 DSM, DSM 43896T DSM, DSM 44019 DSM, DSM 46016 DSM, DSM 46087 DSM
Gordonia terrae Yes DSM 43568 DSM NRRL B-16283T HKU
Gordonia westfalica No
Gracilibacillus boraciitolerans No
Gracilibacillus dipsosauri Yes DSM 11125T DSM
Gracilibacillus halophilus No
Gracilibacillus halotolerans No
Gracilibacillus kekensis No
Gracilibacillus lacisalsi No
Gracilibacillus orientalis No
Gracilibacillus saliphilus No
Gracilibacillus thailandensis No
Gracilibacillus ureilyticus No
Granulicatella adiacens Might be linked to pancreatic cancer Gram+, catalase neg, Cocci Blood, urine, mouth flora 2 Yes 20_A875 MHH, DSM 9848T DSM, 30210_0575_Hemoc IBS, BK04980_09 ERL, 100617_33 PNU, 110324_3 PNU
Granulicatella balaenopterae Gram+, catalase neg, Cocci whale lung 1 Yes DSM 15827T DSM
Granulicatella elegans Endocarditis Gram+, catalase neg, Cocci Sputum 2 Yes DSM 11693T DSM
Grimontia hollisae Yes LMG 17719T HAM
Guehomyces pullulans Yeast Yes CBS 6321 CBS, CBS 2542 CBS, CBS 2532T CBS
Haemophilus aegyptius No
Haemophilus ducreyi Yes DSM 8925T DSM
Haemophilus felis No
Haemophilus haemoglobinophilus Yes CIP 5388 CTL
Haemophilus haemolyticus 2 Yes HH ATCC 33390 SLH, HH AMC 2030823 SLH, DN 726 SLH, DN 658 SLH, DN 639 SLH, DN 636 SLH, DN 624 SLH, DN 161 SLH, DN 140 SLH, DN 136 SLH, DN 121 SLH, DN 108 SLH, DN 105 SLH, DN 093 SLH, DN 075 SLH, DN 073 SLH, DN 062 SLH, DN 037 SLH, DN 014 SLH, DN 005 SLH, CCUG 12834T CCUG
Haemophilus influenzae Yes ATCC 35056 THL, ATCC 9006 THL, DSM 10000 DSM, DSM 10001 DSM, DSM 11121 DSM, DSM 11969 DSM, DSM 4690T DSM, DSM 9999 DSM,
Haemophilus paracuniculus No
Haemophilus parahaemolyticus Yes DSM 21417T DSM, VP 58527 BOM, VP 58628 BOM, VP 58678 BOM, VP 58684 BOM, VP 59343 BOM
Haemophilus parainfluenzae Yes 21086307 MLD, DSM 8978T DSM, VP 58646 BOM, VP 58974 BOM, VP 59143 BOM, P2bue_re2AN USH, VA05021_10 ERL
Haemophilus paraphrohaemolyticus Yes CIP 102512T CTL
Haemophilus parasuis Yes 11_00501_1 VAXM, 11_00548_02 VAXM, 11_00578_03 VAXM
Haemophilus piscium No
Haemophilus pittmaniae Yes DSM 17240 DSM, VA15632_10 ERL
Hafnia alvei Yes 20740_1 CHB, DSM 30097 DSM, DSM 30098 DSM, DSM 30099 DSM, DSM 30101 DSM, DSM 30163T DSM, M110266 LDW
Hafnia paralvei No
Haloarcula amylolytica No
Haloarcula argentinensis No
Haloarcula hispanica No
Haloarcula japonica No
Haloarcula marismortui No
Haloarcula quadrata No
Haloarcula salaria No
Haloarcula tradensis No
Haloarcula vallismortis Yes B279 UFL
Halobacterium jilantaiense No
Halobacterium noricense No
Halobacterium piscisalsi No
Halobacterium salinarum Yes B277 UFL, B278 UFL
Halobacterium sp Yes HB46_B294 UFL
Halococcus dombrowskii No
Halococcus hamelinensis No
Halococcus morrhuae Yes B270 UFL, B271 UFL, B272 UFL
Halococcus qingdaonensis No
Halococcus saccharolyticus No
Halococcus salifodinae No
Halococcus thailandensis No
Halomonas alimentaria No
Halomonas alkaliantarctica No
Halomonas alkaliphila No
Halomonas almeriensis No
Halomonas andesensis No
Halomonas anticariensis No
Halomonas aquamarina Yes DSM 30161T DSM, DSM 4739 DSM
Halomonas arcis No
Halomonas axialensis No
Halomonas boliviensis No
Halomonas campaniensis No
Halomonas campisalis No
Halomonas caseinilytica No
Halomonas cerina No
Halomonas cupida Yes DSM 4740T DSM
Halomonas daqiaonensis No
Halomonas daqingensis No
Halomonas denitrificans No
Halomonas desiderata No
Halomonas elongata Yes B496 UFL, B558 UFL, B582 UFL
Halomonas eurihalina No
Halomonas fontilapidosi No
Halomonas gomseomensis No
Halomonas gudaonensis No
Halomonas halmophila Yes B508 UFL,B510 UFL
Halomonas halocynthiae No
Halomonas halodenitrificans Yes B505 UFL
Halomonas halodurans No
Halomonas halophila No
Halomonas hamiltonii No
Halomonas hydrothermalis No
Halomonas ilicicola No
Halomonas janggokensis No
Halomonas jeotgali No
Halomonas johnsoniae No
Halomonas kenyensis No
Halomonas koreensis No
Halomonas korlensis No
Halomonas kribbensis No
Halomonas lutea No
Halomonas magadiensis No
Halomonas maura No
Halomonas meridiana No
Halomonas mongoliensis No
Halomonas muralis No
Halomonas neptunia No
Halomonas nitroreducens No
Halomonas organivorans No
Halomonas pacifica Yes DSM 4742T DSM
Halomonas pantelleriensis No
Halomonas rifensis No
Halomonas sabkhae No
Halomonas saccharevitans No
Halomonas salifodinae No
Halomonas salina No
Halomonas shengliensis No
Halomonas sinaiensis No
Halomonas stenophila No
Halomonas stevensii No
Halomonas subglaciescola No
Halomonas subterranea No
Halomonas sulfidaeris No
Halomonas taeanensis No
Halomonas titanicae No
Halomonas variabilis No
Halomonas ventosae No
Halomonas venusta Yes DSM 4743T DSM
Halomonas vilamensis No
Halomonas xianhensis No
Halomonas xinjiangensis No
Halomonas zhanjiangensis No
Halotalea alkalilenta Gram- Yes CIP 109710T CIP
Hannaella luteola Yeast Yes CBS 943T CBS
Hanseniaspora lachancei Yeast Yes CBS 8818 11 ERL
Hanseniaspora opuntiae Yes MY970_2_09 ERL
Helcococcus kunzii Yes 02_VA_365906 MVO, 34 PIM, DSM 10548T DSM
Helcococcus ovis Yes DSM 21504T DSM
Helcococcus sueciensis Yes DSM 17243T DSM
Helicobacter acinonychis Aerobic and facultative anaerobic Gram- rods No
Helicobacter anseris Aerobic and facultative anaerobic Gram- rods No
Helicobacter aurati Aerobic and facultative anaerobic Gram- rods No
Helicobacter baculiformis Aerobic and facultative anaerobic Gram- rods No
Helicobacter bilis Aerobic and facultative anaerobic Gram- rods No
Helicobacter bizzozeronii Aerobic and facultative anaerobic Gram- rods No
Helicobacter brantae Aerobic and facultative anaerobic Gram- rods No
Helicobacter canadensis Aerobic and facultative anaerobic Gram- rods Yes NCTC 13242 CBB
Helicobacter canis Cellulitis, bacteremia, gastroenteritis in immunocompromised patients Aerobic and facultative anaerobic Gram- rods feces and blood samples 2 Yes CIP 104753T CBB, ZC80F NVU
Helicobacter cetorum Aerobic and facultative anaerobic Gram- rods No
Helicobacter cholecystus Aerobic and facultative anaerobic Gram- rods Yes CIP 105596T CBB
Helicobacter cinaedi Cellulitis, bacteremia, gastroenteritis in immunocompromised patients Aerobic and facultative anaerobic Gram- rods feces and blood samples 2 Yes CCUG 18818T NVU, DSM 5359T DSM
Helicobacter cynogastricus Aerobic and facultative anaerobic Gram- rods No
Helicobacter equorum Aerobic and facultative anaerobic Gram- rods No
Helicobacter felis Aerobic and facultative anaerobic Gram- rods No
Helicobacter fennelliae Bacteremia, gastroenteritis Aerobic and facultative anaerobic Gram- rods feces and blood samples 2 Yes DSM 7491T DSM
Helicobacter ganmani Aerobic and facultative anaerobic Gram- rods No
Helicobacter heilmannii Aerobic and facultative anaerobic Gram- rods No
Helicobacter hepaticus Possible cause of chronic hepatitis, liver cancer and inflammatory bowel disese Aerobic and facultative anaerobic Gram- rods Mucosal surfaces, liver samples 2 No
Helicobacter marmotae Aerobic and facultative anaerobic Gram- rods No
Helicobacter mastomyrinus Aerobic and facultative anaerobic Gram- rods No
Helicobacter mesocricetorum Aerobic and facultative anaerobic Gram- rods No
Helicobacter muridarum Aerobic and facultative anaerobic Gram- rods No
Helicobacter mustelae Aerobic and facultative anaerobic Gram- rods Yes CIP 103759T CBB
Helicobacter pametensis Aerobic and facultative anaerobic Gram- rods No
Helicobacter pullorum Aerobic and facultative anaerobic Gram- rods Yes CCUG 33837T NVU, CCUG 33839 CBB, CCUG 33840 CBB, Cb 581_07 NVU, Cb 600_07 NVU, Cb 601_07 NVU, NCTC 13154 CBB, NCTC 13156 CBB, NCTC 13157 CBB
Helicobacter pylori Gastritis, peptic and duodenal ulcers, gastric adenocarcinoma Aerobic and facultative anaerobic Gram- rods feces and blood samples 2 Yes 26695_ce PGM, 151 RLT, DSM 10242 DSM, DSM 21031T DSM, DSM 7492 DSM, DSM 9691 DSM, J99 PGM
Helicobacter rodentium Aerobic and facultative anaerobic Gram- rods No
Helicobacter salomonis Aerobic and facultative anaerobic Gram- rods No
Helicobacter suis Aerobic and facultative anaerobic Gram- rods No
Helicobacter trogontum Aerobic and facultative anaerobic Gram- rods No
Helicobacter typhlonius Aerobic and facultative anaerobic Gram- rods No
Helococcus kunzii Yes VA324_10 ERL
Herbaspirillum aquaticum Yes DSM 21191T DSM
Herbaspirillum autotrophicum Yes DSM 733 DSM
Herbaspirillum chlorophenolicum Yes DSM 17796T DSM
Herbaspirillum frisingense Yes DSM 13128T DSM, DSM 13129 DSM
Herbaspirillum hiltneri Yes DSM 17495T DSM
Herbaspirillum huttiense Yes DSM 10281T HAM
Herbaspirillum huttiense ssp huttiense Yes DSM 10281T DSM
Herbaspirillum huttiense ssp putei Yes DSM 21883T DSM
Herbaspirillum lusitanum Yes DSM 17154T DSM
Herbaspirillum rhizosphaerae Yes DSM 21885T DSM
Herbaspirillum rubrisubalbicans Yes DSM 11543T DSM, DSM 9440T DSM
Herbaspirillum seropedicae Yes DSM 6445T DSM, DSM 6446 DSM, DSM 6447 DSM
Herbaspirillum sp Yes DSM 14683 DSM
Herminiimonas arsenicoxydans Yes 308 RLT
Herminiimonas fonticola Yes 307 RLT
Histophilus somni Yes 512 LAL, GD34 GDD
Hydrogenibacillus schlegelii Mud from geothermally heated soil 1 Yes CIP 106933T CIP
Hydrogenophaga atypica No
Hydrogenophaga bisanensis No
Hydrogenophaga caeni No
Hydrogenophaga defluvii No
Hydrogenophaga flava Yes B339 UFL
Hydrogenophaga intermedia No
Hydrogenophaga palleronii No
Hydrogenophaga pseudoflava Yes B338 UFL
Hydrogenophaga taeniospiralis No
Hyphomicrobium sp Yes MB61 UFL, MB62 UFL, MB64 UFL
Ideonella azotifigens No
Ideonella dechloratans Yes CCUG 30977T PAH
Ignatzschineria cameli Maggots No UAE-HKU57T, UAE-HKU58, UAE-HKU59, UAE-HKU60, UAE-HKU61
Ignatzschineria indica Maggots Yes KCTC 22643T HKU
Ignatzschineria larvae Maggots No DSM 13226T HKU
Ignatzschineria ureiclastica Maggots No KCTC 22644T HKU
Inquilinus ginsengisoli No
Inquilinus limosus Yes DSM 16000T HAM, 21_Typ508 MHH
Iodobacter fluviatilis Yes DSM 3764T DSM
Janthinobacterium agaricidamnosum No
Janthinobacterium lividum Yes B379 UFL, CIP 106720T HAM
Jeotgalicoccus aerolatus Gram+ No
Jeotgalicoccus coquinae Gram+ No
Jeotgalicoccus halophilus Gram+ No
Jeotgalicoccus halotolerans Gram+ Yes DSM 17274T DSM
Jeotgalicoccus huakuii Gram+ No
Jeotgalicoccus marinus Gram+ No
Jeotgalicoccus nanhaiensis Gram+ No
Jeotgalicoccus pinnipedialis Gram+ No
Jeotgalicoccus psychrophilus Gram+ No
Joetgalibacillus campisalis No
Joetgalibacillus marinus Yes DSM 1297T DSM
Jonesia denitrificans Gram+, non-acid-fast, coryneform Yes DSM 20603T DSM, CIP 103473T IBS, DSM 10202T DSM
Jonesia quinghaiensis Gram+, non-acid-fast, coryneform No
Kandleria vitulina Yes DSM 20405T DSM
Kazachstania bovina Yeast Yes CBS 2760T CBS
Kazachstania telluris group Yeast (fungus) Yes VML
Kerstersia gyiorum Yes BL_102065 UKH, V669 MCRF
Kingella denitrificans Aerobic and facultative anaerobic Gram- rods No
Kingella kingae Subacute endocarditis Aerobic and facultative anaerobic Gram- rods Blood samples, mucosal surfaces 2 Yes RV_4 LBK, DSM 7536T DSM, CCM 6198 CCM, CCM 5679T CCM
Kingella oralis Aerobic and facultative anaerobic Gram- rods Yes RV_4 LBK, DSM 7536T DSM
Kingella potus Aerobic and facultative anaerobic Gram- rods Yes DSM 18304T DSM
Kitasatospora arboriphila Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora atroaurantiaca Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora azatica Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora cheerisanensis Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora cineracea Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora cystarginea Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora gansuensis Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora griseola Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora kazusensis Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora kifunensis Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora mediocidica Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora niigatensis Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora nipponensis Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora paracochleata Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora paranensis Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora phosalacinea Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. Yes HKI 222 HKJ
Kitasatospora putterlickiae Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora saccharophila Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora sampliensis Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora setae Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora terrestris Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Kitasatospora viridis Aerobic, Gram+, non-motile, chemo-organotrophic actinomycetes. No
Klebsiella granulomatis Aerobic and facultative anaerobic gram- rods No
Klebsiella oxytoca Aerobic and facultative anaerobic gram- rods Yes ESBL 30298 PFM, DSM 5175T HAM, ATCC 700324 THL, 35130 PFM, VA20876_1_09 ERL, VA20876_2_09 ERL, VA20879_09 ERL, VA31877_09 ERL
Klebsiella pneumoniae Pneumonia, urinary tract infections Aerobic and facultative anaerobic gram- rods Urine samples, mucosal surfaces of the respiratory tract Yes RV_BA_03_B LBK, 37924 PFM, 37595 PFM, 37585 PFM CCUG 45421 SMI, CCUG 56233 SMI, CCUG 58545 SMI, CCUG 58547 SMI, KLIN 700 SMI, KLIN K691 SMI, KLIN K693 SMI, KLIN K695 SMI, KLIN K697 SMI, CCUG 58546 SMI
Klebsiella pneumoniae ssp ozaenae Pneumonia, urinary tract infections Aerobic and facultative anaerobic gram- rods Urine samples, mucosal surfaces of the respiratory tract Yes DSM 16358T HAM, CCM 5792T CCM
Klebsiella pneumoniae ssp pneumoniae Pneumonia, urinary tract infections Aerobic and facultative anaerobic gram- rods Urine samples, mucosal surfaces of the respiratory tract Yes DSM 30104T HAM, 9295_1 CHB
Klebsiella pneumoniae ssp rhinoscleromatis Pneumonia, urinary tract infections Aerobic and facultative anaerobic gram- rods Urine samples, mucosal surfaces of the respiratory tract Yes CCM 5791T CCM, DSM 16231T HAM
Klebsiella singaporensis Aerobic and facultative anaerobic gram- rods No
Klebsiella variicola Aerobic and facultative anaerobic gram- rods Yes DSM 15968T HAM
Kloeckera_apiculata[ana] (Hanseniaspora_uvarum[teleo]#) Fungus Yes MY00441_10 ERL, DSM 2768 DSM, DSM 70788 DSM
Kluyvera ascorbata Yes DSM 4611T HAM, ST280_10 ERL
Kluyvera cryocrescens Yes DSM 4588T HAM
Kluyvera georgiana Yes DSM 9409T HAM
Kluyvera intermedia Yes DSM 4581T DSM, DSM 4581T HAM
Kocuria aegyptia Gram+, coagulase-negative, coccoid actinobacteria. Yes DSM 17006T DSM
Kocuria atrinae Gram+, coagulase-negative, coccoid actinobacteria. No
Kocuria carniphila Gram+, coagulase-negative, coccoid actinobacteria. Yes DSM 16004T DSM
Kocuria flava Gram+, coagulase-negative, coccoid actinobacteria. No
Kocuria gwangalliensis Gram+, coagulase-negative, coccoid actinobacteria. No
Kocuria halotolerans Gram+, coagulase-negative, coccoid actinobacteria. No
Kocuria himachalensis Gram+, coagulase-negative, coccoid actinobacteria. Yes DSM 44905T DSM
Kocuria koreensis Gram+, coagulase-negative, coccoid actinobacteria. No
Kocuria kristinae Acute cholecystitis Gram+, coagulase-negative, coccoid actinobacteria. Urine 2 Yes N235M19_QSA IBS, IBS, DSM 20321 DSM, DSM 20032T DSM
Kocuria marina Gram+, coagulase-negative, coccoid actinobacteria. Yes DSM 16420T DSM
Kocuria palustris Gram+, coagulase-negative, coccoid actinobacteria. Yes DSM 11925T DSM, CS 676_1 BRB
Kocuria polaris Gram+, coagulase-negative, coccoid actinobacteria. Yes DSM 14382T DSM
Kocuria rhizophila Gram+, coagulase-negative, coccoid actinobacteria. Yes DSM 46222 DSM, DSM 11926T DSM, DSM 348 DSM
Kocuria rosea Gram+, coagulase-negative, coccoid actinobacteria. Yes IMET 11363T HKJ, DSM 20447T DSM, DSM 12801 DSM, DSM 11630 DSM, B331 UFL
Kocuria salsicia Gram+, coagulase-negative, coccoid actinobacteria. No
Kocuria sp Gram+, coagulase-negative, coccoid actinobacteria. Yes 991600333 LBK, 991400503 LBK
Kocuria turfanensis Gram+, coagulase-negative, coccoid actinobacteria. No
Kocuria varians Gram+, coagulase-negative, coccoid actinobacteria. Yes DSM 20033T DSM
Kytococcus aerolatus Gram+, coccoid, non-encapsulated, nonmotile, aerobic and catalase-positive cells. No
Kytococcus schroeteri Gram+, coccoid, non-encapsulated, nonmotile, aerobic and catalase-positive cells. Yes DSM 13884T DSM
Kytococcus sedentarius Gram+, coccoid, non-encapsulated, nonmotile, aerobic and catalase-positive cells. Yes IMET 11362T HKJ
Lachancea fermentati Yeast Yes DSM 70521 DSM
Lachnoanaerobaculum orale Gram+ Yes CCUG 60305T UMU
Lachnoanaerobaculum saburreum Gram+ Yes CCUG 28089T UMU
Lachnoanaerobaculum umeaense Gram+ Yes CCUG 58757T UMU
Lactobacillus acetotolerans No null
Lactobacillus acidifarinae Yes 108702 CIP
Lactobacillus acidipiscis Yes DSM 15353 DSM, DSM 15836T DSM
Lactobacillus acidophilus Yes DSM 20079T DSM, DSM 20242 DSM, P3flue_li12AN USH
Lactobacillus agilis Yes DSM 20508 DSM, DSM 20509T DSM, DSM 20510 DSM
Lactobacillus algidus Yes DSM 15638T DSM
Lactobacillus alimentarius Yes DSM 20181 DSM, DSM 20249T DSM
Lactobacillus amylolyticus Yes DSM 11664T DSM
Lactobacillus amylophilus Yes DSM 20533T DSM
Lactobacillus amylotrophicus Yes DSM 20534T DSM
Lactobacillus amylovorus Yes DSM 16698 DSM, DSM 20531T DSM, DSM 20532 DSM, DSM 20552 DSM
Lactobacillus animalis No
Lactobacillus antri Yes DSM 16041T DSM, DSM 16042 DSM
Lactobacillus apodemi Yes CIP 108913T CIP
Lactobacillus aquaticus No
Lactobacillus aviarius No
Lactobacillus aviarius ssp araffinosus Yes CIP 103145T CIP
Lactobacillus aviarius ssp aviarius Yes DSM 20654 DSM
Lactobacillus bifermentans Yes DSM 20003T DSM
Lactobacillus bobalius No null
Lactobacillus brevis Yes DSM 1267 DSM, DSM 1268 DSM, DSM 20054T DSM, DSM 20556 DSM, DSM 2647 DSM
Lactobacillus buchneri Yes DSM 20057T DSM
Lactobacillus cacaonum No
Lactobacillus camelliae No
Lactobacillus capillatus No null
Lactobacillus casei Yes DSM 20011T DSM
Lactobacillus ceti No null
Lactobacillus coleohominis Yes CIP 106820T CIP
Lactobacillus collinoides Yes DSM 20486 DSM, DSM 20515T DSM
Lactobacillus composti No
Lactobacillus concavus Yes DSM 17758T DSM
Lactobacillus coryniformis No null
Lactobacillus coryniformis ssp coryniformis Yes DSM 20001T DSM, DSM 20007 DSM
Lactobacillus coryniformis ssp torquens Yes DSM 20005 DSM, DSM 20004T DSM
Lactobacillus crispatus Yes DSM 20356 DSM, DSM 20584T DSM, P10bue_re6AN USH
Lactobacillus crostorum No
Lactobacillus curvatus Yes DSM 20010 DSM, DSM 20019T DSM, DSM 20495 DSM, DSM 20496 DSM, DSM 20499 DSM
Lactobacillus delbrueckii No
Lactobacillus delbrueckii ssp bulgaricus Yes DSM 20081T DSM
Lactobacillus delbrueckii ssp delbrueckii Yes DSM 20074T DSM
Lactobacillus delbrueckii ssp indicus Yes DSM 15996T DSM
Lactobacillus delbrueckii ssp lactis Yes DSM 20072T DSM, DSM 20073 DSM, DSM 20076 DSM, DSM 20355 DSM, CIP 101810 CIP
Lactobacillus dextrinicus No null
Lactobacillus diolivorans Yes DSM 14421T DSM
Lactobacillus equi Yes DSM 15833T DSM
Lactobacillus equicursoris No
Lactobacillus equigenerosi No
Lactobacillus fabifermentans No null
Lactobacillus farciminis Yes CIP 103136T CIP
Lactobacillus farraginis No
Lactobacillus fermentum Yes DSM 20049 DSM, DSM 20055 DSM, DSM 20391 DSM, CIP 102006 CIP
Lactobacillus floricola No null
Lactobacillus florum No null
Lactobacillus fornicalis No
Lactobacillus fructivorans Yes DSM 20203T DSM, DSM 20350 DSM, DSM 20353 DSM
Lactobacillus frumenti Yes CIP 106922T CIP
Lactobacillus fuchuensis Yes DSM 14340T DSM, DSM 14342 DSM, DSM 14341 DSM
Lactobacillus futsaii No null
Lactobacillus gallinarum Yes CIP 103611T CIP
Lactobacillus gasseri Yes 47 RLT, DSM 20077 DSM, DSM 20243T DSM, DSM 20604 DSM, UR254_10 ERL, CIP 101909 CIP
Lactobacillus gastricus Yes DSM 16045T DSM, DSM 16046 DSM
Lactobacillus ghanensis No
Lactobacillus gigeriorum No null
Lactobacillus graminis Yes DSM 20719T DSM
Lactobacillus hammesii Yes DSM 16381T DSM, DSM 16382 DSM
Lactobacillus hamsteri Yes DSM 5661T DSM
Lactobacillus harbinensis Yes DSM 16991T DSM
Lactobacillus hayakitensis No null
Lactobacillus helveticus Yes DSM 20075T DSM
Lactobacillus hilgardii Yes DSM 20051 DSM, DSM 20176T DSM
Lactobacillus homohiochii Yes DSM 20354 DSM, DSM 20571T DSM
Lactobacillus hordei No
Lactobacillus iners Yes CIP 105923T CIP
Lactobacillus ingluviei Yes DSM 14792 DSM, DSM 15946T DSM
Lactobacillus intestinalis Yes DSM 6629T DSM
Lactobacillus jensenii Yes 154 RLT, DSM 20557T DSM, 110324_94 PNU
Lactobacillus johnsonii Yes DSM 20553 DSM
Lactobacillus kalixensis Yes DSM 16043T DSM, DSM 16044 DSM
Lactobacillus kefiranofaciens No
Lactobacillus kefiranofaciens ssp kefiranofaciens No
Lactobacillus kefiranofaciens ssp kefirgranum Yes DSM 10550T DSM
Lactobacillus kefiri Yes DSM 20485 DSM, DSM 20587T DSM, DSM 20588 DSM
Lactobacillus kimchicus No
Lactobacillus kimchii Yes DSM 13961T DSM
Lactobacillus kisonensis No null
Lactobacillus kitasatonis Yes DSM 16761T DSM
Lactobacillus koreensis No
Lactobacillus kunkeei Yes DSM 12361T DSM
Lactobacillus leichmannii No
Lactobacillus lindneri Yes DSM 20690T DSM, DSM 20692 DSM
Lactobacillus malefermentans Yes DSM 20177 DSM, DSM 20570 DSM, DSM 5705T DSM
Lactobacillus mali Yes DSM 20444T DSM, DSM 20483 DSM
Lactobacillus manihotivorans Yes CIP 105851T CIP
Lactobacillus mindensis Yes DSM 14500T DSM
Lactobacillus mucosae Yes DSM 13345T DSM
Lactobacillus murinus Yes DSM 20452T DSM, DSM 20453 DSM
Lactobacillus nagelii Yes DSM 13675T DSM
Lactobacillus namurensis No
Lactobacillus nantensis Yes DSM 16982T DSM
Lactobacillus nasuensis No
Lactobacillus nodensis No
Lactobacillus odoratitofui No
Lactobacillus oeni No null
Lactobacillus oligofermentans Yes DSM 15704 DSM, DSM 15705 DSM, DSM 15708 DSM, DSM 15709 DSM
Lactobacillus oris Yes DSM 4865 DSM, DSM 4866 DSM
Lactobacillus otakiensis No null
Lactobacillus ozensis No null
Lactobacillus panis Yes DSM 6035T DSM
Lactobacillus pantheris Yes DSM 15945T DSM
Lactobacillus parabrevis No
Lactobacillus parabuchneri Yes DSM 5987 DSM, DSM 15352 DSM, DSM 5706 DSM, DSM 5707T DSM, DSM 5708 DSM
Lactobacillus paracasei ssp paracasei Yes DSM 20006 DSM, DSM 20008 DSM, DSM 20020 DSM, DSM 20207 DSM, DSM 20244 DSM, DSM 20312 DSM, DSM 2649 DSM, DSM 46331 DSM, DSM 5622T DSM, DSM 5457 DSM, DSM 8742 DSM, DSM 8741 DSM, CIP 102309 CIP
Lactobacillus paracasei ssp tolerans Yes DSM 20012 DSM, DSM 20258T DSM
Lactobacillus paracollinoides Yes DSM 15502T DSM
Lactobacillus parafarraginis No null
Lactobacillus parakefiri Yes DSM 10551T DSM
Lactobacillus paralimentarius Yes DSM 13238T DSM
Lactobacillus paraplantarum Yes DSM 10641 DSM, DSM 10667T DSM
Lactobacillus paucivorans No
Lactobacillus pentosus Yes DSM 20199 DSM, DSM 16366 DSM, DSM 20314T DSM
Lactobacillus perolens Yes DSM 12744T DSM, DSM 12745 DSM
Lactobacillus plantarum Yes DSM 1055 DSM, DSM 12028 DSM, DSM 13273 DSM, DSM 20205 DSM, DSM 20246 DSM, DSM 2601 DSM, DSM 2648 DSM
Lactobacillus plantarum ssp argentoratensis Yes DSM 16365T DSM
Lactobacillus plantarum ssp plantarum Yes DSM 20174T DSM
Lactobacillus pobuzihii No
Lactobacillus pontis Yes DSM 8475T DSM
Lactobacillus psittaci Yes CIP 106492 CIP
Lactobacillus rapi No
Lactobacillus rennini Yes DSM 20253T DSM, DSM 20254 DSM
Lactobacillus reuteri Yes DSM 20015 DSM, DSM 20016T DSM, DSM 20053 DSM, DSM 20056 DSM, DSM 8534 DSM
Lactobacillus rhamnosus Yes CIP A157T CIP, DSM 20021T DSM, CIP 102623 CIP
Lactobacillus rogosae No
Lactobacillus rossiae Yes DSM 15814T DSM
Lactobacillus ruminis Yes DSM 20403T DSM, DSM 20511 DSM, DSM 20404 DSM
Lactobacillus saerimneri Yes DSM 16049T DSM, DSM 16027 DSM
Lactobacillus sakei Yes DSM 6333 DSM, DSM 20497 DSM, DSM 20494 DSM, DSM 20101 DSM, DSM 20100 DSM
Lactobacillus sakei ssp carnosus Yes DSM 15740 DSM, DSM 15831T DSM
Lactobacillus sakei ssp sakei Yes DSM 20017T DSM
Lactobacillus salivarius Yes DSM 20555T DSM, DSM 20492 DSM, DSM 20554 DSM
Lactobacillus sanfranciscensis Yes DSM 20451T DSM, DSM 20663 DSM
Lactobacillus saniviri No
Lactobacillus satsumensis Yes DSM 16230T DSM
Lactobacillus secaliphilus No
Lactobacillus selangorensis No
Lactobacillus senioris No
Lactobacillus senmaizukei No null
Lactobacillus sharpeae Yes DSM 20504 DSM, DSM 20505T DSM, DSM 20506 DSM, DSM 20507 DSM
Lactobacillus siliginis No null
Lactobacillus similis No null
Lactobacillus sp Yes CIP 100850 CIP, CIP 101430 CIP, CIP 103701 CIP, DSM 10125 DSM
Lactobacillus spicheri Yes DSM 15429T DSM
Lactobacillus sucicola No
Lactobacillus suebicus Yes DSM 5008 DSM, DSM 5007T DSM
Lactobacillus sunkii No null
Lactobacillus taiwanensis No
Lactobacillus thailandensis No
Lactobacillus tucceti No null
Lactobacillus ultunensis Yes DSM 16048 DSM, DSM 16047T DSM
Lactobacillus uvarum No null
Lactobacillus vaccinostercus Yes DSM 20634T DSM, DSM 15802T DSM
Lactobacillus vaginalis Yes CIP 105932T CIP, P10bue_re1AN USH, P10bue_re4AN USH, P4bue_li2AN USH null
Lactobacillus versmoldensis Yes DSM 14857T DSM
Lactobacillus vini Yes DSM 20605T DSM
Lactobacillus xiangfangensis No
Lactobacillus zeae Yes DSM 20178T DSM
Lactobacillus zymae Yes CIP 108703T CIP
Lactococcus chungangensis No
Lactococcus fujiensis No
Lactococcus garvieae Yes DSM 20684T DSM, DSM 6783 DSM
Lactococcus lactis Yes IBS_MS_6 IBS
Lactococcus lactis ssp cremoris Yes DSM 20069T DSM, DSM 20388 DSM
Lactococcus lactis ssp hordniae No null
Lactococcus lactis ssp lactis Yes 3C1_QSA IBS, DSM 20175 DSM, DSM 20384 DSM, DSM 20481T DSM, DSM 20661 DSM
Lactococcus lactis ssp tructae No
Lactococcus piscium Yes DSM 6634T LGL
Lactococcus plantarum Yes DSM 20686T DSM
Lactococcus raffinolactis Yes DSM 20443T DSM
Laribacter hongkongensis Gram- Yes DSM 14985T DSM
Lecanicillium tenuipes Fungus Spider 1 No CBS 658.80 HKU
Lechevalieria aerocolonigenes No
Lechevalieria atacamensis No null
Lechevalieria deserti No null
Lechevalieria flava Yes IMET 9748T HKJ
Lechevalieria fradiae No
Lechevalieria roselyniae No null
Lechevalieria xinjiangensis No null
Leclercia adecarboxylata Yes CCM 4443 CCM, DSM 5077T HAM
Lecythophora hoffmannii Fungus Yes 118 VML
Legionella adelaidensis Aerobic and facultative anaerobic Gram- rods 2 No CCUG 31231B SMI
Legionella anisa Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 35290 YH VUN, ATCC 35291 TW VUN, ATCC 35292T YH VUN, DSM 17627T DSM, LB_105416_09 ERL, LP0076 TW VUN, LP0086 TW VUN, LP0109 TW VUN SMI L019 SMI, ATCC 35292 SMI
Legionella beliardensis Aerobic and facultative anaerobic Gram- rods 2 Yes CCUG 45921T TW VUN
Legionella birminghamiensis Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 43702T TW VUN, ATCC 700709 TW VUN, DSM 19232T DSM ATCC 43702 SMI, ATCC 43702 SMI
Legionella bozemanii Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 35545 TW VUN, ATCC 33217T TW VUN, CCUG 48836 TW VUN, CCUG 31569 TW VUN SMI L020 SMI, ATCC 35545 SMI, SMI F41ENK SMI, SMI F41ENK-M SMI, SMI L003 SMI, SMI L004 SMI, SMI L008 SMI, SMI L010 SMI, SMI L011 SMI, ATCC 33217 SMI, SMI L027 SMI, SMI L028 SMI
Legionella brunensis Aerobic and facultative anaerobic Gram- rods 2 Yes DSM 19236T DSM, BCRC 17046T TW VUN
Legionella busanensis Aerobic and facultative anaerobic Gram- rods 2 No
Legionella cherrii Aerobic and facultative anaerobic Gram- rods 2 Yes BCRC 17044T TW VUN, DSM 19213T DSM ATCC35252 SMI
Legionella cincinnatiensis Aerobic and facultative anaerobic Gram- rods 2 Yes DSM 19233T DSM, TW VUN ATCC 43753 SMI
Legionella drancourtii Aerobic and facultative anaerobic Gram- rods 2 No
Legionella dresdenensis Aerobic and facultative anaerobic Gram- rods 2 Yes DSM 19488T TUD CCUG 59858 SMI
Legionella drozanskii Aerobic and facultative anaerobic Gram- rods 2 No CCUG 43885 SMI
Legionella dumoffii Aerobic and facultative anaerobic Gram- rods 2 Yes 25 RLT, 26 RLT, ATCC 33279T TW VUN, CCUG 47789 TW VUN, LGNPNHL2003013 TW VUN, LGNPNHL2004005 TW VUN ATCC 33279 SMI
Legionella erythra Aerobic and facultative anaerobic Gram- rods 2 Yes CCUG 29667T TW VUN ATCC 35303 SMI
Legionella fallonii Aerobic and facultative anaerobic Gram- rods 2 No CCUG 43887 SMI
Legionella feeleii Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 35072T TW VUN, ATCC 35849 TW VUN, ATCC 700513 TW VUN, ATCC 700514 TW VUN, DSM 17645T DSM, LP0050 TW VUN SMI L015 SMI, SMI L016 SMI, SMI L017 SMI
Legionella geestiana Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 49504T TUD CCUG 44893 SMI
Legionella gormanii Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 43769 TW VUN, ATCC 33297T TW VUN SMI L006 SMI, ATCC 33297 SMI, SMI L024 SMI
Legionella gratiana Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 49413T TUD CCUG 44894 SMI
Legionella gresilensis Aerobic and facultative anaerobic Gram- rods 2 No CCUG 45920 SMI
Legionella hackeliae Aerobic and facultative anaerobic Gram- rods 2 Yes DSM 19214T DSM ATCC 35250 SMI
Legionella impletisoli Aerobic and facultative anaerobic Gram- rods 2 Yes DSM 18493T DSM
Legionella israelensis Aerobic and facultative anaerobic Gram- rods 2 Yes CCUG 31115T TW VUN ATCC 43119 SMI
Legionella jamestowniensis Aerobic and facultative anaerobic Gram- rods 2 Yes DSM 19215T DSM
Legionella jordanis Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 33623T TW VUN, ATCC 700762 TW VUN ATCC 33623 SMI, 4308I SMI
Legionella lansingensis Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 49751T TW VUN
Legionella londiniensis Aerobic and facultative anaerobic Gram- rods 2 No ATCC 700510 SMI
Legionella longbeachae Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 33462T TW VUN, ATCC 33484 TW VUN, CCUG 28612 TW VUN, DSM 10572T DSM SMI L001 SMI, SMI L002 SMI, ATCC 33484 SMI, ATCC 33462 SMI
Legionella lytica Aerobic and facultative anaerobic Gram- rods 2 No
Legionella maceachernii 2 Yes 28 RLT SMI 4270I SMI
Legionella macheachernii Aerobic and facultative anaerobic Gram- rods 2 Yes 28 RLT
Legionella moravica Aerobic and facultative anaerobic Gram- rods 2 Yes DSM 19234T DSM
Legionella nagasakiensis Aerobic and facultative anaerobic Gram- rods 2 No
Legionella nautarum Aerobic and facultative anaerobic Gram- rods 2 No CCUG 44900 SMI
Legionella norrlandica Aerobic and facultative anaerobic Gram- rods Biopurification tanks of wood processing plants 2 No SMI 4329II SMI, SMI, SMI 4327I SMI, SMI LEGN SMI
Legionella oakridgensis Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 700515 TW VUN SMI L012 SMI, SMI L013 SMI, ATCC 33761 SMI
Legionella parisiensis Aerobic and facultative anaerobic Gram- rods 2 Yes DSM 19216T DSM ATCC 35299 SMI
Legionella pneumophila Legionella (pneumonia), Pontiac fever Aerobic and facultative anaerobic Gram- rods environmental samples, mucosal serfaces 2 Yes LGN_PNHL_2004_146 TW VUN, LGN_PNHL_2003_058 TW VUN, LGN_PNHL_2003_057 TW VUN ATCC 33152 SMI, HPA EQA1 SMI
Legionella pneumophila ssp fraseri Legionella (pneumonia), Pontiac fever Aerobic and facultative anaerobic Gram- rods environmental samples, mucosal serfaces 2 Yes ATCC 35251 TW VUN, ATCC 33216 TW VUN, DSM 7514T DSM ATCC 33156 SMI, ATCC 33216 SMI
Legionella pneumophila ssp pascullei Legionella (pneumonia), Pontiac fever Aerobic and facultative anaerobic Gram- rods environmental samples, mucosal serfaces 2 Yes DSM 7515T DSM
Legionella pneumophila ssp pneumophila Legionella (pneumonia), Pontiac fever Aerobic and facultative anaerobic Gram- rods environmental samples, mucosal serfaces 2 Yes ATCC 33152T THL, ATCC 33154 TW VUN, ATCC 33155 TW VUN, ATCC 35096 TW VUN, ATCC 43283 TW VUN ATCC 33823 SMI, ATCC 43111 SMI, OLDA ATCC 43109 SMI, NCTC 11191 SMI, ATCC 33154 SMI, ATCC 33215 SMI, ATCC 35096 SMI, ATCC 43283 SMI, ATCC 43290 SMI, ATCC 43703 SMI
Legionella quateirensis Aerobic and facultative anaerobic Gram- rods 2 No CCUG 44899 SMI
Legionella quinlivanii Aerobic and facultative anaerobic Gram- rods 2 No ATCC 43830 SMI
Legionella rowbothamii Aerobic and facultative anaerobic Gram- rods 2 No CCUG 43886 SMI
Legionella rubrilucens Aerobic and facultative anaerobic Gram- rods 2 Yes DSM 11884T DSM SMI L014 SMI, SMI L022 SMI, SMI L023 SMI, SMI L026 SMI, SMI L021 SMI, SMI L014 SMI
Legionella sainthelensi Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 35248T TW VUN, ATCC 49322 TW VUN, DSM 19231T DSM SMI L025 SMI
Legionella santicrucis Aerobic and facultative anaerobic Gram- rods 2 Yes 31 RLT, 32 RLT, DSM 23075T DSM
Legionella shakespearei Aerobic and facultative anaerobic Gram- rods 2 No CCUG 31228A SMI
Legionella sp Aerobic and facultative anaerobic Gram- rods 2 Yes LB_105290_09 ERL
Legionella spiritensis Aerobic and facultative anaerobic Gram- rods 2 No ATCC 35249 SMI
Legionella steigerwaltii Aerobic and facultative anaerobic Gram- rods 2 No CCUG 56441 SMI
Legionella taurinensis Aerobic and facultative anaerobic Gram- rods 2 No SMI L005 SMI, CCUG 44901 SMI
Legionella tucsonensis Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 49180T TW VUN, DSM 19246T DSM ATCC 49180 SMI
Legionella wadsworthii Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 33877T TW VUN ATCC 33877 SMI
Legionella waltersii Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 51914 TUD CCUG 44924 SMI
Legionella worsleiensis Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 49508T TUD CCUG 44923 SMI
Legionella yabuuchiae Aerobic and facultative anaerobic Gram- rods 2 Yes DSM 18492T DSM
Leifsonia antarctica No
Leifsonia aquatica Yes DSM 20146T DSM
Leifsonia bigeumensis No
Leifsonia cynodontis No
Leifsonia kafniensis No
Leifsonia kribbensis No
Leifsonia lichenia No
Leifsonia naganoensis No
Leifsonia pindariensis No
Leifsonia poae No
Leifsonia psychrotolerans No
Leifsonia rubra No
Leifsonia shinshuensis No
Leifsonia soli No
Leifsonia xyli No
Leifsonia xyli ssp. cynodontis No
Leifsonia xyli ssp. xyli No
Leminorella grimontii Yes DSM 5078T HAM
Leminorella richardii Yes DSM 14849T HAM
Leptospira alexanderi Gram-, obligate aerobe spirochete No
Leptospira biflexa Gram-, obligate aerobe spirochete No
Leptospira borgpetersenii Gram-, obligate aerobe spirochete No
Leptospira broomii Gram-, obligate aerobe spirochete No
Leptospira fainei Gram-, obligate aerobe spirochete No
Leptospira inadai Gram-, obligate aerobe spirochete No
Leptospira interrogans Leptosporiosis Gram-, obligate aerobe spirochete 2 No
Leptospira kirschneri Gram-, obligate aerobe spirochete No
Leptospira kmetyi Gram-, obligate aerobe spirochete No
Leptospira licerasiae Gram-, obligate aerobe spirochete No
Leptospira meyeri Gram-, obligate aerobe spirochete No
Leptospira noguchii Gram-, obligate aerobe spirochete No
Leptospira santarosai Gram-, obligate aerobe spirochete No
Leptospira weilii Gram-, obligate aerobe spirochete No
Leptospira wolbachii Gram-, obligate aerobe spirochete No
Leptospira wolffii Gram-, obligate aerobe spirochete No
Leptothrix cholodnii No
Leptothrix discophora No
Leptothrix lopholea No
Leptothrix mobilis Yes DSMZ 10617T_803 PAH, DSMZ 10617T_R2A PAH
Leptothrix ochracea No
Leptotrichia sp Yes 1A12043482_3e MVD
Leptotrichia trevisanii Yes P6flue_li2AN USH, P6flue_li3AN USH
Leptotrichia wadei Yes P3bue_re2AN USH
Leucobacter aerolatus Gram+ No
Leucobacter albus Gram+ No
Leucobacter alluvii Gram+ No
Leucobacter aridicollis Gram+ No
Leucobacter celer Gram+ No
Leucobacter chironomi Gram+ Yes DSM 19883T DSM
Leucobacter chromiireducens Gram+ No
Leucobacter chromiireducens subsp. chromiireducens Gram+ No
Leucobacter chromiireducens subsp. solipictus Gram+ No
Leucobacter chromiiresistens Gram+ No
Leucobacter denitrificans Gram+ Yes DSM 25936T DSM
Leucobacter exalbidus Gram+ No
Leucobacter iarius Gram+ No
Leucobacter komagatae Gram+ No
Leucobacter luti Gram+ No
Leucobacter salsicius Gram+ No
Leucobacter tardus Gram+ No
Leuconostoc carnosum Yes DSM 5576T LGL
Leuconostoc citreum Yes 24_A354 MHH, DSM 20188 DSM, DSM 5577T DSM, RV_3 LBK
Leuconostoc fallax No
Leuconostoc gasicomitatum No
Leuconostoc gelidum Yes DSM 5578T LGL
Leuconostoc holzapfelii Yes DSM 21478T LGL
Leuconostoc inhae Yes DSM 15101T LGL
Leuconostoc kimchii No
Leuconostoc lactis Yes DSM 20192 DSM, DSM 20202T DSM, DSM 8581 DSM
Leuconostoc mesenteroides ssp cremoris Yes DSM 20200 DSM, DSM 20346T DSM
Leuconostoc mesenteroides ssp dextranicum Yes DSM 20187 DSM
Leuconostoc mesenteroides ssp mesenteroides Yes DSM 20240 DSM, DSM 20241 DSM, DSM 20343T DSM
Leuconostoc miyukkimchii No
Leuconostoc palmae Yes DSM 21144T LGL
Leuconostoc pseudomesenteroides Yes DSM 20193T DSM, DSM 5624 DSM
Listeria grayi Yes DSM 20596 DSM, DSM 20601T DSM
Listeria innocua Yes DSM 20649T DSM
Listeria ivanovii ssp ivanovii Yes DSM 20750T DSM
Listeria ivanovii ssp londoniensis Yes DSM 12491T DSM
Listeria marthii No
Listeria monocytogenes Yes DSM 20600T DSM, Mb19348_1 CHB, ser4B ATCC 19115 THL, CCUG 61052 CCUG, CCUG 59664 CCUG, CCUG 53269 CCUG, CCUG 49753 CCUG, CCUG 35751 CCUG, CCUG 33548 CCUG, CCUG 32964A CCUG, CCUG 32843 CCUG, CCUG 31527 CCUG
Listeria rocourtiae No
Listeria seeligeri Yes DSM 20751T DSM
Listeria welshimeri Yes DSM 20650T DSM
Lodderomyces elongisporus Fungus Yes CBS 2605T CBS
Luteibacter rhizovicinus Yes W24351_2 CHOA
Lysinibacillus boronitolerans Yes DSM 17140T DSM
Lysinibacillus fusiformis Yes DSM 2898T DSM
Lysinibacillus macroides No
Lysinibacillus parviboronicapiens No
Lysinibacillus sphaericus Yes DSM 28T DSM, B323 UFL
Lysinibacillus xylanilyticus No
Macrococcus bovicus No
Macrococcus brunensis No
Macrococcus carouselicus No
Macrococcus caseolyticus Yes 5B2_QSA IBS, 5D3_QSA IBS, DSM 20597T DSM
Macrococcus equipercicus No
Macrococcus hajekii No
Macrococcus lamae No
Magnusiomyces capitatus Fungus Yes 258 PSB, 32 PIM, 281 PSB, RV_2_2005 AUR
Malassezia furfur Fungus Yes DSM 6170 DSM
Malassezia pachydermatis Fungus Yes VML
Malikia granosa No
Malikia spinosa Yes DSM 15801T HAM
Mannheimia caviae No
Mannheimia glucosida Yes DSM 19638T DSM
Mannheimia granulomatis Yes DSM 19156T DSM
Mannheimia haemolytica Yes DSM 5283 DSM, 535 LAL, DSM 10531T DSM, GD44 GDD
Mannheimia ruminalis No
Mannheimia varigena Yes DSM 19166T DSM
Marinilactibacillus psychrotolerans 2 Yes CIP 102166 CIP
Massilia aerilata No
Massilia albidiflava No
Massilia alkalitolerans No
Massilia aurea No
Massilia brevitalea No
Massilia consociata No
Massilia dura No
Massilia flava No
Massilia haematophila No null
Massilia jejuensis No null
Massilia lutea No null
Massilia niabensis No null
Massilia niastensis No null
Massilia oculi No null
Massilia plicata No null
Massilia sp Yes 992100145_2 LBK
Massilia suwonensis No null
Massilia timonae Yes VA_23089_03 17 UKE, 993500981 LBK, 86 PIM
Massilia varians No null
Megamonas sp[2] Yes 07_136 N2 IBS
Megasphaera micronuciformis Yes P5bue_3_5_2AN USH null
Mesoplasma entemophilum No
Mesoplasma florum No
Mesoplasma seiffertii No
Mesorhizobium albiziae No null
Mesorhizobium alhagi No
Mesorhizobium amorphae No
Mesorhizobium australicum No
Mesorhizobium camelthorni No
Mesorhizobium caraganae No null
Mesorhizobium chacoense No null
Mesorhizobium ciceri No null
Mesorhizobium gobiense No null
Mesorhizobium huakuii No null
Mesorhizobium loti Yes DSM 2626T DSM
Mesorhizobium mediterraneum No null
Mesorhizobium metallidurans No null
Mesorhizobium opportunistum No null
Mesorhizobium plurifarium No null
Mesorhizobium robiniae No
Mesorhizobium septentrionale No null
Mesorhizobium shangrilense No null
Mesorhizobium tarimense No null
Mesorhizobium temperatum No null
Mesorhizobium thiogangeticum No null
Mesorhizobium tianshanense No null
Methanomonas methylovora Yes MB69 UFL
Methanomonas methylovora ssp thiaminophila Yes MB68 UFL
Methylarcula marina Yes B512 UFL
Methylarcula terricola Yes B511 UFL
Methylobacillus flagellatus No null
Methylobacillus glycogenes Yes MB127 UFL
Methylobacillus pratensis No
Methylobacillus sp Yes MB118 UFL
Methylobacillus sp (glycogenes) Yes MB50 UFL, MB53 UFL
Methylobacterium adhaesivum No null
Methylobacterium aerolatum No
Methylobacterium aminovorans No null
Methylobacterium aquaticum No
Methylobacterium brachiatum No
Methylobacterium bullatum No null
Methylobacterium cerastii No null
Methylobacterium chloromethanicum No null
Methylobacterium dichloromethanicum No null
Methylobacterium extorquens Yes MB123 UFL, MB125 UFL, MB65 UFL, MB66 UFL, MB66 UFL, MB72 UFL, MB91 UFL
Methylobacterium fujisawaense Yes B235 UFL
Methylobacterium gossipiicola No null
Methylobacterium gregans No null
Methylobacterium hispanicum No null
Methylobacterium iners No
Methylobacterium isbiliense No
Methylobacterium jeotgali No null
Methylobacterium komagatae No null
Methylobacterium longum No null
Methylobacterium lusitanum No null
Methylobacterium marchantiae No null
Methylobacterium mesophilicum Yes MB162 UFL
Methylobacterium nodulans No null
Methylobacterium organophilum Yes MB67 UFL
Methylobacterium oryzae No null
Methylobacterium persicinum No null
Methylobacterium phyllosphaerae No
Methylobacterium platani No null
Methylobacterium podarium No
Methylobacterium populi No null
Methylobacterium radiotolerans Yes B236 UFL
Methylobacterium rhodesianum Yes B237 UFL, MB90 UFL, MB92 UFL, MB93 UFL, MB99 UFL, MB96 UFL, MB94 UFL
Methylobacterium rhodinum Yes MB161 UFL
Methylobacterium salsuginis No null
Methylobacterium sp Yes DSM 1857 DSM, Isolat_CAR HED, %5B2%5D CS 684_2 BRB
Methylobacterium suomiense No
Methylobacterium tardum No
Methylobacterium thiocyanatum No
Methylobacterium variabile No null
Methylobacterium zatmanii Yes B234 UFL
Microbacterium aerolatum Yes DSM 14217T DSM
Microbacterium agarici No null
Microbacterium aoyamense No null
Microbacterium aquimaris No null
Microbacterium arabinogalactanolyticum No
Microbacterium arborescens Yes DSM 20754T DSM
Microbacterium arthrosphaerae No null
Microbacterium aurantiacum No null
Microbacterium aurum Yes 55 RLT, DSM 8600T DSM
Microbacterium awajiense No null
Microbacterium azadirachtae No
Microbacterium barkeri Yes DSM 20145T DSM
Microbacterium binotii No null
Microbacterium chocolatum No
Microbacterium deminutum No null
Microbacterium dextranolyticum Yes DSM 8607T DSM
Microbacterium esteraromaticum No
Microbacterium flavescens Yes DSM 20643T DSM
Microbacterium flavum Yes 131 RLT
Microbacterium fluvii No null
Microbacterium foliorum Yes DSM 12966T DSM
Microbacterium ginsengisoli No null
Microbacterium ginsengiterrae No
Microbacterium gubbeenense No
Microbacterium halophilum No null
Microbacterium halotolerans Yes DSM 15855T DSM
Microbacterium hatanonis No null
Microbacterium hominis Yes DSM 12509T DSM
Microbacterium humi No null
Microbacterium hydrocarbonoxydans Yes DSM 16089T DSM
Microbacterium imperiale Yes DSM 20530T DSM
Microbacterium indicum No null
Microbacterium insulae No
Microbacterium invictum No null
Microbacterium keratanolyticum Yes DSM 8606T DSM
Microbacterium ketosireducens Yes DSM 12510T DSM
Microbacterium kitamiense No null
Microbacterium koreense Yes DSM 18332T DSM
Microbacterium kribbense No null
Microbacterium lacticum Yes DSM 20172 DSM, DSM 20427T DSM, IMET 10712T HKJ
Microbacterium lacus No
Microbacterium laevaniformans Yes DSM 20140T DSM
Microbacterium lindanitolerans No
Microbacterium liquefaciens Yes DSM 20637 DSM, DSM 20638T DSM, HKI 11374 HKJ
Microbacterium luteolum Yes DSM 20143T DSM
Microbacterium luticocti No null
Microbacterium marinilacus No
Microbacterium maritypicum Yes DSM 12512T DSM
Microbacterium mitrae Yes DSM 24780 DSM
Microbacterium natoriense Yes DSM 17277T DSM
Microbacterium oleivorans Yes DSM 16091T DSM, 425 RLT
Microbacterium oxydans Yes DSM 20578T DSM
Microbacterium paludicola Yes DSM 16915T DSM
Microbacterium paraoxydans No null
Microbacterium phyllosphaerae Yes DSM 13468T DSM
Microbacterium profundi No
Microbacterium pseudoresistens No
Microbacterium pumilum No
Microbacterium pygmaeum No null
Microbacterium radiodurans No
Microbacterium resistens Yes DSM 11986T DSM
Microbacterium saperdae Yes B245 UFL, IMET 11076T HKJ
Microbacterium schleiferi Yes DSM 20606 DSM
Microbacterium sediminicola No null
Microbacterium soli No null
Microbacterium sp Yes DSM 15461 DSM, DSM 20619 DSM, DSM 20620 DSM, DSM 20621 DSM
Microbacterium suwonense No
Microbacterium terrae Yes DSM 8610T DSM
Microbacterium terregens Yes DSM 20449T DSM
Microbacterium terricola No null
Microbacterium testaceum Yes IMET 10361T HKJ, DSM 20526 DSM, DSM 20166T DSM
Microbacterium thalassium Yes JCM 12079T DSM, DSM 12511T DSM
Microbacterium trichothecenolyticum Yes DSM 8608T DSM
Microbacterium ulmi Yes DSM 16931T DSM
Microbacterium xylanilyticum No null
Microbacterium yannicii No
Micrococcus antarcticus No
Micrococcus endophyticus No
Micrococcus flavus Yes CS 486 1 BRB
Micrococcus lactis No null
Micrococcus luteus Yes N203 CPB, BK_01140_09 ERL, IMET 11249 HKJ, 59 PIM, P1bue_re2aer USH
Micrococcus lylae Yes DSM 20315T LGL null
Micrococcus terreus Yes CS 822 1 BRB
Micrococcus yunnanensis No null
Micromonospora aurantiaca Fungus Yes DSM 43813T DSM, DSM 44438 DSM
Micromonospora carbonacea Fungus Yes DSM 43168T DSM, DSM 43815 DSM
Micromonospora chalcea Fungus Yes DSM 43026T DSM, DSM 43116 DSM
Micromonospora chersina Fungus Yes DSM 44151T DSM
Micromonospora citrea Fungus Yes DSM 43903T DSM
Micromonospora coerulea Fungus Yes DSM 43143T DSM
Micromonospora echinaurantiaca Fungus Yes DSM 43904T DSM
Micromonospora echinofusca Fungus Yes DSM 43913T DSM
Micromonospora echinospora Fungus Yes DSM 43036 DSM, DSM 43141 DSM, DSM 43816T DSM
Micromonospora inyonensis Fungus Yes DSM 46123T DSM
Micromonospora peucetica Fungus Yes DSM 43363T DSM
Micromonospora purpureochromogenes Fungus Yes DSM 43814 DSM, DSM 43821T DSM
Micromonospora sagamiensis Fungus Yes DSM 43912T DSM
Micromonospora sp Fungus Yes B260 UFL
Micromonospora viridifaciens Fungus Yes DSM 43909T DSM
Microsporum canis Fungus 2 Yes 30 VML
Microsporum_gypseum[ana]# (Arthroderma_gypseum[teleo]) Fungus 2 Yes RV491_Sep09_B LBK, VML, 26 VML
Mobiluncus curtisii Yes DSM 2711 DSM
Mobiluncus mulieris No null
Mobiluncus sp Yes UR01284_2_11 ERL null
Moellerella wisconsensis Yes DSM 5076T HAM
Moesziomyces bullatus Plant pathogen Fungus Yes 993900665 LBK
Moorella thermoacetica Yes DSM 12797 DSM, DSM 2955 DSM
Moraxella atlantae Aerobic and facultative anaerobic gram- rods, coccobacilli 2 Yes DSM 6999T DSM
Moraxella boevrei Aerobic and facultative anaerobic gram- rods, coccobacilli 2 Yes DSM 14165T DSM, 11_0000213_005_01 LGL
Moraxella bovis Pink eye in cattle Aerobic and facultative anaerobic gram- rods, coccobacilli Cattle 2 Yes DSM 6329 DSM, DSM 6328T DSM, GD56 GDD
Moraxella bovoculi Aerobic and facultative anaerobic gram- rods, coccobacilli Yes DSM 21142T LGL
Moraxella canis Infections in dog bite related wounds Aerobic and facultative anaerobic gram- rods, coccobacilli Dogs Yes DSM 18277T DSM, 10036870_101 USH
Moraxella caprae Aerobic and facultative anaerobic gram- rods, coccobacilli Yes DSM 19149T DSM
Moraxella catahrralis Ear, eye and respiratory infections Aerobic and facultative anaerobic gram- diplococci Mucosal surfaces, eye swabs 2 Yes MB_8374_05 THL, DSM 9143T DSM, DSM 11994 DSM, 15 PIM, 14 PIM, 09016322 MLD, ATCC RVA2_98 CHB
Moraxella cuniculi Aerobic and facultative anaerobic gram- rods, coccobacilli No
Moraxella equi Aerobic and facultative anaerobic gram- rods, coccobacilli Yes DSM 18027T DSM
Moraxella lacunata eye and respiratory tract infections Aerobic and facultative anaerobic gram- rods, coccobacilli Mucosal surfaces, eye swabs 2 Yes DSM 18052T DSM
Moraxella lincolnii Aerobic and facultative anaerobic gram- rods, coccobacilli 2 Yes DSM 19150T DSM, 1I12040543_3e MVD
Moraxella nonliquefaciens Nonpathogenic Aerobic and facultative anaerobic gram- rods, coccobacilli Upper respiratory tract 1 Yes DSM 6360 DSM, DSM 6327T DSM, 16 PIM
Moraxella oblonga Aerobic and facultative anaerobic gram- rods, coccobacilli Yes DSM 17235T DSM
Moraxella osloensis eye and respiratory tract infections Aerobic and facultative anaerobic gram- rods, coccobacilli Mucosal surfaces, eye swabs 2 Yes DSM 6998T DSM, VA_13686_02 19 UKE, DSM 6359 DSM, CS 248_4b BRB, 992100145_1 LBK, 76 PIM, 03_7117605 FHB
Moraxella ovis Aerobic and facultative anaerobic gram- rods, coccobacilli Yes DSM 18075T DSM
Moraxella pluranimalium Aerobic and facultative anaerobic gram- rods, coccobacilli Yes DSM 22804T LGL
Moraxella porci Aerobic and facultative anaerobic gram- rods, coccobacilli No
Moraxella saccharolytica Aerobic and facultative anaerobic gram- rods, coccobacilli No
Moraxella sp Aerobic and facultative anaerobic gram- rods, coccobacilli Yes CS 518_7 BRB
Morganella morganii Yes (E) 21086317_MLD, (PX) 22086121_MLD, 9544_1 CHB, RV_BA_03_A LBK, 451 RLT
Morganella morganii ssp morganii Yes 15284_1 CHB, DSM 30117 DSM, DSM 30164T DSM, DSM 30164T HAM
Morganella morganii ssp sibonii Yes Mb19277_2 CHB, DSM 14850T HAM
Morganella psychrotolerans No null
Mucor circinelloides Fungus Yes RV490_Oct09_04 LBK
Mycobacterium abscessus Aerobic, acid-fast Gram+ Yes 04 TWF, E_09_2006 BSI
Mycobacterium agri Aerobic, acid-fast Gram+ Yes DSM 44515T DSM
Mycobacterium aichiense Aerobic, acid-fast Gram+ No null
Mycobacterium algericum Aerobic, acid-fast Gram+ No
Mycobacterium alvei Aerobic, acid-fast Gram+ No
Mycobacterium aromaticivorans Aerobic, acid-fast Gram+ No null
Mycobacterium arosiense Aerobic, acid-fast Gram+ No
Mycobacterium arupense Aerobic, acid-fast Gram+ No null
Mycobacterium asiaticum Aerobic, acid-fast Gram+ Yes E_05_2007 BSI
Mycobacterium aubagnense Aerobic, acid-fast Gram+ No null
Mycobacterium aurum Aerobic, acid-fast Gram+ No null
Mycobacterium austroafricanum Aerobic, acid-fast Gram+ No null
Mycobacterium avium Aerobic, acid-fast Gram+ Yes TB_RV422_4_02 UKE, 08 TWF, 1476 BSI
Mycobacterium avium ssp avium Aerobic, acid-fast Gram+ Yes ATCC VAR
Mycobacterium avium ssp paratuberculosis Aerobic, acid-fast Gram+ Yes ATCC 19698T VAR
Mycobacterium avium ssp silvaticum Aerobic, acid-fast Gram+ No null
Mycobacterium boenickei Aerobic, acid-fast Gram+ Yes DSM 44677T DSM
Mycobacterium bohemicum Aerobic, acid-fast Gram+ No
Mycobacterium bolletii Aerobic, acid-fast Gram+ No
Mycobacterium botniense Aerobic, acid-fast Gram+ No
Mycobacterium bouchedurhonense Aerobic, acid-fast Gram+ No null
Mycobacterium branderi Aerobic, acid-fast Gram+ No null
Mycobacterium brisbanense Aerobic, acid-fast Gram+ No null
Mycobacterium brumae Aerobic, acid-fast Gram+ No null
Mycobacterium canariasense Aerobic, acid-fast Gram+ No null
Mycobacterium caprae Aerobic, acid-fast Gram+ No
Mycobacterium celatum Aerobic, acid-fast Gram+ Yes DSM 44243T DSM, 3772 BSI, 7268 BSI
Mycobacterium chelonae Aerobic, acid-fast Gram+ Yes E_07_2006 BSI
Mycobacterium chimaera Aerobic, acid-fast Gram+ No null
Mycobacterium chitae Aerobic, acid-fast Gram+ No null
Mycobacterium chlorophenolicum Aerobic, acid-fast Gram+ Yes DSM 43826T DSM
Mycobacterium chubuense Aerobic, acid-fast Gram+ No
Mycobacterium colombiense Aerobic, acid-fast Gram+ No
Mycobacterium conceptionense Aerobic, acid-fast Gram+ Yes DSM 45102T DSM
Mycobacterium confluentis Aerobic, acid-fast Gram+ No null
Mycobacterium conspicuum Aerobic, acid-fast Gram+ No
Mycobacterium cookii Aerobic, acid-fast Gram+ No null
Mycobacterium cosmeticum Aerobic, acid-fast Gram+ No null
Mycobacterium crocinum Aerobic, acid-fast Gram+ No
Mycobacterium diernhoferi Aerobic, acid-fast Gram+ No null
Mycobacterium doricum Aerobic, acid-fast Gram+ No null
Mycobacterium duvalii Aerobic, acid-fast Gram+ No null
Mycobacterium elephantis Aerobic, acid-fast Gram+ No null
Mycobacterium europaeum Aerobic, acid-fast Gram+ No null
Mycobacterium fallax Aerobic, acid-fast Gram+ No null
Mycobacterium farcinogenes Aerobic, acid-fast Gram+ Yes DSM 43637T DSM
Mycobacterium flavescens Aerobic, acid-fast Gram+ No null
Mycobacterium florentinum Aerobic, acid-fast Gram+ No null
Mycobacterium fluoranthenivorans Aerobic, acid-fast Gram+ No null
Mycobacterium fortuitum Aerobic, acid-fast Gram+ Yes BlutK LSM, E_09_2007 BSI
Mycobacterium frederiksbergense Aerobic, acid-fast Gram+ No
Mycobacterium gadium Aerobic, acid-fast Gram+ No null
Mycobacterium gastri Aerobic, acid-fast Gram+ No null
Mycobacterium genavense Aerobic, acid-fast Gram+ No null
Mycobacterium gilvum Aerobic, acid-fast Gram+ No
Mycobacterium goodii Aerobic, acid-fast Gram+ No null
Mycobacterium gordonae Aerobic, acid-fast Gram+ Yes 05 TWF, 0714 BSI, 3090 BSI, 6957 BSI, 6962 BSI, E_11_2007 BSI
Mycobacterium haemophilum Aerobic, acid-fast Gram+ No null
Mycobacterium hassiacum Aerobic, acid-fast Gram+ No null
Mycobacterium heckeshornense Aerobic, acid-fast Gram+ Yes DSM 44428T DSM
Mycobacterium hiberniae Aerobic, acid-fast Gram+ Yes DSM 44241T DSM
Mycobacterium hiberniae Aerobic, acid-fast Gram+ No
Mycobacterium hodleri Aerobic, acid-fast Gram+ Yes DSM 44183T DSM
Mycobacterium holsaticum Aerobic, acid-fast Gram+ No null
Mycobacterium houstonense Aerobic, acid-fast Gram+ No
Mycobacterium immunogenum Aerobic, acid-fast Gram+ No
Mycobacterium insubricum Aerobic, acid-fast Gram+ No null
Mycobacterium interjectum Aerobic, acid-fast Gram+ No
Mycobacterium intermedium Aerobic, acid-fast Gram+ No null
Mycobacterium intracellulare Aerobic, acid-fast Gram+ No null
Mycobacterium kansasii Aerobic, acid-fast Gram+ Yes 0219 BSI, 03 TWF, 0519 BSI, 3155 BSI, 423_D_II_2007 BSI, TB_RV425_2_03 UKE, VAR
Mycobacterium komossense Aerobic, acid-fast Gram+ No null
Mycobacterium kubicae Aerobic, acid-fast Gram+ No null
Mycobacterium kumamotonense Aerobic, acid-fast Gram+ Yes DSM 45093T DSM
Mycobacterium kyorinense Aerobic, acid-fast Gram+ No null
Mycobacterium lacus Aerobic, acid-fast Gram+ Yes DSM 44577T DSM
Mycobacterium lentiflavum Aerobic, acid-fast Gram+ No null
Mycobacterium lepraemurium Aerobic, acid-fast Gram+ No
Mycobacterium litorale Aerobic, acid-fast Gram+ No null
Mycobacterium llatzerense Aerobic, acid-fast Gram+ No
Mycobacterium madagascariense Aerobic, acid-fast Gram+ No null
Mycobacterium mageritense Aerobic, acid-fast Gram+ Yes DSM 44476T DSM
Mycobacterium malmoense Aerobic, acid-fast Gram+ Yes 0205 BSI, 1023 BSI, 127222 BSI
Mycobacterium manitobense Aerobic, acid-fast Gram+ No null
Mycobacterium mantenii Aerobic, acid-fast Gram+ No null
Mycobacterium marinum Aerobic, acid-fast Gram+ Yes E_07_2007 BSI
Mycobacterium marseillense Aerobic, acid-fast Gram+ No
Mycobacterium monacense Aerobic, acid-fast Gram+ No null
Mycobacterium montefiorense Aerobic, acid-fast Gram+ Yes DSM 44602T DSM
Mycobacterium moriokaense Aerobic, acid-fast Gram+ No
Mycobacterium mucogenicum Aerobic, acid-fast Gram+ Yes E_08_2007 BSI
Mycobacterium murale Aerobic, acid-fast Gram+ No null
Mycobacterium nebraskense Aerobic, acid-fast Gram+ No null
Mycobacterium neoaurum Aerobic, acid-fast Gram+ Yes 10w413538 RLH
Mycobacterium neworleansense Aerobic, acid-fast Gram+ No null
Mycobacterium nonchromogenicum Aerobic, acid-fast Gram+ No
Mycobacterium noviomagense Aerobic, acid-fast Gram+ No null
Mycobacterium novocastrense Aerobic, acid-fast Gram+ No null
Mycobacterium obuense Aerobic, acid-fast Gram+ No null
Mycobacterium pallens Aerobic, acid-fast Gram+ No null
Mycobacterium palustre Aerobic, acid-fast Gram+ Yes DSM 44572T DSM
Mycobacterium paraffinicum Aerobic, acid-fast Gram+ No null
Mycobacterium parafortuitum Aerobic, acid-fast Gram+ No null
Mycobacterium parascrofulaceum Aerobic, acid-fast Gram+ No null
Mycobacterium paraseoulense Aerobic, acid-fast Gram+ No null
Mycobacterium parmense Aerobic, acid-fast Gram+ No
Mycobacterium peregrinum Aerobic, acid-fast Gram+ Yes 15 PGM, DSM 43271T DSM
Mycobacterium phlei Aerobic, acid-fast Gram+ Yes DSM 43239T DSM
Mycobacterium phocaicum Aerobic, acid-fast Gram+ No null
Mycobacterium pinnipedii Aerobic, acid-fast Gram+ No null
Mycobacterium porcinum Aerobic, acid-fast Gram+ No null
Mycobacterium poriferae Aerobic, acid-fast Gram+ No
Mycobacterium pseudoshottsii Aerobic, acid-fast Gram+ Yes DSM 45108T DSM
Mycobacterium psychrotolerans Aerobic, acid-fast Gram+ No null
Mycobacterium pulveris Aerobic, acid-fast Gram+ Yes DSM 44222T DSM
Mycobacterium pyrenivorans Aerobic, acid-fast Gram+ No null
Mycobacterium rhodesiae Aerobic, acid-fast Gram+ Yes DSM 44223T DSM
Mycobacterium riyadhense Aerobic, acid-fast Gram+ No
Mycobacterium rufum Aerobic, acid-fast Gram+ No null
Mycobacterium rutilum Aerobic, acid-fast Gram+ No
Mycobacterium salmoniphilum Aerobic, acid-fast Gram+ No null
Mycobacterium saskatchewanense Aerobic, acid-fast Gram+ No
Mycobacterium scrofulaceum Aerobic, acid-fast Gram+ No null
Mycobacterium senegalense Aerobic, acid-fast Gram+ No null
Mycobacterium senuense Aerobic, acid-fast Gram+ No null
Mycobacterium seoulense Aerobic, acid-fast Gram+ Yes DSM 44998T DSM
Mycobacterium septicum Aerobic, acid-fast Gram+ No null
Mycobacterium setense Aerobic, acid-fast Gram+ No null
Mycobacterium sherrisii Aerobic, acid-fast Gram+ No null
Mycobacterium shimoidei Aerobic, acid-fast Gram+ No null
Mycobacterium shinjukuense Aerobic, acid-fast Gram+ No
Mycobacterium shottsii Aerobic, acid-fast Gram+ Yes DSM 45125T DSM
Mycobacterium simiae Aerobic, acid-fast Gram+ Yes 01 TWF, 423_B_I_2007 BSI
Mycobacterium smegmatis Aerobic, acid-fast Gram+ Yes 19 PGM, 19_HI PGM, 3483 BSI, VAR
Mycobacterium sphagni Aerobic, acid-fast Gram+ No null
Mycobacterium stomatepiae Aerobic, acid-fast Gram+ No null
Mycobacterium szulgai Aerobic, acid-fast Gram+ Yes DSM 44166T DSM
Mycobacterium terrae Aerobic, acid-fast Gram+ No
Mycobacterium thermoresistibile Aerobic, acid-fast Gram+ Yes DSM 44167T DSM
Mycobacterium timonense Aerobic, acid-fast Gram+ No
Mycobacterium tokaiense Aerobic, acid-fast Gram+ Yes DSM 44635T DSM
Mycobacterium triplex Aerobic, acid-fast Gram+ No
Mycobacterium triviale Aerobic, acid-fast Gram+ No
Mycobacterium tusciae Aerobic, acid-fast Gram+ No
Mycobacterium vaccae Aerobic, acid-fast Gram+ No
Mycobacterium vanbaalenii Aerobic, acid-fast Gram+ No
Mycobacterium vulneris Aerobic, acid-fast Gram+ No
Mycobacterium wolinskyi Aerobic, acid-fast Gram+ No
Mycobacterium xenopi Aerobic, acid-fast Gram+ Yes 02 TWF, 0690 BSI, 0932 BSI, 22 PGM
Mycoplasma adleri No
Mycoplasma agalactiae No
Mycoplasma agassizii No
Mycoplasma alkalescens Yes 22B10 VLW, NCTC 10135T VLW
Mycoplasma alligatoris No
Mycoplasma alvi No
Mycoplasma amphoriforme No
Mycoplasma anatis No
Mycoplasma anseris No
Mycoplasma arginini Yes 7SR10 VLW, NCTC 10129T VLW
Mycoplasma arthritidis No
Mycoplasma auris No
Mycoplasma bovigenitalium No
Mycoplasma bovirhinis Yes 25B10 VLW
Mycoplasma bovis Yes 86B96 VLW, NCTC 10131T VLW
Mycoplasma bovoculi No
Mycoplasma buccale No
Mycoplasma buteonis No
Mycoplasma californicum No
Mycoplasma canadense No
Mycoplasma canis No NCTC 10146T VLW
Mycoplasma capricolum No
Mycoplasma capricolum ssp capricolum No
Mycoplasma capricolum ssp capripneumoniae No
Mycoplasma caviae No
Mycoplasma cavipharyngis No
Mycoplasma citelli No
Mycoplasma cloacale No
Mycoplasma coccoides No
Mycoplasma collis No
Mycoplasma columbinasale No
Mycoplasma columbinum No
Mycoplasma columborale No
Mycoplasma conjunctivae No
Mycoplasma corogypsi No
Mycoplasma cottewii No
Mycoplasma cricetuli No
Mycoplasma crocodyli No
Mycoplasma cynos No
Mycoplasma dispar No
Mycoplasma edwardii No
Mycoplasma elephantis No
Mycoplasma equigenitalium No
Mycoplasma equirhinis No
Mycoplasma falconis No
Mycoplasma fastidiosum No
Mycoplasma faucium No
Mycoplasma felifaucium No
Mycoplasma feliminutum No
Mycoplasma felis No
Mycoplasma fermentans No
Mycoplasma flocculare No
Mycoplasma gallinaceum Yes 163A08 VLW, NCTC 10183T VLW
Mycoplasma gallinarum No
Mycoplasma gallisepticum Yes 84A10 VLW, NCTC 10151T VLW
Mycoplasma gallopavonis No
Mycoplasma gateae No
Mycoplasma genitalium No
Mycoplasma glycophilum No
Mycoplasma gypis No
Mycoplasma haemocanis No
Mycoplasma haemofelis No
Mycoplasma haemomuris No
Mycoplasma hominis No
Mycoplasma hyopharyngis No
Mycoplasma hyopneumoniae No
Mycoplasma hyorhinis Yes FLR
Mycoplasma hyosynoviae No
Mycoplasma iguanae No
Mycoplasma imitans No
Mycoplasma indiense No
Mycoplasma iners No
Mycoplasma iowae No
Mycoplasma lagogenitalium No
Mycoplasma leachii No
Mycoplasma leonicaptivi No
Mycoplasma leopharyngis No
Mycoplasma lipofaciens No
Mycoplasma lipophilum No
Mycoplasma maculosum No
Mycoplasma meleagridis No
Mycoplasma microti No
Mycoplasma moatsii No
Mycoplasma mobile No
Mycoplasma molare No
Mycoplasma mucosicanis No
Mycoplasma muris No
Mycoplasma mustelae No
Mycoplasma mycoides No
Mycoplasma mycoides ssp capri No
Mycoplasma mycoides ssp mycoides No
Mycoplasma neophronis No
Mycoplasma neurolyticum No
Mycoplasma opalescens No
Mycoplasma orale No
Mycoplasma ovipneumoniae Yes 12SR02 VLW, NCTC 10115T VLW
Mycoplasma ovis No
Mycoplasma oxoniensis No
Mycoplasma penetrans No
Mycoplasma phocae No
Mycoplasma phocicerebrale No
Mycoplasma phocirhinis No
Mycoplasma pirum No
Mycoplasma pneumoniae No
Mycoplasma primatum No
Mycoplasma pullorum Yes 8A10 VLW, NCTC 10187T VLW
Mycoplasma pulmonis No
Mycoplasma putrefaciens No
Mycoplasma salivarium No
Mycoplasma simbae No
Mycoplasma spermatophilum No
Mycoplasma spumans No
Mycoplasma sturni No
Mycoplasma sualvi No
Mycoplasma subdolum No
Mycoplasma suis No
Mycoplasma synoviae No
Mycoplasma testudineum No
Mycoplasma testudinis No
Mycoplasma verecundum No
Mycoplasma wenyonii No
Mycoplasma yeatsii No
Myroides marinus No
Myroides odoratimimus Yes 090623 LBK, LMG 4029T HAM, UR_01389_09 ERL
Myroides odoratus Yes CCM 3296T CCM, CCM 3297 CCM, DSM 2801T HAM
Myroides pelagicus No
Myroides phaeus No
Myroides profundi No
Neisseria animalis Gram-, aerobic diplococci No
Neisseria animaloris Gram-, aerobic diplococci No
Neisseria bacilliformis Gram-, aerobic diplococci Yes 30 PIM, BK1187 EVM, DSM 23338T DSM
Neisseria canis Gram-, aerobic diplococci Yes DSM 18000T DSM
Neisseria caviae Gram-, aerobic diplococci No
Neisseria cinerea Gram-, aerobic diplococci Yes DSM 4630T DSM
Neisseria dentiae Gram-, aerobic diplococci No
Neisseria elongata ssp elongata Gram-, aerobic diplococci Yes DSM 17712T DSM
Neisseria elongata ssp glycolytica Gram-, aerobic diplococci No
Neisseria elongata ssp nitroreducens Gram-, aerobic diplococci Yes DSM 17632T DSM
Neisseria flava Gram-, aerobic diplococci No
Neisseria flavescens Gram-, aerobic diplococci Yes 533 PGM, C1 2 PGM, DSM 17633T DSM
Neisseria gonorrhoeae Gonorrhea Gram-, aerobic diplococci 2 Yes ATCC 49226 THL, a04 PGM, ch012 PGM, i6005 ce PGM, ps601 PGM, sp031 Ce PGM, sp034 PGM
Neisseria iguanae Gram-, aerobic diplococci No
Neisseria lactamica Gram-, aerobic diplococci Yes 79 PGM, DSM 4691T DSM, VA33589_09 ERL
Neisseria macacae Gram-, aerobic diplococci Yes DSM 19175T DSM
Neisseria meningitidis Meningitis Gram-, aerobic diplococci 2 Yes 070309 PGM, 1522 PGM, 1541 PGM, 24086406 MLD, 639 PGM, C1 2 PGM, MB_8295_05 THL, Serogroup_A BRL, Serogroup_W135 BRL, Serogroup_X BRL, Serogroup_Y BRL
Neisseria mucosa Gram-, aerobic diplococci Yes 1591 PGM, DSM 17611T DSM
Neisseria perflava Gram-, aerobic diplococci Yes 1621 PGM, DSM 18009T DSM
Neisseria polysaccharea Gram-, aerobic diplococci Yes 547 PGM
Neisseria shayeganii Gram-, aerobic diplococci No
Neisseria sicca Gram-, aerobic diplococci Yes 110 PGM, 70 PGM, DSM 17713T DSM
Neisseria sp[2] Gram-, aerobic diplococci Yes 0807M15057901 IBS
Neisseria subflava Gram-, aerobic diplococci Yes 1672 PGM, DSM 17610T DSM
Neisseria wadsworthii Gram-, aerobic diplococci No
Neisseria weaveri Gram-, aerobic diplococci Yes DSM 17688T DSM
Neisseria zoodegmatis Gram-, aerobic diplococci Yes 45_A1220 MHH
Nesterenkonia lacusekhoensis No 402 RLT
Nocardia abscessus Yes DSM 44432T DSM
Nocardia acidivorans No
Nocardia africana Yes DSM 44491T DSM
Nocardia alba No
Nocardia altamirensis No
Nocardia amamiensis No
Nocardia anaemiae Yes DSM 44821T DSM
Nocardia aobensis Yes DSM 44805T DSM
Nocardia araoensis Yes DSM 44729T DSM
Nocardia artemisiae No
Nocardia arthritidis Yes DSM 44731T DSM
Nocardia asiatica Yes DSM 44668T DSM
Nocardia asteroides Yes NO 27 HUA, DSM 43757T DSM, DSM 43258 DSM
Nocardia beijingensis No
Nocardia blacklockiae No
Nocardia brasiliensis Yes 251 RLT
Nocardia brevicatena No
Nocardia caishijiensis No
Nocardia callitridis No
Nocardia carnea Yes B334 UFL
Nocardia cerradoensis No
Nocardia coeliaca No
Nocardia concava Yes DSM 44804T DSM
Nocardia coubleae No
Nocardia crassostreae No
Nocardia cummidelens No
Nocardia cyriacigeorgica Yes DSM 44804T DSM
Nocardia elegans Yes DSM 44890T DSM
Nocardia endophytica No
Nocardia exalbida Yes DSM 44883T DSM
Nocardia farcinica Yes DSM 43665T DSM
Nocardia flavorosea No
Nocardia fluminea No
Nocardia gamkensis No
Nocardia globerula No
Nocardia grenadensis No
Nocardia harenae No
Nocardia higoensis Yes DSM 44732T DSM
Nocardia ignorata Yes DSM 44496T DSM
Nocardia inohanensis No
Nocardia iowensis No
Nocardia jejuensis No
Nocardia jiangxiensis No
Nocardia jinanensis No
Nocardia kruczakiae Yes DSM 44877T DSM
Nocardia lijiangensis No
Nocardia mexicana No
Nocardia mikamii No
Nocardia miyunensis No
Nocardia neocaledoniensis No
Nocardia niigatensis Yes DSM 44670T DSM
Nocardia ninae No
Nocardia niwae No
Nocardia nova Yes 10_368938 MVO, DSM 44481T DSM
Nocardia otitidiscaviarum Yes DSM 43242T DSM, VA_01844_09 ERL
Nocardia paucivorans Yes DSM 44386T DSM
Nocardia pigrifrangens No
Nocardia pneumoniae Yes DSM 44730T DSM
Nocardia polyresistens No
Nocardia pseudobrasiliensis No
Nocardia pseudovaccinii No
Nocardia puris No
Nocardia rhamnosiphila No
Nocardia salmonicida Yes DSM 40472T DSM
Nocardia seriolae Yes DSM 44129T DSM
Nocardia shimofusensis No
Nocardia sienata Yes DSM 44766T DSM
Nocardia soli No
Nocardia sp Yes MB_9090_05 THL, N1064 IBS, N133 IBS, N394 IBS
Nocardia speluncae No
Nocardia takedensis No
Nocardia tenerifensis No
Nocardia terpenica No
Nocardia testacea Yes DSM 44765T DSM
Nocardia thailandica Yes DSM 44808T DSM
Nocardia transvalensis Yes DSM 43405T DSM
Nocardia uniformis No
Nocardia vaccinii No
Nocardia vermiculata Yes DSM 44807T DSM
Nocardia veterana Yes RVA1_03 SLT
Nocardia vinacea No
Nocardia wallacei No
Nocardia xishanensis No
Nocardia yamanashiensis Yes DSM 44669T DSM
Nocardioides aestuarii No
Nocardioides agariphilus No
Nocardioides albus No
Nocardioides alkalitolerans No
Nocardioides alpinus No
Nocardioides aquaticus No null
Nocardioides aquiterrae No null
Nocardioides aromaticivorans No null
Nocardioides basaltis No null
Nocardioides bigeumensis No null
Nocardioides caeni No null
Nocardioides caricicola No null
Nocardioides daedukensis No null
Nocardioides daejeonensis No null
Nocardioides daphniae No null
Nocardioides dilutus No null
Nocardioides dokdonensis No null
Nocardioides dubius No null
Nocardioides exalbidus No null
Nocardioides fonticola No null
Nocardioides furvisabuli No null
Nocardioides ganghwensis No null
Nocardioides ginsengagri No null
Nocardioides ginsengisegetis No null
Nocardioides ginsengisoli No null
Nocardioides halotolerans No null
Nocardioides hankookensis No null
Nocardioides humi No null
Nocardioides hungaricus No null
Nocardioides hwasunensis No null
Nocardioides insulae No null
Nocardioides iriomotensis No null
Nocardioides islandensis No null
Nocardioides jensenii Yes DSM 20641T DSM
Nocardioides kongjuensis No null
Nocardioides koreensis No null
Nocardioides kribbensis No null
Nocardioides lentus No null
Nocardioides luteus No
Nocardioides maradonensis No null
Nocardioides marinisabuli No null
Nocardioides marinus No null
Nocardioides mesophilus No null
Nocardioides nitrophenolicus No null
Nocardioides oleivorans No null
Nocardioides panacihumi No null
Nocardioides panacisoli No null
Nocardioides plantarum No null
Nocardioides pyridinolyticus No null
Nocardioides salarius No null
Nocardioides sediminis No null
Nocardioides simplex Yes DSM 20130T DSM
Nocardioides terrae No null
Nocardioides terrigena No null
Nocardioides tritolerans No null
Nocardioides ultimimeridianus No null
Nocardiopsis aegyptia Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No
Nocardiopsis alba Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color Yes DSM 43377T DSM
Nocardiopsis alkaliphila Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No
Nocardiopsis arabia Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No
Nocardiopsis arvandica Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No
Nocardiopsis baichengensis Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis composta Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No
Nocardiopsis dassonvillei Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis dassonvillei ssp. albirubida Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis dassonvillei ssp. dassonvillei Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis exhalans Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis flavescens Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis ganjiahuensis Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis gilva Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis halophila Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis halotolerans Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis kunsanensis Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis listeri Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis litoralis Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis lucentensis Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis metallicus Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis nikkonensis Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis potens Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis prasina Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis quinghaiensis Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis rhodophaea Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis rosea Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis salina Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis sinuspersici Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis synnemataformans Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis trehalosi Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis tropica Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis umidischolae Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis valliformis Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Nocardiopsis xinjiangensis Slow growing, aerobic, Gram+, nonacid-fast, coarsely wrinkled to folded, and white or pink to red in color No null
Novosphingobium acidiphilum Gram- bacteria No null
Novosphingobium aromaticivorans Gram- bacteria Yes DSM 12444T HAM
Novosphingobium hassiacum Gram- bacteria Yes DSM 14552T DSM
Novosphingobium indicum Gram- bacteria No null
Novosphingobium lentum Gram- bacteria Yes DSM 13663T DSM, DSM 13664 DSM
Novosphingobium mathurense Gram- bacteria No
Novosphingobium naphthalenivorans Gram- bacteria Yes DSM 18518T DSM
Novosphingobium nitrogenifigens Gram- bacteria Yes DSM 19370T DSM
Novosphingobium panipatense Gram- bacteria No
Novosphingobium pentaromativorans Gram- bacteria Yes DSM 17173T DSM
Novosphingobium resinovorum Gram- bacteria Yes DSM 10700 HAM, DSM 7478T HAM
Novosphingobium rosa Gram- bacteria Yes DSM 7285T DSM, DSM 7305 DSM, DSM 7313 DSM
Novosphingobium sediminicola Gram- bacteria No
Novosphingobium soli Gram- bacteria No
Novosphingobium stygium Gram- bacteria Yes DSM 12445T DSM
Novosphingobium subterraneum Gram- bacteria Yes DSM 12447T DSM, DSM 12447T HAM
Novosphingobium taihuense Gram- bacteria Yes DSM 17507T DSM
Novosphingobium tardaugens Gram- bacteria Yes DSM 16702T DSM
Ochrobactrum anthropi Yes DSM 20150 DSM, DSM 6882T DSM
Ochrobactrum ciceri No
Ochrobactrum cytisi No
Ochrobactrum daejeonense No
Ochrobactrum gallinifaecis Yes DSM 15295T HAM
Ochrobactrum grignonense Yes DSM 13338T HAM
Ochrobactrum haematophilum No
Ochrobactrum intermedium Yes LMG 3301T HAM
Ochrobactrum lupini No
Ochrobactrum oryzae No
Ochrobactrum pecoris No
Ochrobactrum pituitosum No
Ochrobactrum pseudintermedium No
Ochrobactrum pseudogrignonense No
Ochrobactrum rhizosphaerae No
Ochrobactrum sp[3] Yes 64 RLT, %5B3%5D 454 RLT Ochrobactrum sp. SMI 18-06649 SMI
Ochrobactrum thiophenivorans No
Ochrobactrum tritici Yes DSM 13340T HAM
Odoribacter denticanis No
Odoribacter laneus No
Odoribacter splanchnicus Yes DSM 20712T DSM
Oerskovia enterophila No
Oerskovia jenensis No
Oerskovia paurometabola No
Oerskovia turbata Yes B258 UFL, IMET 7405T HKJ
Ogatea polymorpha Yeast Yes MY00163 11 ERL
Oligella ureolytica Yes DSM 18253T DSM
Oligella urethralis Yes DSM 7531T DSM, UR_01084a_09 ERL
Olsenella profusa Yes P4bue_li7AN USH
Olsenella uli Yes P10bue_li9AN USH, P10flue_li9AN USH
Ornithobacterium rhinotracheale Yes DSM 15997T DSM, 11_00488_01 VAXM, 11_00507_01 VAXM, GD60 GDD null
Paecilomyces lilacinus fungus Yes 85 VML
Paecilomyces variotii fungus Yes RV07_02 21 VML
Paenibacillus aestuarii No
Paenibacillus agarexedens Yes DSM 1479 DSM, DSM 1478 DSM, DSM 1477 DSM, DSM 1475 DSM, DSM 1473 DSM, DSM 1327T DSM
Paenibacillus agaridevorans Yes DSM 1486 DSM, DSM 1485 DSM, DSM 1484 DSM
Paenibacillus alginolyticus Yes DSM 5050T DSM
Paenibacillus algorifonticola No
Paenibacillus alkaliterrae No
Paenibacillus alvei Yes DSM 5560 DSM, DSM 29T DSM, DSM 5557 DSM
Paenibacillus amylolyticus Yes DSM 15211T DSM, DSM 11747T DSM, DSM 11730T DSM
Paenibacillus anaericanus Yes DSM 15890T DSM
Paenibacillus antarcticus No
Paenibacillus apiarius Yes DSM 5582 DSM, DSM 5581T DSM
Paenibacillus assamensis Yes DSM 18201T DSM
Paenibacillus azoreducens Yes DSM 13822T DSM
Paenibacillus azotofixans No
Paenibacillus barcinonensis Yes DSM 15478T DSM
Paenibacillus barengoltzii Yes 8N CTL
Paenibacillus borealis Yes DSM 13188T DSM
Paenibacillus brasilensis Yes DSM 14914T DSM
Paenibacillus camelliae No
Paenibacillus campinasensis No
Paenibacillus castaneae No
Paenibacillus cellulosilyticus No
Paenibacillus cellulositrophicus No
Paenibacillus chibensis Yes DSM 11731T DSM, DSM 11732 DSM, DSM 329 DSM
Paenibacillus chinjuensis Yes DSM 15045T DSM
Paenibacillus chitinolyticus Yes DSM 11030T DSM
Paenibacillus chondroitinus Yes DSM 5051T DSM
Paenibacillus chungangensis No
Paenibacillus cineris Yes DSM 16945T DSM
Paenibacillus contaminans No
Paenibacillus cookii Yes DSM 16944T DSM
Paenibacillus curdlanolyticus Yes DSM 10247T DSM, DSM 10248 DSM
Paenibacillus daejeonensis Yes DSM 15491T DSM
Paenibacillus dendritiformis Yes DSM 18844T DSM
Paenibacillus durus Yes DSM 5976T DSM, DSM 1735 DSM
Paenibacillus edaphicus Yes CIP 105814T CIP
Paenibacillus ehimensis Yes DSM 11029T DSM
Paenibacillus elgii No
Paenibacillus favisporus Yes DSM 17253T DSM
Paenibacillus filicis No
Paenibacillus fonticola No
Paenibacillus forsythiae No
Paenibacillus gansuensis Yes DSM 16968T DSM
Paenibacillus ginsengarvi No
Paenibacillus ginsengihumi No
Paenibacillus glacialis No
Paenibacillus glucanolyticus Yes DSM 5162T DSM, DSM 5188 DSM
Paenibacillus glycanilyticus Yes DSM 17608T DSM
Paenibacillus graminis Yes DSM 15220T DSM
Paenibacillus granivorans No
Paenibacillus harenae No
Paenibacillus hodogayensis No
Paenibacillus humicus No
Paenibacillus hunanensis No
Paenibacillus illinoisensis Yes DSM 11733T DSM, DSM 11734 DSM
Paenibacillus jamilae Yes DSM 13815T DSM
Paenibacillus jilunlii No
Paenibacillus kobensis Yes DSM 10249T DSM, DSM 10250 DSM
Paenibacillus koleovorans No
Paenibacillus konsidensis No
Paenibacillus koreensis No
Paenibacillus kribbensis No
Paenibacillus lactis Yes 9862 CPB, DSM 15596T DSM
Paenibacillus larvae Yes DSM 3615 DSM, DSM 7030T DSM
Paenibacillus lautus Yes DSM 3035T DSM
Paenibacillus lentimorbus No
Paenibacillus macerans Yes DSM 1574 DSM, DSM 24T DSM, DSM 2892 DSM, DSM 357 DSM, IBS_MS_1 IBS
Paenibacillus macquariensis Yes DSM 2T DSM, DSM 489 DSM
Paenibacillus massiliensis Yes DSM 16942T DSM
Paenibacillus mendelii Yes DSM 19248T DSM
Paenibacillus montaniterrae No
Paenibacillus motobuensis Yes DSM 18200T DSM
Paenibacillus mucilaginosus No
Paenibacillus nanensis No
Paenibacillus naphthalenovorans Yes DSM 14203T DSM
Paenibacillus nematophilus Yes DSM 13559T DSM
Paenibacillus odorifer Yes DSM 15391T DSM
Paenibacillus pabuli Yes DSM 3036T DSM
Paenibacillus panacisoli No
Paenibacillus pasadenensis Yes DSM 19293T DSM
Paenibacillus pectinilyticus No
Paenibacillus peoriae Yes DSM 8320T DSM
Paenibacillus phoenicis No
Paenibacillus phyllosphaerae Yes DSM 17399T DSM
Paenibacillus pini No
Paenibacillus pinihumi No
Paenibacillus pocheonensis No
Paenibacillus polymyxa Yes DSM 292 DSM, DSM 356 DSM, DSM 365 DSM, DSM 742 DSM, DSM 740 DSM, DSM 372 DSM, DSM 36T DSM, DSM 741 DSM
Paenibacillus popilliae No
Paenibacillus prosopidis No
Paenibacillus provencensis No
Paenibacillus pueri No
Paenibacillus pueri No
Paenibacillus puldeungensis No
Paenibacillus purispatii No
Paenibacillus residui No
Paenibacillus rhizosphaerae Yes DSM 17254T DSM
Paenibacillus rigui No
Paenibacillus riograndensis No
Paenibacillus sabinae Yes DSM 17841T DSM
Paenibacillus sacheonensis No
Paenibacillus sanguinis No
Paenibacillus septentrionalis No
Paenibacillus sepulcri No
Paenibacillus siamensis No
Paenibacillus soli No
Paenibacillus sonchi No
Paenibacillus sophorae No
Paenibacillus sp Yes 09 CTC, DSM 1352 DSM, DSM 1354 DSM, DSM 1356 DSM, DSM 1481 DSM, DSM 1482 DSM, DSM 1487 DSM, DSM 34 DSM
Paenibacillus sputi No
Paenibacillus stellifer Yes DSM 14472T DSM
Paenibacillus taichungensis No
Paenibacillus taiwanensis Yes DSM 18679T DSM
Paenibacillus tarimensis No
Paenibacillus terrae Yes DSM 15891 DSM
Paenibacillus terrigena No
Paenibacillus thailandensis No
Paenibacillus thiaminolyticus Yes DSM 5711 DSM, DSM 5712 DSM, DSM 5713 DSM, DSM 5748 DSM, DSM 7262T DSM
Paenibacillus tianmuensis No
Paenibacillus timonensis Yes DSM 16943T DSM
Paenibacillus tundrae No
Paenibacillus turicensis Yes DSM 14349T DSM
Paenibacillus uliginis No
Paenibacillus urinalis Yes 48 RLT, N235M17_QSA IBS
Paenibacillus validus Yes DSM 3037T DSM, DSM 5395 DSM, DSM 6390 DSM, DSM 6544 DSM, DSM 6545 DSM
Paenibacillus wooponensis No
Paenibacillus woosongensis No
Paenibacillus wynnii Yes DSM 18334T DSM
Paenibacillus xinjiangensis Yes DSM 16970T DSM
Paenibacillus xylanexedens No
Paenibacillus xylanilyticus Yes DSM 17255T DSM
Paenibacillus xylanisolvens No
Paenibacillus zanthoxyli Yes DSM 18202T DSM
Pandoraea apista Yes DSM 16535T DSM
Pandoraea faecigallinarum No
Pandoraea norimbergensis Yes DSM 11628T HAM
Pandoraea oxalativorans No
Pandoraea pnomenusa Yes DSM 16536T DSM
Pandoraea pulmonicola Yes DSM 16583T DSM
Pandoraea sputorum No DSM 21091T DSM
Pandoraea sp[2] Yes 65 RLT
Pandoraea sp[5] Yes 40530_09 ERL
Pandoraea thiooxydans No
Pandoraea vervacti No
Pannonibacter phragmitetus Yes LMG 5414 HAM, LMG 5430 HAM
Pantoea agglomerans Yes CCM 4412 CCM, CCM 4413 CCM, DSM 3493T DSM, DSM 3493T HAM, IMV 8456_2406 PAH, IMV 8606 PAH, CCM 298 CCM, CCM 2406 CCM, BK433 EVM
Pantoea allii No
Pantoea ananatis Yes LMG 2676 PAH, LMG 2665T PAH, DSM 17873T HAM, 42 PIM
Pantoea anthophila No
Pantoea brenneri No
Pantoea calida Yes DSM 22759T DSM null
Pantoea conspicua No
Pantoea cypripedii No
Pantoea deleyi No
Pantoea dispersa No UR1131_1_10 ERL, UR1131_2_10 ERL
Pantoea eucalypti No
Pantoea eucrina No
Pantoea gaviniae Yes DSM 22758T DSM null
Pantoea septica Yes 120806 01 LBK
Pantoea sp Yes 110 PIM
Pantoea stewartii ssp indologenes Yes LMG 2632T HAM
Pantoea stewartii ssp stewartii Yes LMG 2715T PAH, DSM 30176T HAM
Pantoea terrea Yes DSM 13701T HAM Synonym Tatumella terrea
Pantoea vagans No
Parabacteroides distasonis Yes 53181 PNU, DSM 20701T DSM, HU35718_3 PNU, HU36220 PNU, HU41816_4 PNU, RV 412_0209_5 LBK, RV_00005_09 ERL, SW26 PNU
Parabacteroides goldsteinii Yes BB02 PNU, BB28 PNU, DSM 19448T DSM
Parabacteroides gordonii No
Parabacteroides johnsonii Yes DSM 18315T DSM
Parabacteroides merdae No
Paracoccus aestuarii No
Paracoccus alcaliphilus No
Paracoccus alkenifer No
Paracoccus aminophilus No
Paracoccus bengalensis No
Paracoccus caeni No
Paracoccus carotinifaciens No
Paracoccus chinensis No
Paracoccus denitrificans Yes B621 UFL, DSM 6392 DSM
Paracoccus fistulariae No
Paracoccus haeundaensis No
Paracoccus halophilus No
Paracoccus homiensis No
Paracoccus isoporae No
Paracoccus kocurii No
Paracoccus kondratievae No
Paracoccus koreensis No
Paracoccus marcusii No
Paracoccus marinus No
Paracoccus methylutens No
Paracoccus niistensis No
Paracoccus pantotrophus No
Paracoccus saliphilus No
Paracoccus seriniphilus No
Paracoccus solventivorans No
Paracoccus sphaerophysae No
Paracoccus stylophorae No
Paracoccus sulfuroxidans No
Paracoccus thiocyanatus No
Paracoccus versutus Yes B352 UFL, B515 UFL
Paracoccus yeei Yes 08526023 MCU, 09506500 MCU, 09551059 MCU, 992100331 LBK, CS 495_17 BRB null
Paracoccus zeaxanthinifaciens No
Parascardovia denticolens Yes P10flue_re5AN USH
Parengyodontium album Eye and cutaneous infections. Fungaemia. Endocarditis. Fungus Environment, soil 1 No NO CBS 368.72 HKU CBS 504.83 HKU CBS 570.71 HKU CBS 836.71 HKU CBS 121919 HKU HKU48 HKU IHEM 4198 HKU NRRL 2312 HKU UAMH 1441 HKU UAMH 4512 HKU UAMH 8313 HKU UAMH 9836 HKU UAMH 10043 HKU UAMH 11234 HKU, CBS 368.72 HKU, CBS 504.83 HKU, CBS 570.71 HKU, CBS 836.71 HKU, CBS 121919 HKU, HKU48 HKU, IHEM 4198 HKU, NRRL 2312 HKU, UAMH 1441 HKU, UAMH 4512 HKU, UAMH 8313 HKU, UAMH 9836 HKU, UAMH 10043 HKU, UAMH 11234 HKU Synonym: Engyodontium album
Parvimonas micra Yes CCM 3776 CCM, DSM 20468T DSM, P10bue_li10AN USH, P10bue_li2AN USH, P10bue_li5AN USH, P10flue_li2AN USH, P6flue_re1AN USH null
Pasteurella aerogenes Yes DSM 10153T DSM
Pasteurella bettyae Yes CCUG 26994 CCUG, CCUG 46013 CCUG, CCUG 55370 CCUG, DSM 23000T DSM null
Pasteurella caballi No
Pasteurella canis Yes 26 PIM, SO_02063_09 ERL, VA_01363_3_09 ERL
Pasteurella dagmatis Yes VA_01363_1_09 ERLV176 MCRF, V620 MCRF, V673 MCRF, V779 MCRF null
Pasteurella langaaensis No
Pasteurella lymphangitidis No
Pasteurella mairii Yes DSM 17480T DSM
Pasteurella multocida Yes A129_06 FLR, A01_04 FLR, A144_00 FLR, A244_07 FLR, A52_02 FLR, DSM 5281 DSM, DSM 5282 DSM, FI FLR, besSt7 THL
Pasteurella multocida ssp gallicida No
Pasteurella multocida ssp multocida Yes DSM 16031T DSM
Pasteurella multocida ssp septica No
Pasteurella skyensis No
Pasteurella stomatis Yes V634 MCRF, V665 MCRF null
Pasteurella testudinis No
Pectobacterium atrosepticum Yes DSM 18077T HAM, NB 1526 PAH
Pectobacterium betavasculorum Yes DSM 18076T HAM, NB 2122 PAH
Pectobacterium cacticida Yes CFBP 3628T MMG
Pectobacterium carnegieana No
Pectobacterium carotovorum ssp carotovorum Yes NB PM2 PAH
Pectobacterium carotovorum ssp odoriferum Yes NB 1892 PAH, LMG 5863T HAM
Pectobacterium cypripedii Yes DSM 3873T HAM
Pectobacterium rhapontici No
Pectobacterium wasabiae Yes DSM 18074T HAM
Pediococcus acidilactici Yes DSM 20238 DSM
Pediococcus argentinicus No
Pediococcus cellicola No
Pediococcus claussenii No
Pediococcus damnosus No
Pediococcus ethanolidurans No
Pediococcus inopinatus No
Pediococcus lolii No
Pediococcus parvulus No
Pediococcus pentosaceus Yes 091015_01 LBK, 161 RLT, AL908877_BK14924 UKH, DSM 20206 DSM
Pediococcus siamensis No
Pediococcus stilesii No
Pelomonas saccharophila Yes DSM 654T DSM
Pelomonas sp Yes %5B3%5D CS 525_1 BRB
Penicillium camemberti fungus Yes RV490_Oct09_03 LBK
Penicillium chrysogenum fungus Yes DSM 895 HED
Penicillium sp fungus Yes Isolat S2 HED, Isolat G5 HED
Peptococcus niger Yes 458 RLT
Peptoniphilus asaccharolyticus Yes DSM 20463T DSM
Peptoniphilus gorbachii Yes VA22133_12 ERL null
Peptoniphilus harei Yes 06_622 IBS, 08_570 IBS, DSM 10020T DSM, DSM 10021 DSM null
Peptoniphilus indolicus Yes DSM 20464T DSM, 455 RLT null
Peptoniphilus ivorii Yes DSM 10022T DSM
Peptoniphilus lacrimalis No
Peptoniphilus methioninivorax No
Peptoniphilus olsenii No
Peptoniphilus sp Yes 110706_K3 LUMC
Peptostreptococcus anaerobius Yes DSM 20357 DSM, DSM 2949T DSM, HU28371_2 PNU, HU33518_2 PNU
Peptostreptococcus russellii No
Peptostreptococcus sp Yes 16 RLT
Peptostreptococcus stomatis No
Phenylobacterium koreense Yes 404 RLT
Phoma exigua ssp exigua fungus Yes CBS 431_74 CBS
Phoma glomerata fungus Yes DSM 62905 HED
Phoma herbarum fungus Yes DSM 63184 HED
Photobacterium angustum No
Photobacterium aphoticum No
Photobacterium aplysiae No
Photobacterium aquimaris No
Photobacterium damselae ssp damselae Yes CDC 2227_81 EGS, DSM 7482T HAM
Photobacterium damselae ssp piscicida Yes ATCC 29690 EGS, PC846_1 EGS
Photobacterium frigidiphilum No
Photobacterium gaetbulicola No
Photobacterium ganghwense No
Photobacterium halotolerans No
Photobacterium iliopiscarium Yes DSM 9896T HAM
Photobacterium indicum No
Photobacterium jeanii No
Photobacterium kishitanii No
Photobacterium leiognathi No
Photobacterium lipolyticum No
Photobacterium lutimaris No
Photobacterium phosphoreum No
Photobacterium profundum No
Photobacterium rosenbergii No
Photobacterium swingsii No
Photorhabdus asymbiotica ssp asymbiotica Yes DSM 15149T HAM
Photorhabdus asymbiotica ssp australis Yes DSM 17609T HAM
Photorhabdus luminescens ssp akhurstii Yes DSM 15138T HAM
Photorhabdus luminescens ssp caribbeanensis No
Photorhabdus luminescens ssp hainanensis No
Photorhabdus luminescens ssp kayaii Yes DSM 15194T HAM
Photorhabdus luminescens ssp klenii No
Photorhabdus luminescens ssp laumondii Yes DSM 15139T HAM
Photorhabdus luminescens ssp luminescens Yes DSM 3368T HAM
Photorhabdus luminescens ssp thracensis No
Photorhabdus temperata ssp cinerea No
Photorhabdus temperata ssp khanii No
Photorhabdus temperata ssp stackebrandtii No
Photorhabdus temperata ssp tasmaniensis No
Photorhabdus temperata ssp temperata Yes DSM 14550T HAM
Photorhabdus temperata ssp thracensis Yes DSM 15199T HAM
Phytobacter diazotrophicus Can cause sepsis No SMI 843 SMI
Pichia cactophila Yeast (fungus) Yes CBS 620 CBS, CBS 6926T CBS, VA_12214_09 ERL
Pichia farinosa Yeast (fungus) Yes DSM 3316T DSM
Pichia farinosa Yeast (fungus) Yes DSM 70362 DSM
Pichia holstii Yeast (fungus) Yes DSM 70764 DSM
Pichia kluyveri Yes MY890_09 ERL
Pichia manshurica Yeast (fungus) Yes 03_436 LBK
Pichia methylivora Yeast (fungus) Yes DSM 2148T DSM
Pichia pseudocactaophila Yeast Yes CBS 6929T CBS
Pigmentiphaga daeguensis Yes 64 PIM
Pigmentiphaga kullae No
Pigmentiphaga litoralis No
Plesiomonas shigelloides Yes CCM 1991 CCM, CCM 5860 CCM, CCM 1996 CCM, DSM 8224T HAM, DSM 8224T DSM
Porphyromonas asaccharolytica Yes 29_644 IBS
Porphyromonas bennonis No
Porphyromonas cangingivalis No null
Porphyromonas canoris No null
Porphyromonas cansulci No
Porphyromonas catoniae No
Porphyromonas circumdentaria No null
Porphyromonas crevioricanis No null
Porphyromonas endodontalis No null
Porphyromonas gingivalis Yes CCM 3985 CCM, DSM 20709T DSM
Porphyromonas gingivicanis No null
Porphyromonas gulae Yes DSM 15663T DSM
Porphyromonas levii Yes 1347 D337 AHVLA
Porphyromonas macacae Yes 110324_35 PNU null
Porphyromonas salivosa No
Porphyromonas somerae No null
Porphyromonas sp Yes 110706_K3 LUMC null
Porphyromonas uenonis No
Pragia fontium Yes DSM 5563T HAM
Prevotella albensis No null
Prevotella amnii Yes 407 RLT null
Prevotella aurantica No null
Prevotella baroniae Yes HU30410_3 PNU, 110706_A3 LUMC
Prevotella bergensis Yes DSM 17361T DSM
Prevotella bivia Yes 0807M220682 IBS, DSM 20514T DSM, HU26382 PNU, HU33416_4 PNU, HU33518_4 PNU, HU44067_1 PNU, HU51442_4 PNU
Prevotella brevis No null
Prevotella bryantii No null
Prevotella buccae Yes DSM 20615 DSM_2, HU21568_4 PNU, HU28914_4 PNU, HU29415 PNU, HU47210_2 PNU, IBS_MS_33 IBS
Prevotella buccalis Yes DSM 20616T DSM, 110706_K5 LUMC null
Prevotella copri No
Prevotella corporis Yes DSM 18810T DSM
Prevotella dentalis No null
Prevotella dentasini No
Prevotella denticola Yes 100617_13 PNU, 110706_H6 LUMC, 110706_H7 LUMC, 110706_H8 LUMC, 110706_I6 LUMC null
Prevotella disiens Yes DSM 20516T DSM, HU28371_5 PNU, HU28371_6 PNU
Prevotella enoeca No
Prevotella falsenii No null
Prevotella fusca No null
Prevotella heparinolytica No null
Prevotella histicola Yes P9flue_17_4AN USH
Prevotella intermedia Yes DSM 20706T DSM
Prevotella loescheii No null
Prevotella maculosa Yes DSM 19339T DSM
Prevotella marshii No null
Prevotella melaninogenica Yes DSM 7089T DSM, IBS_MS_43 IBS, 110706_C3 LUMC, 110706_G7 LUMC
Prevotella micans No
Prevotella multiformis No null
Prevotella multisaccharivorax Yes DSM 17128T DSM
Prevotella nanceiensis Yes DSM 19126T DSM, IBS_MS_20 IBS
Prevotella nigrescens Yes DSM 13386T DSM, P9flue_16_2AN USH null
Prevotella oralis Yes DSM 20702T DSM
Prevotella oris Yes DSM 18711T DSM, 110706_D3 LUMC
Prevotella oulora No
Prevotella oulorum Yes 110706_K9 LUMC null
Prevotella pallens Yes DSM 18710T DSM, VA20903_1_10 ERL, 110706_D4 LUMC, P10bue_re3AN USH null
Prevotella paludivivens No
Prevotella pleuritidis No
Prevotella ruminicola No null
Prevotella saccharolytica No null
Prevotella salivae Yes DSM 15606T DSM
Prevotella scopos No null
Prevotella shahii Yes DSM 15611T DSM
Prevotella sp. Yes 176 RLT
Prevotella stercorea Yes DSM 18206T DSM
Prevotella tannerae No null
Prevotella timonensis No
Prevotella veroralis No null
Prevotella zoogleoformans No
Propionibacterium acidifaciens Yes VA06504_11 ERL null
Propionibacterium acidipropionici Yes DSM 20272 DSM, DSM 20273 DSM, DSM 4900T DSM
Propionibacterium acnes Yes 0807M23067302 IBS, 0807M14010701 IBS, 113 PIM, 169 RLT, 27_338 IBS, DSM 16379 DSM, RV 412_0209_6_2 LBK, DSM 1897T DSM, 15614 PNU, 19708 PNU, 20218 PNU, 80329 PNU, CS 505_1 BRB, DSM 1897T BRB, P10flue_re7AN USH
Propionibacterium australiense Yes DSM 15818T DSM
Propionibacterium avidum Yes 91 PIM, DSM 4901T DSM, 339 RLT, VA7144_11 ERL
Propionibacterium cyclohexanicum Yes DSM 16859T DSM
Propionibacterium freudenreichii ssp freudenreichii Yes DSM 20271T DSM
Propionibacterium freudenreichii ssp shermanii Yes DSM 20270 DSM, DSM 4902T DSM
Propionibacterium granulosum Yes 122 RLT, DSM 20458 DSM, DSM 20700T DSM, VA_01782_09 ERL
Propionibacterium jensenii Yes DSM 20274 DSM, DSM 20278 DSM, DSM 20279 DSM, DSM 20535T DSM
Propionibacterium microaerophilum Yes DSM 13435T DSM
Propionibacterium propionicum Yes DSM 43307T DSM
Propionibacterium propionicus No
Propionibacterium sp[2] Yes 0424_0694_LM IBS, 46 RLT, VA04653_09 ERL, 53304 PNU, 86157 PNU, VA06196_1_10 ERL, VA06196_2_10 ERL null
Propionibacterium thoenii Yes DSM 20276T DSM, DSM 20277 DSM
Propioniferax innocua Yes DSM 8251T DSM
Propionimicrobium lymphophilum Yes DSM 4903T DSM, UR01284_1_11 ERL null
Proteus hauseri Facultative anaerobic, Gram- rods, motile Human intestinal tract, soil, water, plants Yes DSM 14437T DSM, DSM 14437T HAM, DSM 30118 DSM
Proteus mirabilis Urinary tract infections Facultative anaerobic, Gram- rods, motile Human intestinal tract, soil, water, plants Yes 13210_1 CHB, DSM 788 DSM, DSM 50903 DSM, DSM 46227 DSM, DSM 30115 DSM, DSM 18254 DSM, 9482_2 CHB, (PX) 22086112 MLD, RV412_A1_2010_06b LBK
Proteus myxofaciens Facultative anaerobic, Gram- rods, motile Yes DSM 4482T HAM, DSM 4482T DSM Synonym Cosenzaea myxofasciens
Proteus penneri Urinary tract infections Facultative anaerobic, Gram- rods, motile Human intestinal tract, soil, water, plants Yes DSM 4544T DSM
Proteus vulgaris Urinary tract infections Facultative anaerobic, Gram- rods, motile Human intestinal tract, soil, water, plants Yes DSM 46228 DSM, DSM 3265 DSM, DSM 30119 DSM, DSM 13625 DSM, DSM 13387NT HAM, B156 UFL, (PX) 22086129 MLD
Prototheca wickerhamii Alga Yes w VML
Prototheca zopfii Alga No
Providencia alcalifaciens Yes CCM 5616 CCM, DSM 30120T DSM
Providencia burhodogranariea No
Providencia heimbachae Yes DSM 3591T HAM
Providencia rettgeri Yes 20837_2 CHB, CCM 4504 CCM, CCM 5617 CCM, DSM 1131 DSM, DSM 46592 DSM, DSM 46264 DSM, DSM 4542T DSM, CCM 5618 CCM
Providencia rustigianii Yes DSM 4541T HAM
Providencia sneebia No
Providencia stuartii Yes DSM 46263 DSM, DSM 4539T HAM, 405 RLT
Providencia vermicola Yes DSM 17385T HAM
Pseudacidovorax intermedius Yes 464 RLT, 465 RLT, 466 RLT null
Pseudochrobactrum asaccharolyticum Yes 6 RLT
Pseudochrobactrum kiredjianiae No
Pseudochrobactrum lubricantis No null
Pseudochrobactrum saccharolyticum No
Pseudoclavibacter caeni No
Pseudoclavibacter chungangensis No
Pseudoclavibacter helvolus Yes DSM 20419T DSM
Pseudoclavibacter soli No null
Pseudoclavibacter sp Yes DSM 17450 DSM, DSM 17449 DSM
Pseudomonas abietaniphila Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 106708T HAM
Pseudomonas aeruginosa Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes 19955_1 CHB, 8147_2 CHB, A07_08_Pudu FLR, DSM 50071T HAM, DSM 1117 DSM, ATCC 27853 THL ATCC_27853_SMI
Pseudomonas agarici Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 11810T HAM
Pseudomonas alcaligenes Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 50342T HAM, 4_3_A TUB
Pseudomonas alcaliphila Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 17744T LGL null
Pseudomonas amygdali Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas anguilliseptica pathogenic to fish Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Isolated from water and fish Yes DSM 12111T HAM
Pseudomonas antarctica Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 15318T HAM
Pseudomonas argentinensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas arsenicoxydans Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas asplenii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 2137T HAM
Pseudomonas avellanae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 11809T DSM
Pseudomonas azotifigens Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 17556T LGL null
Pseudomonas azotoformans Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 106744T HAM
Pseudomonas baetica Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas balearica Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes B397 UFL, DSM 6083T HAM
Pseudomonas bauzanensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas benzenivorans Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas beteli Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas borbori Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas boreopolis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 979T HAM
Pseudomonas brassicacearum Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 13227T HAM
Pseudomonas brenneri Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 106646T HAM
Pseudomonas caeni Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas cannabina Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas carboxydohydrogena Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas caricapapayae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 2152T HAM
Pseudomonas cedrina ssp cedrina Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 105541T HAM
Pseudomonas cedrina ssp fulgida Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas chlororaphis ssp aurantiaca Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 106718T HAM
Pseudomonas chlororaphis ssp aureofaciens Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas chlororaphis ssp chlororaphis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 50083T HAM
Pseudomonas chlororaphis ssp piscium Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas cichorii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 50259T HAM
Pseudomonas cissicola Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas citronellolis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes 993700254 LBK, DSM 50332T HAM
Pseudomonas composti Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas congelans Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 14939T HAM
Pseudomonas corrugata Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 7228T HAM
Pseudomonas costantinii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas cremoricolorata Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas cuatrocienegasensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas deceptionensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas delhiensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas duriflava Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas extremaustralis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas extremorientalis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 15824T HAM
Pseudomonas ficuserectae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas flavescens Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 12071T HAM
Pseudomonas flectens Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas fluorescens Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes B148 UFL, 06_1151 EGS, DSM 50090T HAM
Pseudomonas fluorescens_Group Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes 5 PIM
Pseudomonas fragi Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 3456T HAM
Pseudomonas frederiksbergensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 13022T HAM
Pseudomonas fulva Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 11722T HAM, 013_W30 NFI
Pseudomonas fuscovaginae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 7231T HAM
Pseudomonas gelidicola Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas geniculata Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas gessardii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 105469T HAM
Pseudomonas graminis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 11363T HAM
Pseudomonas grimontii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 106645T HAM
Pseudomonas guineae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas halophila Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas hibiscicola Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas hydrocarboxydans Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas indica Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 14015T HAM
Pseudomonas japonica Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas jessenii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 105274T HAM
Pseudomonas jinjuensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 21316T HAM
Pseudomonas kilonensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 13647T HAM
Pseudomonas knackmussii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas koreensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 21318T HAM, 2_2 TUB, 037_W01 NFI
Pseudomonas libanensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 105460T HAM
Pseudomonas lini Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas litoralis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas lundensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 6252T HAM
Pseudomonas lurida Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas lutea Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 21974T HAM
Pseudomonas luteola Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes VA_00501_09 ERL, DSM 6975T HAM, 0807M14008901 IBS
Pseudomonas mandelii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 105273T HAM
Pseudomonas marginalis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 13124T HAM
Pseudomonas marincola Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas mediterranea Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas meliae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas mendocina can cause opportunistic nosocomial (hospital-acquired) infections Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase occurs in water and soil, Yes DSM 50017T HAM
Pseudomonas meridiana Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas migulae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 105470T HAM
Pseudomonas mohnii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas monteilii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes 044_W06 NFI, DSM 14164T HAM, 041_W10 NFI, 035_W14 NFI, 025_W23 NFI, 014_W29 NFI
Pseudomonas moorei Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas moraviensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas mosselii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 105259T HAM
Pseudomonas mucidolens Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 2223T HAM
Pseudomonas nitroreducens Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 20221T HAM, DSM 14399T HAM
Pseudomonas oleovorans Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 1045T HAM, B396 UFL, 062_Galv10 NFI
Pseudomonas orientalis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 105540T HAM
Pseudomonas oryzihabitans Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 6835T HAM
Pseudomonas otitidis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes 18 PIM
Pseudomonas pachastrellae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas palleroniana Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas panacis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas panipatensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 21819T LGL null
Pseudomonas parafulva Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas pelagia Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas peli Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas peli Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas pertucinogena Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 1874T HAM
Pseudomonas pictorum Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 981T HAM
Pseudomonas plecoglossicida Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 15088T HAM, 042_W03 NFI, 027_W28 NFI, 023_W22 NFI
Pseudomonas poae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 14936T HAM
Pseudomonas pohangensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 17875T DSM
Pseudomonas proteolytica Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 15321T HAM
Pseudomonas pseudoalcaligenes ssp pseudoalcaligenes Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 50188T HAM
Pseudomonas psychrophila Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas psychrotolerans Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas putida Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes B404 UFL, B409 UFL, B402 UFL, B401 UFL, B400 UFL, B342T UFL, B320 UFL, B319 UFL, B318 UFL, B410 UFL, B411 UFL, B524 UFL, B535 Mut_of_B534 UFL, B565 UFL, DSM 291T HAM, DSM 50198 HAM, Mu15117_1 CHB, B317 UFL, B223 UFL, ATCC 49128 THL, 039_W07 NFI, DSM 3226 DSM null
Pseudomonas putida_Group Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes 53 PIM, 7 PIM
Pseudomonas reinekei Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas resinovorans Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 2274T HAM
Pseudomonas rhizosphaerae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 21640T HAM
Pseudomonas rhodesiae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 14020T HAM
Pseudomonas sabulinigri Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas salomonii null Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas saponiphila Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas savastanoi ssp savastanoi Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 2209T HAM, LMG 5011 HAM
Pseudomonas segetis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 18913T DSM
Pseudomonas seleniipraecipitans null Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas simiae null Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas sp Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes B627 UFL, B538 UFL, B153 UFL, 107_Neb26 NFI, 057_Galv13 NFI, 01_12605128 MVK, 10w374819 RLH
Pseudomonas sp[2] Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes 991600314 LBK
Pseudomonas straminea Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 106745T HAM
Pseudomonas stutzeri rare pathogen Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Ubiquitous in soil and water Yes DSM 5190T HAM, 040_W09 NFI, 043_W05 NFI, B367 UFL, BK_02099_09 ERL, DSM 13592 HAM, V319 MCRF
Pseudomonas synxantha Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 18928T DSM
Pseudomonas syringae ssp syringae Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 6693 HAM, LMG 1247T HAM
Pseudomonas taeanensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas taetrolens Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 2336T HAM
Pseudomonas taiwanensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas thermotolerans Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 14292T HAM
Pseudomonas thivervalensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 13194T HAM
Pseudomonas tolaasii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 2342T HAM
Pseudomonas toyotomiensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas tremae null Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas trivialis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 14937T HAM
Pseudomonas tuomuerensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas umsongensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes LMG 21317T HAM
Pseudomonas vancouverensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes CIP 106707T HAM
Pseudomonas veronii Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 11331T HAM, B561 UFL, B560 UFL, B559 UFL
Pseudomonas viridiflava Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 11124T HAM
Pseudomonas vranovensis null Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No null
Pseudomonas xanthomarina Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase Yes DSM 18231T LGL
Pseudomonas xiamenensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudomonas xinjiangensis Gram-, rods, motile, aerobic, non spore forming, postive catalase and oxidase No
Pseudonocardia hydrocarbonoxydans Yes DSM 43281T DSM
Pseudoxanthomonas broegbernensis No
Pseudoxanthomonas daejeonensis No
Pseudoxanthomonas dokdonensis No
Pseudoxanthomonas indica No
Pseudoxanthomonas japonensis No
Pseudoxanthomonas kalamensis No
Pseudoxanthomonas kaohsiungensis Yes DSM 17583T DSM
Pseudoxanthomonas koreensis No
Pseudoxanthomonas mexicana No
Pseudoxanthomonas sacheonensis No
Pseudoxanthomonas spadix Yes DSM 18855T DSM
Pseudoxanthomonas suwonensis No
Pseudoxanthomonas taiwanensis No
Pseudoxanthomonas yeongjuensis No
Pseudozyma aphidis Fungus Yes DSM 70725T DSM
Psychrobacillus insolitus Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 5T DSM
Psychrobacillus psychrodurans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 11713T DSM
Psychrobacillus psychrotolerans Gram+, rod shaped obligate aerobes or facultative naaerobes, produce oval endospores 1 Yes DSM 11706T DSM
Psychrobacter lutiphocae Yes UGV 4123 UGV, UGV 4125 UGV
Psychrobacter sp Yes LB_101250a_09 ERL
Pullulanibacillus naganoensis Yes DSM 10191T DSM
Rahnella aquatilis Yes CCM 4086 CCM, DSM 30078 HAM, DSM 4594T HAM
Ralstonia insidiosa Nonpathogenic 1 Yes 029_W16 NFI, 116 RLT, 39x PGM
Ralstonia mannitolilytica Yes DSM 17512T DSM
Ralstonia pickettii Infections in patiens that undergo trachotomy Soil samples 1 Yes 21323_1 CHB
Ralstonia solanacearum Nonpathogenic Plants 1 No
Ralstonia sp Yes B484 UFL
Ralstonia syzygii Yes DSM 7385T DSM
Raoultella electrica Gram-, oxidase neg, aerobic, non motile and facultative anaerobic rods. 2 No
Raoultella ornithinolytica Gram-, oxidase neg, aerobic, non motile and facultative anaerobic rods. Plants, soil and water samples 2 Yes DSM 7464T HAM, MB_18887 CHB, MHNC_19_3 ERL, MHNC_46_4 ERL, MHNC_54_1 ERL, MHNC_57_7 ERL, UR00558_09 ERL, UR01120_09 ERL, VA00837_09 ERL, VA10895_09 ERL null
Raoultella planticola Gram-, oxidase neg, aerobic, non motile and facultative anaerobic rods. Plants, soil and water samples 2 Yes DSM 3069T DSM, DSM 4617 DSM, MHNC_28_1 ERL, MHNC_SB2787 ERL, VA04253_09 ERL, VA3440_3_09 ERL
Raoultella terrigena Gram-, oxidase neg, aerobic, non motile and facultative anaerobic rods. Plants, soil and water samples 2 Yes DSM 2687T DSM, DSM 7331 DSM, DSM 7333 DSM, VA12423_10 ERL, VA5551_09 ERL
Rathayibacter caricis Gram+, aerobic coryneform bacteria No
Rathayibacter festucae Gram+, aerobic coryneform bacteria No
Rathayibacter iranicus Gram+, aerobic coryneform bacteria No
Rathayibacter rathayi Gram+, aerobic coryneform bacteria Yes DSM 7485T DSM
Rathayibacter toxicus Gram+, aerobic coryneform bacteria No
Rathayibacter tritici null Gram+, aerobic coryneform bacteria null No null
Rheinheimera aquatica Gram-,rods Environmental samples 1 No
Rheinheimera aquimaris Gram-,rods Environmental samples 1 No
Rheinheimera baltica Gram-,rods Environmental samples 1 No
Rheinheimera chironomi Gram-,rods Environmental samples 1 No
Rheinheimera nanhaiensis Gram-,rods Environmental samples 1 No
Rheinheimera pacifica Gram-,rods Environmental samples 1 No
Rheinheimera perlucida Gram-,rods Environmental samples 1 No
Rheinheimera soli Gram-,rods Environmental samples 1 Yes 3_1 TUB
Rheinheimera tangshanensis Gram-,rods Environmental samples 1 No
Rheinheimera texasensis Gram-,rods Environmental samples 1 No
Rhizobium aggregatum Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium alamii Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium alkalisoli Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium borbori Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium cellulosilyticum Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium daejeonense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium endophyticum Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium etli Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium fabae Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium galegae Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium gallicum Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium giardinii Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium hainanense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium herbae Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium huautlense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium indigoferae Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium larrymoorei Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium leguminosarum Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium leucaenae Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium loessense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium lupini Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium lusitanum Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium mesosinicum Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium miluonense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium mongolense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium multihospitium Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium oryzae Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium phaseoli Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium pisi Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium pseudoryzae Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium pusense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium radiobacter Gram-, aerobic rods. Soil, plant samples 1 Yes 994000124 LBK, B177 UFL, B178 UFL, B336 UFL, DSM 30147T HAM, BK1223 EVM, B165 UFL, B166 UFL, B167 UFL, B168_TR_101 UFL, B170 UFL
Rhizobium rosettiformans Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium rubi Gram-, aerobic rods. Soil, plant samples 1 Yes DSM 6772T HAM
Rhizobium selenitireducens Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium skierniewicense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium soli Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium sullae Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium taibaishanense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium tibeticum Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium tropici Gram-, aerobic rods. Soil, plant samples 1 Yes DSM 11418T HAM
Rhizobium tubonense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium undicola Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium vallis Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium vignae Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium vitis Gram-, aerobic rods. Soil, plant samples 1 No
Rhizobium yanglingense Gram-, aerobic rods. Soil, plant samples 1 No
Rhizopus microsporus Fungus Yes RVA_08I VML
Rhodobacter aestuarii Gram- Yes DSM 19945T DSM
Rhodobacter azotoformans Gram- No
Rhodobacter blasticus Gram- No
Rhodobacter capsulatus Gram- No
Rhodobacter johrii Gram- No
Rhodobacter maris Gram- No
Rhodobacter megalophilus Gram- No
Rhodobacter ovatus Gram- No
Rhodobacter sphaeroides Gram- No
Rhodobacter veldkampii Gram- Yes DSM 11550T DSM
Rhodobacter vinaykumarii Gram- No
Rhodobacter viridis Gram- No
Rhodococcus aetherivorans Yes DSM 44752T DSM
Rhodococcus artemisiae null null null No null
Rhodococcus baikonurensis Yes DSM 44587T DSM
Rhodococcus coprophilus Yes B301 UFL, DSM 43347T DSM
Rhodococcus corynebacterioides Yes DSM 20151T DSM
Rhodococcus equi Yes DSM 1990 DSM, 559 LAL, DSM 20295 DSM, DSM 20307T DSM, DSM 43950 DSM, DSM 46064 DSM, DSM 46101 DSM, Cory_35 IBS
Rhodococcus erythropolis Yes B254 UFL, B303 UFL, DSM 12789 DSM, DSM 16550 DSM, DSM 20665 DSM, DSM 311 DSM, DSM 43296 DSM, DSM 43188 DSM, DSM 43060 DSM, DSM 43933 DSM, DSM 44235 DSM, DSM 44522 DSM, DSM 44308 DSM, DSM 44534 DSM, DSM 7337 DSM, IMET 7462T HKJ
Rhodococcus fascians Yes B304 UFL, DSM 43987 DSM, B520 UFL, DSM 20131 DSM, DSM 20669T DSM, DSM 43985 DSM, DSM 44858 DSM, DSM 46103 DSM
Rhodococcus globerulus Yes DSM 43953 DSM, B312 UFL, DSM 43954T DSM, DSM 44310 DSM
Rhodococcus gordoniae Yes DSM 44690 DSM
Rhodococcus imtechensis Yes DSM 45091T DSM
Rhodococcus jialingiae No
Rhodococcus jostii Yes DSM 44719T DSM
Rhodococcus koreensis Yes DSM 44498T DSM
Rhodococcus kroppenstedtii Yes DSM 44908T DSM
Rhodococcus kunmingensis Yes DSM 45001T DSM
Rhodococcus kyotonensis No
Rhodococcus maanshanensis Yes DSM 44675T DSM
Rhodococcus marinonascens Yes DSM 43752T DSM
Rhodococcus opacus Yes B408_FI UFL, DSM 43252 DSM, DSM 43251 DSM, DSM 43250 DSM, DSM 43205T DSM
Rhodococcus percolatus Yes DSM 44240T DSM
Rhodococcus phenolicus Yes DSM 44812T DSM
Rhodococcus pyridinivorans Yes DSM 20415 DSM, DSM 44555T DSM
Rhodococcus qingshengii No
Rhodococcus rhodnii Yes B305 UFL, DSM 43336T DSM, DSM 43337 DSM, DSM 43959 DSM, DSM 43960 DSM
Rhodococcus rhodochrous Yes B257 UFL, B306 UFL, B375 UFL, DSM 363 DSM, DSM 43198 DSM, DSM 43234 DSM, DSM 6427 DSM, DSM 6263 DSM, DSM 46045 DSM, DSM 46023 DSM, DSM 43986 DSM, DSM 43274 DSM
Rhodococcus ruber Yes DSM 43335 DSM, DSM 43560 DSM, DSM 43563 DSM, DSM 44190 DSM, DSM 44495 DSM, DSM 44539 DSM, DSM 46646 DSM, DSM 44540 DSM, DSM 44541 DSM, DSM 44755 DSM, DSM 44758 DSM, DSM 46008 DSM, DSM 7512 DSM, DSM 6264 DSM, HKI 7477 HKJ
Rhodococcus triatomae Yes DSM 44892T DSM, DSM 44893 DSM
Rhodococcus wratislaviensis Yes DSM 44107T DSM
Rhodococcus yunnanensis Yes DSM 44837T DSM
Rhodococcus zopfii Yes DSM 44108T DSM, DSM 44189 DSM
Rhodospiridium sp Yeast (Fungus) Yes CS 135_1 BRB
Rhodotorula acheniorum Yeast (Fungus) soil, water, air samples Yes DSM 70584 DSM
Rhodotorula bacarum Yeast (Fungus) soil, water, air samples Yes DSM 70854T DSM
Rhodotorula bogoriensis Yeast (Fungus) soil, water, air samples Yes DSM 70872T DSM
Rhodotorula glutinis Yeast (Fungus) soil, water, air samples Yes DSM 70398 DSM, DSM 10134 DSM
Rhodotorula minuta Yeast (Fungus) soil, water, air samples Yes DSM 4043 DSM, DSM 3016 DSM, DSM 14202 DSM
Rhodotorula mucilaginosa Yeast (Fungus) soil, water, air samples Yes DSM 18184 DSM, DSM 70403 DSM, DSM 70404 DSM, DSM 70825 DSM, WSYC 342T VML, VML, MY00555_08 ERL
Rhodotorula pustula Yeast (Fungus) soil, water, air samples Yes DSM 70865T DSM
Rickettsia aeschlimannii Rash of maculopapules Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia africae African tick-bite fever Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia asiatica Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia australis Queensland tick-typhus Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No null
Rickettsia bellii Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia felis Flea born spotted fever in cats Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia heilongjiangensis Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia helvetica Spotted fever and meningitis Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia honei Flinders island spotted fever Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia hoogstraalii Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia japonica Japanese spotted fever Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia massiliae Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia parkeri American tick-bite fever Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia peacockii Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia raoultii Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia rhipicephali Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia sibirica North Asian tick-typhus Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia slovaca Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Rickettsia tamurae Gram-, non-motile, obligate intracellular parasites, non-sporeforming, highly pleiomorfic. 2 No
Riemerella anatipestifer Yes DSM 15868T DSM, 11_00491_06 VAXM, GD47 GDD, GD48 GDD, GD49 GDD
Riemerella columbina Yes DSM 16469T DSM
Rodentibacter pneumotropicus Yes DSM 21403T DSM, A 73_11 FLR LDJ6208-12, LDJ507-12
Roseomonas aerilata null null null No null
Roseomonas aestuarii null null No null
Roseomonas aquatica No
Roseomonas cervicalis No
Roseomonas frigidaquae null null null No null
Roseomonas gilardii null null No null
Roseomonas gilardii ssp gilardii null null null No null
Roseomonas gilardii ssp rosea null null null No null
Roseomonas lacus null null null No null
Roseomonas ludipueritiae null null No null
Roseomonas mucosa Yes AL905209_BK14662 UKH
Roseomonas pecuniae null null null No null
Roseomonas rosea null null null No null
Roseomonas stagni null null No null
Roseomonas terrae No
Roseomonas vinacea null null null No null
Rothia aeria Yes Cory_26 IBS
Rothia aeria Yes DSM 14556T DSM
Rothia amarae Yes DSM 15839T DSM, IBS_MS_31 IBS
Rothia dentocariosa Yes B16575_bh8 IBS, DSM 43762T DSM, G18709 IBS, G6496_ch28 IBS, RV_BA1_032010_D LBK
Rothia mucilaginosa Yes DSM 20445 DSM, DSM 20446 DSM, DSM 20746T DSM
Rothia mucilaginosa Yes BK2995_09 ERL
Rothia nasimurium Yes DSM 15694T DSM, 10037052_102 USH, 10036873_108 USH, 10036870_103 USH
Rothia terrae No
Rubrivivax benzoatilyticus No
Rubrivivax gelatinosus Yes DSMZ 1709T PAH
Ruminococcus albus No
Ruminococcus bromii null null No null
Ruminococcus callidus null null null No null
Ruminococcus champanellensis No
Ruminococcus faecis null null null No null
Ruminococcus flavefaciens null null No null
Ruminococcus gauvreauii null null null No null
Ruminococcus gnavus Yes 1 RLT, VA20002_11 ERL
Ruminococcus lactaris null null null No null
Ruminococcus obeum null null null No null
Ruminococcus torques null null No null
Rummeliibacillus pycnus Yes DSM 15030T DSM
Rummeliibacillus stabekisii null null No null
Saccharomyces cervisae Yeast 1 Yes 991400574 LBK, BJ2168 BRL, DTY3 BRL, INVSC1 BRL, ISOLAT LGL MUENCHEN, KONTROLLSTAMM HUMANMEDIZIN VML, WS LLH
Saccharopolyspora antimicrobica null null null No null
Saccharopolyspora cebuensis null null null No null
Saccharopolyspora erythraea Yes HKI 184 HKJ
Saccharopolyspora flava null null null No null
Saccharopolyspora gloriosae null null null No null
Saccharopolyspora gregorii null null null No null
Saccharopolyspora halophila No
Saccharopolyspora hirsuta ssp hirsuta Yes HKI 9709 HKJ
Saccharopolyspora hirsuta ssp kobensis null null null No null
Saccharopolyspora hordei null null null No null
Saccharopolyspora jiangxiensis null null null No null
Saccharopolyspora phatthalungensis No
Saccharopolyspora qijiaojingensis null null null No null
Saccharopolyspora rectivirgula Hypersensitivity pneumonitis Anaerobe gram+ rods (clusters form "hyphae-like" structures) Decaying organic matter, soil samples, mucosal surfaces 2 No null
Saccharopolyspora rosea null null null No null
Saccharopolyspora shandongensis null null null No null
Saccharopolyspora spinosa null null null No null
Saccharopolyspora spinosporotrichia null null null No null
Saccharopolyspora taberi null null null No null
Saccharopolyspora thermophila null null null No null
Saccharopolyspora tripterygii null null null No null
Saccharothrix mutabilis ssp capreolus Fungus Yes HKI 264 HKJ
Saccharothrix mutabilis ssp mutabilis Fungus Yes HKI 9771 HKJ
Saccharothrix syringae Fungus No
Salimicrobium album null null null No null
Salimicrobium flavidum No
Salimicrobium halophilum Yes DSM 4771T DSM
Salimicrobium luteum No
Salimicrobium salexigens null null null No null
Salinivibrio costicola null null null No null
Salinivibrio costicola ssp alcaliphilus No
Salinivibrio costicola ssp costicola Yes DSM 11403T HAM
Salinivibrio costicola ssp vallismortis null null null No null
Salinivibrio proteolyticus null null null No null
Salinivibrio sharmensis null null null No null
Salinivibrio siamensis No
Salmonella parathyphi Yes 9322, 5709, 10412
Salmonella sp (bongori) Yes DSM 13772T HAM
Salmonella sp (choleraesuis) Yes 08 LAL
Salmonella sp (enterica st Anatum) Yes 11 LAL
Salmonella sp (enterica st Arizonae) Yes DSM 9386T HAM, LBK
Salmonella sp (enterica st Diarizonae) Yes DSM 14847T HAM
Salmonella sp (enterica st Dublin) Yes Sa05_188 VAB
Salmonella sp (enterica st Enterica) Yes DSM 17058T HAM
Salmonella sp (enterica st Gallinarum) Yes FLR
Salmonella sp (enterica st Hadar) Yes Sa05_506 VAB
Salmonella sp (enterica st Houtenae) Yes DSM 9221T HAM
Salmonella sp (enterica st Indica) Yes DSM 14848T HAM
Salmonella sp (enterica st Salamae) Yes DSM 9220T HAM
Salmonella sp (enterica st Stanley) Yes 15 LAL
Salmonella sp (enteritidis) Yes 25089078 (PX) MLD
Salmonella sp (typhimurium) Yes 12 LAL
Samsonia erythrinae Yes DSM 16730T HAM
Saprochaere clavata Yeast Yes CBS 970 87 CBS, CBS 425 71 CBS, CBS 969 87 CBS, CBS 489 88 CBS
Saprochaere suaveolens Yeast Yes CBS 610 85 CBS
Sarocladium strictum Yeast Yes RV1 MY 1 11 ERL, MY681 10 ERL
Scedosporium aurantiacum fungus Yes 149 VML
Schizophyllum commune fungus Yes RV07_02 23 VML
Schizosaccharomyces pombe fungus Yes FY261 BRL
Scopulariopsis_brevicaulis[ana]# (Microascus_brevicaulis[teleo]) fungus Yes RV C VML, 131 RVE_06 VML
Selenomonas infelix Yes P3bue_re8AN USH, P3flue_re8AN USH null
Selenomonas sputigena Yes P3bue_li7AN USH null
Serratia entomophila Yes DSM 12358T DSM
Serratia ficaria Yes DSM 4569T DSM
Serratia fonticola Yes DSM 4576T DSM, DSM 9663 DSM, DSM 9664 DSM
Serratia glossinae No
Serratia grimesii Yes DSM 30063T DSM
Serratia liquefaciens Yes DSM 30064 DSM, CCM 2716 CCM, DSM 30065 DSM, DSM 30066 DSM, DSM 30067 DSM, DSM 30068 DSM, DSM 30069 DSM, DSM 30125 DSM, DSM 4487T DSM
Serratia marcescens Yes (PX) 24086109 MLD, 13103_1CHB, DSM 12481 DSM, DSM 12483 DSM, DSM 12485 DSM, DSM 30122 DSM
Serratia marcescens ssp marcescens Yes DSM 30121T DSM
Serratia marcescens ssp sakuensis Yes CIP 107489T HAM
Serratia nematodiphila No
Serratia odorifera Yes DSM 4582T DSM
Serratia plymuthica Yes DSM 4540T DSM, DSM 30127 DSM, DSM 8572 DSM, DSM 49 DSM, DSM 8571 DSM
Serratia proteamaculans Yes DSM 4543T DSM
Serratia quinivorans Yes DSM 4597T DSM
Serratia rubidaea Yes CCM 3412 CCM, CCM 3413 CCM, CCM 4684 CCM, DSM 4480T HAM, DSM 46275 DSM
Serratia symbiotica No
Serratia ureilytica Yes DSM 16952T DSM
Shewanella abyssi No
Shewanella algae Gamma Proteobacteria rod-shaped Gram-negative marine bacterium marine water Yes DSM 9167T HAM
Shewanella algidipiscicola No
Shewanella amazonensis No
Shewanella aquimarina No
Shewanella arctica No
Shewanella atlantica No
Shewanella baltica Yes DSM 9439T HAM
Shewanella basaltis No
Shewanella benthica null null null No null
Shewanella canadensis No
Shewanella chilikensis No
Shewanella colwelliana No
Shewanella corallii null null null No null
Shewanella decolorationis No
Shewanella denitrificans No
Shewanella donghaensis No
Shewanella fidelis Yes LMG 20552T HAM
Shewanella fodinae No
Shewanella frigidimarina Yes DSM 12253T HAM
Shewanella gaetbuli null null null No null
Shewanella gelidimarina No
Shewanella glacialipiscicola No
Shewanella hafniensis No
Shewanella halifaxensis No
Shewanella haliotis null null null No null
Shewanella hanedai No
Shewanella indica No
Shewanella irciniae No
Shewanella japonica null null null No null
Shewanella kaireitica No
Shewanella livingstonensis No
Shewanella loihica null null null No null
Shewanella marina No
Shewanella marinintestina No
Shewanella marisflavi No
Shewanella morhuae null null null No null
Shewanella olleyana No
Shewanella oneidensis No
Shewanella pacifica No
Shewanella pealeana null null null No null
Shewanella piezotolerans No
Shewanella pneumatophori No
Shewanella profunda Yes DSM 15900T HAM
Shewanella psychrophila null null null No null
Shewanella putrefaciens Yes CCM 2803 CCM, CCM 2601 CCM, CCM 2600 CCM, 05_1570B EGS
Shewanella sairae No
Shewanella schlegeliana No
Shewanella sediminis No
Shewanella spongiae No
Shewanella surugensis No
Shewanella vesiculosa No
Shewanella violacea null null null No null
Shewanella waksmanii null null null No null
Shewanella woodyi No
Shewanella xiamenensis null null null No null
Shigella boydii 2 No
Shigella flexneri 2 No
Shigella sonnei null null null 2 No null
Shimwellia blattae Yes DSM 4481T HAM
Shimwellia flava null null null No null
Shimwellia pseudoproteus null null null No null
Shimwellia soli null null null No null
Sinomonas albida No
Sinomonas atrocyanea Yes DSM 20127T DSM, HKI 10432 HKJ
Sinomonas echigonensis No
Slackia equolifaciens No
Slackia exigua Yes 14 RLT, DSM 15923T DSM, VA_20157_09 ERL, VA01714_10 ERL, P8bue_re3AN USH
Slackia faecicanis No
Slackia heliotrinireducens Yes DSM 20476T DSM
Slackia isoflavoniconvertens No
Slackia piriformis No
Sodalis glossinidius Yes DSM 16929T HAM
Solibacillus silvestris Yes DSM 12223T DSM
Solobacterium moorei Yes 110324_64 PNU, 110721 MLB null
Sphingobacterium anhuiense No
Sphingobacterium antarcticum null null null No null
Sphingobacterium bambusae No
Sphingobacterium canadense No
Sphingobacterium composti No
Sphingobacterium daejeonense No
Sphingobacterium faecium Yes DSM 11690T HAM
Sphingobacterium kitahiroshimense No
Sphingobacterium mizutaii Yes DSM 11724T HAM
Sphingobacterium multivorum Yes DSM 11691T HAM
Sphingobacterium shayense No
Sphingobacterium siyangense No
Sphingobacterium spiritivorum Yes DSM 11722T HAM, VA14846_09 ERL
Sphingobacterium thalpophilum Yes DSM 11723T HAM
Sphingobacterium wenxiniae No
Sphingobium abikonense No
Sphingobium amiense Yes DSM 16289T DSM
Sphingobium aromaticiconvertens Yes DSM 12677T DSM
Sphingobium chinhatense No
Sphingobium chlorophenolicum Yes DSM 8671 DSM, DSM 7098T HAM, DSM 7098T DSM, DSM 6824 DSM
Sphingobium chungbukense No
Sphingobium cloacae Yes DSM 14926T HAM
Sphingobium faniae No
Sphingobium francense No
Sphingobium fuliginis Yes DSM 18781T DSM
Sphingobium herbicidovorans Yes DSM 11019T HAM, B533 UFL
Sphingobium indicum Yes DSM 16412T DSM
Sphingobium japonicum Yes DSM 16413T DSM
Sphingobium jiangsuense No
Sphingobium lactosutens No
Sphingobium lucknowense No
Sphingobium olei Yes DSM 18999T DSM
Sphingobium qiguonii No
Sphingobium quisquiliarum No
Sphingobium rhizovicinum No
Sphingobium scionense No
Sphingobium ummariense No
Sphingobium vermicomposti No
Sphingobium vulgare No
Sphingobium wenxiniae No
Sphingobium xenophagum Yes DSM 6383T HAM
Sphingomonas abaci Yes DSM 15867T DSM
Sphingomonas adhaesiva Yes DSM 7418T HAM
Sphingomonas aerolata Yes DSM 14746T DSM
Sphingomonas aestuarii No
Sphingomonas aquatilis Yes DSM 15581T HAM, DSM 15581T DSM
Sphingomonas asaccharolytica Yes DSM 10564T DSM
Sphingomonas astaxanthinifaciens No
Sphingomonas aurantiaca Yes DSM 14749 DSM, DSM 14748T HAM, DSM 14748T DSM
Sphingomonas azotifigens Yes DSM 18530T DSM
Sphingomonas changbaiensis No
Sphingomonas desiccabilis Yes DSM 16792T DSM
Sphingomonas dokdonensis No
Sphingomonas echinoides No
Sphingomonas faeni Yes DSM 14747T HAM
Sphingomonas fennica No
Sphingomonas ginsenosidimutans No
Sphingomonas glacialis No
Sphingomonas haloaromaticamans Yes DSM 13477T DSM
Sphingomonas hankookensis No
Sphingomonas histidinilytica No
Sphingomonas insulae No
Sphingomonas japonica No
Sphingomonas jaspsi No
Sphingomonas jejuensis No
Sphingomonas jinjuensis No
Sphingomonas kaistensis No
Sphingomonas koreensis Yes DSM 15582T HAM, CS 509_4 BRB null
Sphingomonas mali Yes DSM 10565T DSM
Sphingomonas melonis Yes DSM 14444T DSM
Sphingomonas molluscorum Yes DSM 19588T DSM
Sphingomonas mucosissima Yes DSM 17494T DSM
Sphingomonas oligophenolica No
Sphingomonas oryziterrae No
Sphingomonas panni Yes DSM 15761T DSM
Sphingomonas parapaucimobilis Yes DSM 7463T DSM
Sphingomonas paucimobilis Yes DSM 30198 DSM, DSM 1098T HAM, B341 UFL
Sphingomonas phyllosphaerae Yes DSM 17258T DSM
Sphingomonas pituitosa Yes DSM 13101T HAM
Sphingomonas polyaromaticivorans No
Sphingomonas pruni Yes DSM 10566T DSM
Sphingomonas pseudosanguinis Yes DSM 19512T DSM
Sphingomonas roseiflava No
Sphingomonas rubra No
Sphingomonas sanguinis Yes DSM 13885T DSM, 008_Neb20 NFI
Sphingomonas sanxanigenens No
Sphingomonas soli Yes DSM 18313T DSM
Sphingomonas sp Yes DSM 7458 DSM, DSM 7356 DSM, DSM 19371 DSM, DSM 12247 DSM, B616 UFL, B605 UFL, B556 UFL, B399 UFL
Sphingomonas suberifaciens No
Sphingomonas trueperi Yes DSM 7225T HAM, DSM 7225T DSM
Sphingomonas wittichii Yes DSM 6014T HAM, DSM 6014T DSM
Sphingomonas xinjiangensis No
Sphingomonas yabuuchiae Yes DSM 14562T HAM, DSM 14562T DSM
Sphingomonas yunnanensis Yes DSM 17000T DSM
Sphingopyxis alaskensis No
Sphingopyxis baekryungensis Yes DSM 16222T DSM
Sphingopyxis bauzanensis No
Sphingopyxis chilensis Yes DSM 14889T DSM
Sphingopyxis flavimaris No
Sphingopyxis ginsengisoli No
Sphingopyxis granuli No
Sphingopyxis litoris No
Sphingopyxis macrogoltabida Yes DSM 8826T HAM
Sphingopyxis marina No
Sphingopyxis panaciterrae No
Sphingopyxis panaciterrulae No
Sphingopyxis soli No
Sphingopyxis taejonensis No
Sphingopyxis terrae Yes DSM 8831T HAM
Sphingopyxis ummariensis No
Sphingopyxis witflariensis Yes DSM 14551T DSM
Sporobolomyces roseus Fungus Yes CBS 486T PAH
Sporobolomyces_salmonicolor[ana]# (Sporidiobolus_salmonicolor[teleo]) Fungus Yes CBS 490T PAH, RV_2_2005 VML
Sporolactobacillus inulinus No
Sporolactobacillus kofuensis No
Sporolactobacillus lactosus No
Sporolactobacillus laevolacticus Yes DSM 442T DSM
Sporolactobacillus nakayamae No
Sporolactobacillus nakayamae ssp. nakayamae No
Sporolactobacillus nakayamae ssp. racemicus No
Sporolactobacillus putidus No
Sporolactobacillus terrae No
Sporolactobacillus vineae No
Sporopachydermia cereana Yeast (Fungus) Yes 82 PIM
Sporosarcina antarctica No
Sporosarcina aquimarina No
Sporosarcina contaminans No
Sporosarcina globispora Yes DSM 4T DSM
Sporosarcina koreensis No
Sporosarcina luteola No
Sporosarcina newyorkensis No
Sporosarcina pasteurii No
Sporosarcina psychrophila Yes DSM 3T DSM
Sporosarcina saromensis No
Sporosarcina soli No
Sporosarcina thermotolerans No
Sporosarcina ureae No
Sporothrix schenckii Fungus 2 Yes RV07_01 20 VML
Staphylococcus agnetis No
Staphylococcus arlettae Yes DSM 20672T DSM, DSM 20673 DSM, CS 678_7 BRB null
Staphylococcus aureus Cutaneous infections (impetigo, folliculitis, furnecles, carbuncles, wounds) Disseminated infections (pneumonia, empyema, osteomyelitis, septic arthritis) Toxin mediated infections (TSS, scalded skin syndrome, food poisoning) Community acquired infections Aerobic or facultatively anaerobic Gram+ cocci Skin samples, environmental samples, mucosal surfaces, food 2 Yes ATCC_33862_THL, ATCC_33591_THL, ATCC_29213_THL, ATCC_25923_THL ATCC_29213_SMI
Staphylococcus aureus ssp anaerobius Yes DSM 20714T DSM
Staphylococcus aureus ssp aureus Yes DSM 11822 DSM, DSM 20232 DSM, DSM 20491 DSM, DSM 346 DSM, DSM 3463 DSM, DSM 4910 DSM, DSM 20652 DSM
Staphylococcus auricularis Yes BK04812_08 ERL, DSM 20609 DSM
Staphylococcus capitis Yes Mb18717_1 CHB
Staphylococcus capitis ssp capitis Yes DSM 20325 DSM, DSM 20326T DSM, DSM 20327 DSM, DSM 6180 DSM
Staphylococcus capitis ssp urealyticus Yes DSM 6717T DSM
Staphylococcus caprae Yes DSM 20608T DSM, 155 RLT, BK1201 EVM
Staphylococcus carnosus ssp carnosus Yes DSM 20501T DSM
Staphylococcus carnosus ssp utilis Yes DSM 11676T DSM, DSM 11677 DSM
Staphylococcus chromogenes Yes DSM 20454T DSM
Staphylococcus cohnii ssp cohnii Yes DSM 20260T DSM, DSM 20261 DSM, DSM 20262 DSM
Staphylococcus cohnii ssp urealyticus Opportunistic pathogen Firmicutes common human colonizers Yes DSM 6718T DSM, DSM 6719 DSM
Staphylococcus condimenti Yes DSM 11674T DSM, DSM 11675 DSM
Staphylococcus delphini Yes DSM 20771T DSM, CCUG 51769 CCUG, DSM 20771T BRB null
Staphylococcus devriesei No
Staphylococcus epidermidis Yes 10547 CHB, 4b_r ESL, 6b_s ESL, ATCC 12228 CHB, ATCC 12228 THL, ATCC 14990T THL, DSM 3269 DSM, CCM 4505 CCM, DSM 1798 DSM
Staphylococcus equorum ssp equorum Yes DSM 20674T DSM, DSM 20675 DSM, V794 MCRF null
Staphylococcus equorum ssp linens No
Staphylococcus felis Yes DSM 7377T DSM, V248 MCRF, V351 MCRF, V461 MCRF, V766 MCRF, V818 MCRF, V860 MCRF null
Staphylococcus fleurettii Yes DSM 13212T DSM
Staphylococcus gallinarum No
Staphylococcus haemolyticus Yes 10024 CHB, 19 ESL, 991400353 LBK, DSM 20228 DSM, DSM 20263T DSM, DSM 20264 DSM, DSM 20265 DSM, Mb18803_2 CHB, 100331_08 USP
Staphylococcus hominis Yes 18 ESL, Mb18788_1 CHB
Staphylococcus hominis ssp hominis Yes DSM 20328T DSM, DSM 20329 DSM, DSM 20330 DSM
Staphylococcus hominis ssp novobiosepticus Yes DSM 15614T DSM
Staphylococcus hyicus Yes DSM 17421 DSM, DSM 20459T DSM
Staphylococcus intermedius Yes 08_STAINT MVO, DSM 20373T DSM, DSM 20373T BRB null
Staphylococcus kloosii Yes DSM 20676T DSM, DSM 20677 DSM, DSM 20677 DT DSM, DSM 20677 Ex DSM
Staphylococcus lentus Opportunistic pathogen in immunocompromised patients Gram positive, oxidase-positive, coagulase-negative skin and udders of goats and sheep, and also reportedly from frass of housefly larvae. Yes DSM 20352T DSM, DSM 6672 DSM
Staphylococcus lugduensis Native valve endocarditis Aerobic or facultatively anaerobic Gram+ cocci Skin samples, environmental samples, mucosal surfaces 2 Yes 20659_1 CHB, DSM 4804T DSM, DSM 4805 DSM, DSM 4806 DSM, DSM 6670 DSM, IBS_MS_7 IBS
Staphylococcus lutrae Yes DSM 10244T DSM, DSM 10246 DSM, DSM 10245 DSM
Staphylococcus massiliensis No
Staphylococcus microti No
Staphylococcus muscae Yes DSM 7068T DSM
Staphylococcus nepalensis Yes DSM 15150T DSM, DSM 15151 DSM
Staphylococcus pasteuri produces beta toxin Gram positive cocci Firmicutes human vomit... human,animal and food specimens Yes DSM 10656T DSM, DSM 10657 DSM, 110706_L1 LUMC null
Staphylococcus pettenkoferi Yes 0903M12_075701 IBS, 994600325 LBK, DSM 19554T DSM, KL906013_BK14723 DT UKH, KL906013_BK14723 Ex UKH
Staphylococcus piscifermentans Yes 900400383 LBK, DSM 7373T DSM
Staphylococcus pseudintermedius Yes DSM 21284T DSM, 472 RLT, CCUG 32915 CCUG, CCUG 50530 CCUG, LMG 9079 LMG AB 680 SVA
Staphylococcus rostri No
Staphylococcus saccharolyticus Yes DSM 20359T DSM, VA_01210_09 ERL
Staphylococcus saprophyticus ssp bovis Urinary tract infections Aerobic or facultatively anaerobic Gram+ cocci Skin samples, environmental samples, mucosal surfaces, urine samples 2 Yes DSM 18669T DSM
Staphylococcus saprophyticus ssp saprophyticus Urinary tract infections Aerobic or facultatively anaerobic Gram+ cocci Skin samples, environmental samples, mucosal surfaces, urine samples 2 Yes CCM 2602 CCM, CCM 2354 CCM, CCM 2682 CCM, CCM 3318 CCM, CCM 3319 CCM, DSM 20038 DSM, DSM 20229T DSM
Staphylococcus schleiferi Yes RV_BA_03_C LBK
Staphylococcus schleiferi ssp coagulans Yes 0903M10_070501 IBS, DSM 6628T DSM, LMG 19137 LMG null
Staphylococcus schleiferi ssp schleiferi Yes DSM 4808 DSM, DSM 4807T DSM, DSM 4809 DSM
Staphylococcus sciuri ssp carnaticus Yes DSM 15613T DSM
Staphylococcus sciuri ssp rodentium Yes DSM 16827T DSM
Staphylococcus sciuri ssp sciuri Yes DSM 6671 DSM, DSM 16827T DSM
Staphylococcus simiae Yes DSM 17636T DSM, DSM 17637 DSM, DSM 17638 DSM, DSM 17639 DSM
Staphylococcus simulans Yes CCM 2724 CCM, DSM 20322T DSM, DSM 20323 DSM, DSM 20324 DSM, DSM 20723 DSM, 10w374209 RLH
Staphylococcus sp [1] Yes 901400083 LBK, 4 PIM, 10w414721 RLH, %5B1%5D CS 331_1 BRB, %5B2%5D CS 546_1 BRB null
Staphylococcus succinus ssp casei Yes DSM 15096T DSM
Staphylococcus succinus ssp succinus Yes DSM 14617T DSM
Staphylococcus vitulinus Yes DSM 15615T DSM, DSM 9931 DSM, DSM 9930 DSM
Staphylococcus warneri Yes CCM 2604 CCM, DSM 20036 DSM, DSM 20316T DSM, Mb18796_1 CHB
Staphylococcus xylosus Yes DSM 20266T DSM, DSM 6179 DSM, DSM 20267 DSM, FI FLR
Starkeya koreensis No
Starkeya novella Yes B351 UFL, B516 UFL
Stenotrophomonas acidaminiphila Yes DSM 13117T HAM
Stenotrophomonas chelatiphaga No
Stenotrophomonas daejeonensis No
Stenotrophomonas ginsengisoli No
Stenotrophomonas humi No
Stenotrophomonas koreensis No
Stenotrophomonas maltophilia Yes (PX) 23086229 MLD, 10942 CHB, LMG 2185T HAM, DSM 14322 DSM, DSM 50170T DSM, DSM 50173 DSM
Stenotrophomonas nitritireducens Yes DSM 12575T HAM
Stenotrophomonas pavanii No
Stenotrophomonas rhizophila Yes DSM 14405T DSM
Stenotrophomonas sp Yes 109_Neb28 NFI
Stenotrophomonas terrae No
Stenotrophomonas_maltophilia (Pseudomonas_beteli_#) Yes LMG 978T HAM
Stenotrophomonas_maltophilia (Pseudomonas_hibiscicola_#) Yes LMG 980T HAM
Streptobacillus moniliformis Yes DSM 12112T DSM
Streptococcus acidominimus Yes DSM 20622T DSM
Streptococcus agalactiae Neonatal disease, urinary tract infections, bacteremia, pneumonia Aerobic or facultatively anaerobic Gram+ cocci Neonates, pregnant women, patiens with diabetes, cancer, or alcoholism (mucosal surfaces, urine samples, blood samples) 2 Yes DSM 2134T DSM, DSM 16828 DSM, CNR 10 CTL, 04_158 CTL, 03_198 CTL, 03_145 CTL, 03_102 CTL, V29 CTL, DSM 6784 DSM
Streptococcus alactolyticus Yes DSM 5199 DSM
Streptococcus anginosus Yes 0807M10067501 IBS, DSM 20563T DSM
Streptococcus australis Yes DSM 15627T DSM
Streptococcus caballi Yes DSM 19004T DSM
Streptococcus canis Yes DSM 20715T DSM, DSM 20716 DSM, GD74 GDD null
Streptococcus castoreus Yes DSM 17536T LGL null
Streptococcus constellatus ssp constellatus Yes DSM 20575T DSM
Streptococcus constellatus ssp pharyngis Yes DSM 17475T DSM
Streptococcus criceti Yes DSM 20562T DSM
Streptococcus cristatus Yes 0807M09077301 IBS, DSM 8249T DSM
Streptococcus dentapri No
Streptococcus dentirousetti Yes DSM 18963T DSM
Streptococcus devriesei Yes CIP 107809_23 RLT, DSM 19639T DSM
Streptococcus didelphis Yes DSM 15616T DSM
Streptococcus downei Yes DSM 5635T DSM
Streptococcus dysgalactiae Yes RV_BA_03_E LBK, VA20336_10 ERL, VA30791_10 ERL, 100326_07 LDW
Streptococcus dysgalactiae ssp dysgalactiae Yes DSM 20662T DSM
Streptococcus dysgalactiae ssp equisimilis Yes DSM 6176 DSM, GD67 GDD null
Streptococcus entericus Yes DSM 14446T DSM
Streptococcus equi Yes DSM 5655 DSM
Streptococcus equi ssp equi Yes DSM 20561T DSM
Streptococcus equi ssp ruminatorum Yes DSM 17037T DSM
Streptococcus equi ssp zooepidemicus Yes ATCC 43079T THL, DSM 20727T DSM
Streptococcus equinus Yes DSM 20062 DSM, DSM 20558T DSM
Streptococcus ferus Yes DSM 20646T DSM
Streptococcus gallinaceus Yes DSM 15349T DSM
Streptococcus gallolyticus Yes 0807M15028101 IBS, DSM 13808 DSM, UCN43 BRB
Streptococcus gallolyticus ssp gallolyticus Yes DSM 16831T DSM, RV412_A2_09_03 LBK
Streptococcus gallolyticus ssp macedonicus Yes DSM 15879T DSM
Streptococcus gallolyticus ssp pasteurianus Yes 090921_01 LBK, DSM 15351T DSM, 479 RLT null
Streptococcus gordonii Yes DSM 20568 DSM, DSM 6777T DSM, 337 RLT
Streptococcus halichoeri Yes DSM 17028T DSM
Streptococcus henryi Yes DSM 19005T LGL null
Streptococcus hyointestinalis Yes DSM 20770T DSM
Streptococcus hyovaginalis Yes DSM 12219_DSM, DSM 12219T DSM
Streptococcus ictaluri No
Streptococcus infantarius Yes BRB
Streptococcus infantarius ssp. coli No
Streptococcus infantarius ssp. infantarius No
Streptococcus infantis Yes DSM 12492T DSM
Streptococcus iniae No
Streptococcus intermedius Yes DSM 20573T DSM
Streptococcus lactarius No
Streptococcus lutetiensis Yes DSM 15350T DSM
Streptococcus macacae Yes DSM 20724T DSM
Streptococcus marimammalium Yes DSM 18627T DSM
Streptococcus massiliensis Yes DSM 18628T DSM
Streptococcus merionis Yes DSM 19192T LGL null
Streptococcus minor Yes M03_003801 IBS, DSM 17118T DSM, 0903M19_085501 IBS
Streptococcus mitis Yes DSM 12643T DSM
Streptococcus mutans Yes DSM 20523T DSM
Streptococcus oligofermentans No
Streptococcus oralis Yes DSM 20627T DSM, DSM 20395 DSM, DSM 20379 DSM, DSM 20066 DSM
Streptococcus orisratti Yes DSM 15617T DSM
Streptococcus orisuis Yes DSM 18307T DSM
Streptococcus ovis Yes DSM 16829T DSM
Streptococcus parasanguinis Yes DSM 6778T DSM, CS 50_4 BRB
Streptococcus parauberis Yes DSM 6632 DSM, DSM 6631T DSM
Streptococcus peroris Yes DSM 12493T DSM
Streptococcus phocae Yes DSM 15635T DSM, DSM 15635T DSM
Streptococcus pleomorphus Yes DSM 20574T DSM
Streptococcus pluranimalium Yes DSM 15636T DSM
Streptococcus plurextorum No
Streptococcus pneumoniae Pneumonia and other respiratory tract infections, meningitis, spontaneous bacterial peritonitis, endocarditis, septic arthritis, bacteremia Aerobic or facultatively anaerobic Gram+ cocci Mucasal surfaces, blood samples 2 Yes DSM 20566T DSM, DSM 14378 DSM, DSM 14377 DSM, DSM 11868 DSM, DSM 11866 DSM, DSM 11865 DSM, besSt29 THL, ATCC 49619 THL,
Streptococcus porci No
Streptococcus porcinus Yes DSM 20725T DSM
Streptococcus porcorum No
Streptococcus pseudopneumoniae Yes DSM 18670T DSM
Streptococcus pseudoporcinus Yes DSM 18513T DSM
Streptococcus pyogenes Suppurative infections (pharyngitis, scarlet fever, sinusitis, skin and soft tissue infection, TSS-like syndrome) non-suppurative infections (rheumatic fever, glomerulonephritis) Aerobic or facultatively anaerobic Gram+ cocci Skin samples, mucasal surfaces, tissue samples 2 Yes ATCC 19615 THL, CIP 56_41T CIP, DSM 11728 DSM, DSM 20565T DSM, DSM 2071 DSM, DSM 2072 DSM, DSM 2073 DSM, DSM 2074 DSM
Streptococcus ratti Yes DSM 20564T DSM
Streptococcus rupicaprae No
Streptococcus salivarius Yes IBS_MS_23 IBS, DSM 20560T DSM, DSM 20067 DSM, 0807M25049501 IBS
Streptococcus salivarius ssp thermophilus 2 Yes DSM 8713 DSM, DSM 20479 DSM, DSM 20259 DSM, 39 RLT, 38 RLT, 37 RLT
Streptococcus sanguinis Yes CIP 55_128T CIP, DSM 20068 DSM, DSM 20567T DSM, IBS_MS_24 IBS
Streptococcus sinensis Yes DSM 14990T DSM
Streptococcus sobrinus Yes DSM 20381 DSM, DSM 20742T DSM
Streptococcus sp Yes DSM 20398 DSM, DT2005WUE DSM
Streptococcus suis Yes DSM 9682T DSM, DSM 9683 DSM, DSM 9684 DSM, GD68 GDD, GD69 GDD null
Streptococcus thoraltensis Yes DSM 12221T DSM, DSM 12222 DSM
Streptococcus uberis Yes DSM 20569T DSM, GD70 GDD, GD71 GDD null
Streptococcus urinalis Yes DSM 16830T DSM
Streptococcus ursoris No
Streptococcus vestibularis Yes DSM 5636T DSM
Streptomyces albus Yes B262 UFL
Streptomyces aureofaciens Yes CIP 57_11T CIP, DSM 40127T DSM
Streptomyces avidinii Yes B190 UFL
Streptomyces badius Yes B192 UFL
Streptomyces chartreusis Yes HKI 249 HKJ
Streptomyces galilaeus Yes HKI 22 HKJ
Streptomyces griseus Yes B261 UFL
Streptomyces hirsutus Yes B267 UFL
Streptomyces hygroscopicus Yes HKI 16 HKJ
Streptomyces lavendulae Yes B264 UFL
Streptomyces phaeochromogenes Yes B265 UFL
Streptomyces scabiei Yes DSM 40611 DSM
Streptomyces sp Yes HKI D58 HKJ, HKI 48 HKJ, HKI 77 HKJ
Streptomyces violaceoruber Yes B263 UFL
Streptosporangium sibiricum Fungus Yes HKI 30 HKJ
Suttonella indologenes Yes DSM 8309T DSM
Suttonella ornithocola No
Tatlockia micdadei Aerobic and facultative anaerobic Gram- rods 2 Yes ATCC 33218T TW VUN ATCC 33218 SMI
Tatumella citrea Yes B574 UFL, DSM 13699T HAM
Tatumella morbirosei No
Tatumella ptyseos Yes DSM 5000T HAM
Tatumella punctata Yes B575 UFL, DSM 13700T HAM
Tatumella terrea No
Taylorella asinigenitalis Yes CIP 107673T CIP null
Taylorella equigenitalis Yes DSM 10668T DSM, GD39 GDD, GD40 GDD null
Tenacibaculum adriaticum No
Tenacibaculum aestuarii No
Tenacibaculum aiptasiae No
Tenacibaculum amylolyticum No
Tenacibaculum crassostreae null null null No null
Tenacibaculum dicentrarchi null null null No null
Tenacibaculum discolor Yes NCIMB 14278T EGS
Tenacibaculum gallaicum null null null No null
Tenacibaculum geojense null null null No null
Tenacibaculum jejuense null null null No null
Tenacibaculum litopenaei No
Tenacibaculum litoreum null null null No null
Tenacibaculum lutimaris null null null No null
Tenacibaculum maritimum null null null No null
Tenacibaculum mesophilum null null null No null
Tenacibaculum ovolyticum Yes NCIMB 13127T EGS
Tenacibaculum soleae null null null No null
Terrabacter aeriphilus null null null No null
Terrabacter aerolatus null null null No null
Terrabacter carboxydivorans No
Terrabacter ginsenosidimutans null null null No null
Terrabacter lapilli null null null No null
Terrabacter terrae null null null No null
Terrabacter terrigena null null null No null
Terrabacter tumescens Yes DSM 20308T DSM
Terrimonas aquatica null null null No null
Terrimonas ferruginea Yes DSM 30193T HAM
Terrimonas lutea null null null No null
Tessaracoccus bendigoensis Facultatively anaerobic, Gram-positive, non-endospore-forming, non-motile rods. No
Tessaracoccus flavescens Facultatively anaerobic, Gram-positive, non-endospore-forming, non-motile rods. Marine sediment Yes DSM 18582T DSM
Tessaracoccus lubricantis Facultatively anaerobic, Gram-positive, non-endospore-forming, non-motile rods. No
Tessaracoccus oleiagri Facultatively anaerobic, Gram-positive, non-endospore-forming, non-motile rods. No
Tetragenococcus halophilus ssp flandriensis No
Tetragenococcus halophilus ssp halophilus null null null No null
Tetragenococcus koreensis No
Tetragenococcus muriaticus null null null No null
Tetragenococcus osmophilus null null null No null
Tetragenococcus solitarius Yes DSM 5634T DSM
Thauera aminoaromatica Yes S2 MPB
Thauera aromatica Yes K172 MPB, strain XyN1 MPB
Thauera butanivorans null null null No null
Thauera chlorobenzoica Yes 3CB_1 MPB
Thauera linaloolentis Yes 47Lol MPB
Thauera mechernichensis Yes Tl1 MPB
Thauera phenylacetica Yes B4P MPB
Thauera selenatis No
Thauera terpenica Yes 58Eu MPB
Thermoactinomyces intermedius No
Thermoactinomyces sp[2] Yes CS 218_1a1 BRB
Thermoactinomyces vulgaris No
Thermoanaerobacter thermohydrosulfuricus null null null Yes DSM 2247 DSM, DSM 567T DSM, DSM 568 DSM, DSM 570 DSM null
Thermoanaerobacterium thermosaccharolyticum null null null Yes DSM 571T DSM, DSM 572 DSM null
Thermoanaerobacterium thermosulfurigenes null null null Yes DSM 2229 DSM null
Tissierella creatinini No
Tissierella creatinophila null null null No null null null
Tissierella praeacuta Yes 1078_ATCC 33268T BOG, DSM 5675 DSM
Trabulsiella guamensis Yes DSM 16940T HAM
Trabulsiella odontotermitis null null null No null null null
Treponema pallidum null null null 2 No null null null
Trichophyton interdigitale Fungus 2 Yes RV06 32 VML
Trichophyton mentagrophytes Fungus 2 Yes 31 VML
Trichophyton rubrum Fungus 2 Yes 25 VML, VML
Trichophyton tonsurans Fungus 2 Yes VML, 28 VML, RV491_Sep09_C LBK
Trichosporon asahii null null null Yes MY00358_09 ERL null
Trichosporon asahii Fungus Yes 29 VML, 35 VML
Trichosporon coremiiforme Fungus Yes CBS 2482T CBS, CBS 2469 CBS
Trichosporon cutaneum Fungus Yes 120 PSB,
Trichosporon debeurmannianum Fungus Yes VML
Trichosporon dohaense Fungus Yes CBS 11017 CBS, CBS 10761T CBS, CBS 10333 CBS
Trichosporon dulcitum Fungus Yes CBS 7608 CBS, CBS 5786 CBS
Trichosporon faecale Fungus Yes CBS 4828T CBS
Trichosporon gracile Fungus Yes CBS 8189T CBS, CBS 7609 CBS, CBS 6861 CBS, CBS 5066 CBS
Trichosporon inkin Fungus Yes RVC_08I VML
Trichosporon japonicum Fungus Yes CBS 8641T CBS
Trichosporon jirovecii Fungus Yes CBS 8826 CBS, CBS 6950 CBS, CBS 6864T CBS
Trichosporon laibachii Fungus Yes CBS 8900 CBS, CBS 8523 CBS, CBS 5791 CBS, CBS 5790T CBS, CBS 5381 CBS
Trichosporon loubieri Fungus Yes CBS 9171 CBS, CBS 8265 CBS, CBS 7719 CBS, 7691 CBS, CBS 7132 CBS, CBS 7065T CBS
Trichosporon moniliiforme Fungus Yes CBS 5959 CBS, CBS 2467T CBS
Trichosporon montevideense Fungus Yes CBS 6721T CBS
Trichosporon mucoides Fungus Yes ATCC 204094 THL, DSM 12017 DSM
Trichosporon mycotoxinivorans Fungus Yes 11_0046_01 r RKB, 11_0046_02 m RKB
Trichosporon ovoides Fungus Yes VML
Trichosporon sp Fungus Yes 122 PSB, 128 PSB
Trichosporon terricola Fungus Yes CBS 8497 S CBS, CBS 8497 R CBS
Trueperella abortisuis Yes DSM 19515T UGV, UGV 1142 UGV, UGV 1672 UGV, UGV 3064 UGV
Trueperella bernardiae eye infections gram+ facultative anaerobic catalase neg, pleomorphic rods human blood 2 Yes DSM 9151 DSM, DSM 9152T DSM, DSM 9153 DSM
Trueperella bialowiezens gram+ facultative anaerobic catalase neg, pleomorphic rods 2 Yes DSM 17162T DSM
Trueperella bonasi gram+ facultative anaerobic catalase neg, pleomorphic rods 2 Yes DSM 17163T DSM, DSM 17163T UGV null
Trueperella pyogenes capable of producing suppurative lesions in any organ or tissue in animals gram+ facultative anaerobic catalase neg, pleomorphic rods animals 2 Yes DSM 20594 DSM, DSM 20630T DSM, 11_0097646_001_01 LGL, DSM 20594 UGV, UGV 1071 UGV, UGV 115_19 UGV, UGV 1514 UGV, UGV 4984 UGV
Tsukamurella carboxydivorans null null null No null
Tsukamurella hongkongensis No JCM30715
Tsukamurella inchonensis Yes DSM 43246 DSM
Tsukamurella paurometabola Yes DSM 20162T DSM, DSM 43345 DSM, DSM 46042 DSM, IMET 11082T HKJ, IMET 7373 HKJ
Tsukamurella pseudospumae null null null No null
Tsukamurella pulmonis null null null No Tsukamurella pulmonis CCUG35732 null
Tsukamurella sinensis No JCM30714
Tsukamurella soli null null null No null
Tsukamurella sp Yes RV_Feb_05 MLD
Tsukamurella spongiae null null null No null
Tsukamurella spumae null null null No null
Tsukamurella strandjordii No Tsukamurella strandjordii ATCC BAA-173 null
Tsukamurella sunchonensis null null null No null
Tsukamurella tyrosinosolvens null null null No Tsukamurella tyrosinosolvens CCUG38499 null
Turicella otitidis Yes 121_x_B9341_72 IBS, 9015000321 LBK, 900300600 LBK, DSM 8821T DSM
Udeniomyces puniceus Fungus Yes DSM 4657 DSM
Vagococcus acidifermentans Gram+, catalase negative cocci No
Vagococcus carniphilus Gram+, catalase negative cocci No
Vagococcus elongatus Gram+, catalase negative cocci No
Vagococcus fessus Gram+, catalase negative cocci No
Vagococcus fluvialis Gram+, catalase negative cocci Yes 0903M02_085701 IBS, DSM 21402 DSM, DSM 5731T DSM, DSM 5732 DSM
Vagococcus lutrae Gram+, catalase negative cocci Yes 105_S_21_QSA IBS
Vagococcus penaei Gram+, catalase negative cocci No
Vagococcus salmoninarum Gram+, catalase negative cocci No
Varibaculum cambriense Potential pathogen in skin and soft tissue infections. Gram+, anaerobic bacterium. Human vagina and abscesses 2 Yes 110324_100 PNU
Variovorax boronicumulans null Gram-, aerobic motile, curved rod-shaped. No
Variovorax dokdonensis null Gram-, aerobic motile, curved rod-shaped. No
Variovorax ginsengisoli null Gram-, aerobic motile, curved rod-shaped. No
Variovorax paradoxus Gram-, aerobic motile, curved rod-shaped. Yes DSM 1071 DSM, DSM 1070 DSM, DSM 30034T DSM, DSM 30162 DSM, DSM 645 DSM, DSM 646 DSM, DSM 647 DSM
Variovorax soli null Gram-, aerobic motile, curved rod-shaped. No
Veillonella alcalescens ssp alcalescens Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 No null
Veillonella atypica Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes DSM 20739T DSM, DSM 1399 DSM, 110706_D8 LUMC null
Veillonella caviae Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes DSM 20738T DSM null
Veillonella criceti Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes DSM 20734T DSM null
Veillonella denticariosi Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes DSM 19009T DSM, DSM 19010 DSM null
Veillonella dispar Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes DSM 20735T DSM, P7bue_li1AN USH null
Veillonella magna Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes 1346 D432 AHVLA null
Veillonella montpellierensis Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes DSM 17217T DSM, 110706_D7 LUMC null
Veillonella parvula Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes DSM 2007 DSM, DSM 2008T DSM null
Veillonella ratti Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes DSM 20736T DSM
Veillonella rodentium Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 No null
Veillonella rogosae Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes DSM 18960T DSM
Veillonella sp[3] Rarely osteomyelitis and endocarditis Gram- anaerobic cocci, fementes lactate. Intestine and oral mucosa of mammals 2 Yes 0807M16032801 IBS
Vibrio aerogenes Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 14438T HAM
Vibrio aestuarianus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 7909T HAM
Vibrio agarivorans Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 13756T HAM
Vibrio albensis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 4406T HAM
Vibrio alginolyticus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 2171T DSM, CCM 7037 CCM, CCM 5941 CCM, CCM 2578T CCM
Vibrio alginolyticus ssp. iophagus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio anguillarum Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. 1 Yes DSM 11323 DSM, 02 EGS, 03 EGS, DSM 21597T DSM, LMG 4437T HAM, SEROTYPE 02 EGS, SEROTYPE 03 EGS
Vibrio areninigrae Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio artabrorum Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio atlanticus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio atypicus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio azureus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio brasiliensis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 17184T HAM
Vibrio breoganii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio campbellii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 11216T HAM
Vibrio casei Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio celticus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio chagasii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 17138T HAM
Vibrio cholerae Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. 2 Yes 71-89, 6550, 6536 SMI V6-13 SMI
Vibrio cincinnatiensis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 7891T HAM
Vibrio comitans Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio communis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio coralliilyticus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 20984T HAM
Vibrio crassostreae Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio cyclitrophicus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 21359T HAM
Vibrio diabolicus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio diazotrophicus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 2604T HAM, CECT 627T EGS
Vibrio ezurae Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 17533T HAM
Vibrio fluvialis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 7894T HAM, CCM 3695 CCM, CCM 3689T CCM
Vibrio fortis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 19133T DSM
Vibrio furnissii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 7910T HAM, CECT 4203T EGS
Vibrio gallaecicus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio gallicus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio gazogenes Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 19540T HAM
Vibrio gigantis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 22741T HAM
Vibrio halioticoli Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio hangzhouensis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio harveyi Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 7890 HAM, LMG 4044T HAM, LMG 19643 HAM, DSM 19623T DSM
Vibrio hepatarius Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio hippocampi Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio hispanicus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 16580T HAM
Vibrio ichthyoenteri Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 14397T HAM, CECT 5675T EGS
Vibrio inusitatus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio kanaloae Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 17181T HAM
Vibrio lentus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 13757T HAM
Vibrio litoralis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio mangrovi Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio marisflavi Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio maritimus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio mediterranei Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 19502T HAM
Vibrio metschnikovii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 11664T HAM, V47 IBS
Vibrio mimicus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 7896T HAM
Vibrio mytili Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 19137T LGL
Vibrio natriegens Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 759T HAM
Vibrio navarrensis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 15976T HAM
Vibrio neonatus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio neptunius Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 17183T HAM
Vibrio nereis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 3895T HAM
Vibrio nigripulchritudo Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 3896T HAM
Vibrio ordalii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 13544T HAM
Vibrio orientalis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 7897T HAM
Vibrio ostreicida Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes EGS
Vibrio owensii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio pacinii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 19999T HAM
Vibrio parahaemolyticus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes CCM 5937 CCM, DSM 10027T DSM, DSM 11058 DSM, DSM 15416 DSM, DSM 15477 DSM, 7a IBS, 4a IBS
Vibrio pectenicida Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 19642T HAM, A365 EGS
Vibrio pelagius Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. 1 Yes DSM 21205T DSM
Vibrio penaeicida Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 14398T HAM
Vibrio plantisponsor Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio pomeroyi Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 17180T HAM
Vibrio ponticus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 16217T HAM
Vibrio porteresiae Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio proteolyticus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 30189T DSM
Vibrio rarus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio rhizosphaerae Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio rotiferianus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 17186T HAM
Vibrio ruber Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 16370T HAM
Vibrio rumoiensis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 19141T LGL
Vibrio sagamiensis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio scophthalmi Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes CECT 4638T EGS, LMG 19158T HAM
Vibrio shilonii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 13774T HAM
Vibrio sinaloensis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio splendidus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes LMG 19031T HAM
Vibrio stylophorae Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio superstes Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 16383T HAM
Vibrio tapetis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio tasmaniensis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 17182T HAM
Vibrio tubiashii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio variabilis Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. No
Vibrio vulnificus Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 10143T HAM, RV_1 LBK, CCM 2840 CCM, CCM 2839 CCM, CCM 2838 CCM
Vibrio xuii Gram-, curved rod shape, facultative anaerobes non-sporeforming oxidase positive. Yes DSM 17185T HAM
Virgibacillus alimentarius Gram+ facultative anaerobes No
Virgibacillus arcticus Gram+ facultative anaerobes No
Virgibacillus byunsanensis Gram+ facultative anaerobes No
Virgibacillus campisalis Gram+ facultative anaerobes No
Virgibacillus carmonensis Gram+ facultative anaerobes No
Virgibacillus chiguensis Gram+ facultative anaerobes No
Virgibacillus dokdonensis Gram+ facultative anaerobes No
Virgibacillus halodenitrificans Gram+ facultative anaerobes Yes DSM 10037T DSM
Virgibacillus halophilus Gram+ facultative anaerobes No
Virgibacillus kekensis Gram+ facultative anaerobes No
Virgibacillus koreensis Gram+ facultative anaerobes No
Virgibacillus marismortui Gram+ facultative anaerobes No
Virgibacillus necropolis Gram+ facultative anaerobes No
Virgibacillus olivae Gram+ facultative anaerobes No
Virgibacillus pantothenticus Gram+ facultative anaerobes Yes DSM 26T DSM
Virgibacillus proomii Gram+ facultative anaerobes Yes DSM 2242 DSM, DSM 2241 DSM, DSM 13055T DSM
Virgibacillus salarius Gram+ facultative anaerobes No
Virgibacillus salexigens Gram+ facultative anaerobes No
Virgibacillus salinus Gram+ facultative anaerobes No
Virgibacillus sediminis Gram+ facultative anaerobes No
Virgibacillus siamensis Gram+ facultative anaerobes No
Virgibacillus soli Gram+ facultative anaerobes No
Virgibacillus subterraneus Gram+ facultative anaerobes No
Virgibacillus xinjiangensis Gram+ facultative anaerobes No
Viridibacillus arenosi Gram+, motile rods, single or chainfoming, produce endospores. Yes DSM 16319T DSM
Viridibacillus arvi Gram+, motile rods, single or chainfoming, produce endospores. Yes DSM 16317T DSM
Viridibacillus neidei Gram+, motile rods, single or chainfoming, produce endospores. Yes DSM 15031T DSM
Wautersiella falsenii Gram- rods, non-fermenting Yes 02_08_TR IBS, 090915_04 LBK
Weeksella virosa Gram- rod oxidase and catalase negative. female genital samples Yes LMG 12995T HAM, VA10628_10 ERL
Weissella beninensis Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella ceti Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella cibaria Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella confusa Gram+ bacteria, spherical or lenticular cells to irregular rods Yes DSM 20196T DSM
Weissella fabaria Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella ghanensis Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella halotolerans Gram+ bacteria, spherical or lenticular cells to irregular rods Yes DSM 20190T DSM
Weissella hellenica Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella kandleri Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella koreensis Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella minor Gram+ bacteria, spherical or lenticular cells to irregular rods Yes DSM 20014T DSM
Weissella paramesenteroides Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella soli Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella thailandensis Gram+ bacteria, spherical or lenticular cells to irregular rods No
Weissella viridescens Gram+ bacteria, spherical or lenticular cells to irregular rods Yes DSM 20410T DSM, DSM 20248 DSM
Wohlfahrtiimonas chitiniclastica Bacteremia, sepsis Gamma proteobacterium, short rods, non motile, Gram-, strictly aerobic. Fly larvae of the parasitic fly Wohlfahrtia magnifica. 2 Yes DSM 18708T DSM, BL 906055 UKH
Wolinella succinogenes Gram-, anaerobic rod shaped bacteria. 2 Yes DSM 1740T HAM
Xanthobacter agilis No null
Xanthobacter aminoxidans No null
Xanthobacter autotrophicus Yes DSM 432T DSM
Xanthobacter flavus No null
Xanthobacter tagetidis No null
Xanthobacter viscosus No null
Xanthomonas albilineans Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 3583T DSM null
Xanthomonas alfalfae Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas alfalfae ssp alfalfae Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas alfalfae ssp citrumelonis Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas arboricola Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 18808T DSM, DSM 50854 DSM
Xanthomonas axonopodis pv axonopodis Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 3585T DSM
Xanthomonas axonopodis pv begoniae Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 50850 DSM
Xanthomonas bromi Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 18804T DSM
Xanthomonas campestris Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 1050 DSM, DSM 1526 DSM, DSM 19000 DSM, DSM 2405 DSM, DSM 2406 DSM, DSM 50852 DSM, DSM 3586T DSM, DSM 2407 DSM, DSM 50851 DSM
Xanthomonas campestris pvar campestris Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 3586T DSM
Xanthomonas cassavae Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 18958T DSM
Xanthomonas citri ssp citri Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas citri pv malvacearum Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 3849 DSM, DSM 1220 DSM
Xanthomonas codiaei Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 18812TA DSM, DSM 18812TB DSM
Xanthomonas cucurbitae Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 18957T DSM
Xanthomonas cynarae Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 16794T DSM, DSM 18811 DSM
Xanthomonas dyei Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas euvesicatoria Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas fragariae Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas fuscans ssp aurantifolii Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas fuscans ssp fuscans Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas gardneri Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas hortorum Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 50857 DSM, DSM 50858 DSM, DSM 50859 DSM
Xanthomonas hyacinthi Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 50855 DSM
Xanthomonas melonis Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 18798T DSM, DSM 18798bT DSM, DSM 18798aT DSM
Xanthomonas oryzae Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas perforans Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 18975T DSM
Xanthomonas phaseoli Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas pisi Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 18956T DSM
Xanthomonas popoli Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas sacchari Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xanthomonas theicola Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 18797T DSM
Xanthomonas translucens Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 18974T DSM
Xanthomonas vasicola Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples Yes DSM 3851T DSM, DSM 16926T DSM
Xanthomonas vesicatoria Plant pathogens Gram-, rod-shaped bacteria Soil, plant samples No null
Xenorhabdus beddingii Yes DSM 4764T HAM
Xenorhabdus bovienii Yes DSM 4766T HAM
Xenorhabdus budapestensis Yes DSM 16342T HAM
Xenorhabdus cabanillasii No null
Xenorhabdus doucetiae No null
Xenorhabdus ehlersii Yes DSM 16337T HAM
Xenorhabdus griffiniae No null
Xenorhabdus hominickii No null
Xenorhabdus indica No null
Xenorhabdus innexi Yes DSM 16336T HAM
Xenorhabdus japonica Yes DSM 16522T HAM
Xenorhabdus koppenhoeferi No null
Xenorhabdus kozodoii No null
Xenorhabdus mauleonii No null
Xenorhabdus miraniensis No null
Xenorhabdus nematophila Yes DSM 3370T HAM
Xenorhabdus poinarii Yes DSM 4768T HAM
Xenorhabdus romanii No null
Xenorhabdus stockiae No null
Xenorhabdus szentirmaii Yes DSM 16338T HAM
Xenorhabdus vietnamensis No null
Yersinia aldovae Gram-, rods, facultative anaerobes. 2 Yes DSM 18303T RKB Bruker MSP is generated only with 3 spectra and species identification is not 100% correct.
Yersinia aleksiciae Gram-, rods, facultative anaerobes. 2 Yes DSM 14987T RKB Bruker MSP is generated only with 3 spectra and species identification is not 100% correct.
Yersinia bercovieri Gram-, rods, facultative anaerobes. 2 Yes DSM 18528T RKB SMI_5-12_SMI, SMI_14-12_SMI, SMI_16-12_SMI, SMI_23-12_SMI, SMI_24-09_SMI, CCUG_37900_SMI, SMI Y07-13 SMI, SMI Y16-13 SMI, SMI Y33-13 SMI, SMI Y36-13 SMI, SMI Y44-13 SMI, SMI Y45-13 SMI Bruker MSP is generated only with 3 spectra and species identification is not 100% correct.
Yersinia enterocolitica Yersiniosis, reactive arthritis, pseudoappendicitis. Gram-, rods, facultative anaerobes. 2 Yes (serovar O41_43) 31075 RKB, (serovar O9) H 705 86 RKB, (serovar O30) 3 RKB, (serovar O3) 29918 RKB, (serovar O15) 31089 RKB, (serovar O13_7) 6 RKB, (serovar O10) 32 RKB CCUG_4588_SMI, CCUG_8231_SMI, CCUG_8232_SMI, CCUG_8233_SMI, CCUG_8235_SMI, CCUG_8236_SMI, CCUG_8237_SMI, CCUG_8238_SMI, CCUG_8240_SMI, CCUG_8243_SMI, CCUG_8244_SMI, CCUG_8245_SMI, CCUG_8248_SMI, CCUG_8249_SMI, CCUG_8250_SMI, CCUG_8251_SMI, CCUG_8252_SMI, CCUG_12369_SMI, CCUG_29125_SMI, CCUG_31436_SMI, CCUG_37895_SMI, CCUG 33553 SMI Bruker MSPs ending with RKB are generated only with 3 spectra and species identification is not 100% correct.
Yersinia enterocolitica ssp enterocolitica Yersiniosis, reactive arthritis, pseudoappendicitis. Gram-, rods, facultative anaerobes. 2 Yes (serovar O8) ATCC 9610T RKB, (serovar O8) ATCC 9610T THL, (serovar O8) DSM 4780T RKB
Yersinia enterocolitica ssp palearctica Yersiniosis, reactive arthritis, pseudoappendicitis. Gram-, rods, facultative anaerobes. 2 Yes (serovar O3_4) DSM 13030T HAM
Yersinia entomophaga Gram-, rods, facultative anaerobes. 2 No
Yersinia frederiksenii Gram-, rods, facultative anaerobes. 2 Yes DSM 18490T HAM SMI Y34-13 SMI, SMI Y71-12 SMI, SMI Y3-12 SMI, SMI Y1-11 SMI
Yersinia intermedia Gram-, rods, facultative anaerobes. 2 Yes DSM 18517T RKB ATCC 29909 SMI Bruker MSP is generated only with 3 spectra and species identification is not 100% correct.
Yersinia kristensenii Gram-, rods, facultative anaerobes. 2 Yes DSM 18543T RKB SMI Y35-13 SMI Bruker MSP is generated only with 3 spectra and species identification is not 100% correct.
Yersinia massiliensis Gram-, rods, facultative anaerobes. Water samples 2 No SMI_2-08_SMI, SMI_32-11_SMI, SMI_37-07_SMI
Yersinia mollaretii Gram-, rods, facultative anaerobes. 2 Yes DSM_18520T_RKB SMI_25-12_SMI, SMI_30-12_SMI, SMI_6-10_SMI, SMI_65-09_SMI, CCUG_37901_SMI Bruker MSP is generated only with 3 spectra and species identification is not 100% correct.
Yersinia nurmii Gram-, rods, facultative anaerobes. 2 No
Yersinia pekkanenii Gram-, rods, facultative anaerobes. 2 No Yersinia pekkanenii CCUG 60991 SMI
Yersinia pseudotuberculosis Yersiniosis Gram-, rods, facultative anaerobes. 2 Yes Typ3 p- inv+ RKB, 29490 RKB, 29827 RKB, A188_1_04_2 FLR, DSM 8992T HAM, I RKB SMI_10-10_SMI, SMI_18-09_SMI, SMI_24-12_SMI, SMI_26-10_SMI, SMI_33-08_SMI, SMI_33-12_SMI, SMI_42-08_SMI, SMI_46-09_SMI, SMI_78-08_SMI Bruker MSPs ending with RKB are generated only with 3 spectra and species identification is not 100% correct.
Yersinia rohdei Gram-, rods, facultative anaerobes. 2 Yes DSM 18270T RKB SMI_4-09_SMI, SMI_10-12_SMI, SMI_4-11_SMI, SMI_6-09_SMI, SMI Y81-12 SMI Bruker MSP is generated only with 3 spectra and species identification is not 100% correct.
Yersinia ruckeri Gram-, rods, facultative anaerobes. 2 Yes DSM 18506T RKB Bruker MSP is generated only with 3 spectra and species identification is not 100% correct.
Yersinia similis Gram-, rods, facultative anaerobes. 2 No CCUG_52882_SMI
Yokenella regensburgei 2 Yes CIP 105435T HAM
Zygosaccharomyces bailii Fungus Yes DSM 70834 DSM, DSM 70492 DSM
Zygosaccharomyces bisporus Fungus 1 Yes DSM 70415T DSM
Zygosaccharomyces florentinus Fungus 2 Yes DSM 70506T DSM
Zygosaccharomyces microellipsoides Fungus 2 Yes DSM 6959T DSM
Zygosaccharomyces rouxii Fungus 1 Yes DSM 70540 DSM, DSM 70535 DSM